co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0032350: regulation of hormone metabolic process	0.00E+00
3	GO:0048856: anatomical structure development	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
6	GO:0016576: histone dephosphorylation	0.00E+00
7	GO:0015739: sialic acid transport	0.00E+00
8	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
9	GO:0010343: singlet oxygen-mediated programmed cell death	2.70E-07
10	GO:0006526: arginine biosynthetic process	4.07E-05
11	GO:1902265: abscisic acid homeostasis	6.91E-05
12	GO:0033206: meiotic cytokinesis	6.91E-05
13	GO:0072387: flavin adenine dinucleotide metabolic process	6.91E-05
14	GO:0044419: interspecies interaction between organisms	1.66E-04
15	GO:0010617: circadian regulation of calcium ion oscillation	1.66E-04
16	GO:0099402: plant organ development	1.66E-04
17	GO:0034398: telomere tethering at nuclear periphery	1.66E-04
18	GO:0035335: peptidyl-tyrosine dephosphorylation	1.66E-04
19	GO:0043039: tRNA aminoacylation	1.66E-04
20	GO:1901529: positive regulation of anion channel activity	1.66E-04
21	GO:2000377: regulation of reactive oxygen species metabolic process	1.94E-04
22	GO:0006591: ornithine metabolic process	2.81E-04
23	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	2.81E-04
24	GO:1901672: positive regulation of systemic acquired resistance	2.81E-04
25	GO:0045739: positive regulation of DNA repair	2.81E-04
26	GO:0031022: nuclear migration along microfilament	2.81E-04
27	GO:1902448: positive regulation of shade avoidance	2.81E-04
28	GO:1901332: negative regulation of lateral root development	4.06E-04
29	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	4.06E-04
30	GO:0006882: cellular zinc ion homeostasis	4.06E-04
31	GO:0051567: histone H3-K9 methylation	5.42E-04
32	GO:1902347: response to strigolactone	5.42E-04
33	GO:0009902: chloroplast relocation	5.42E-04
34	GO:0009956: radial pattern formation	5.42E-04
35	GO:0006808: regulation of nitrogen utilization	5.42E-04
36	GO:0031935: regulation of chromatin silencing	5.42E-04
37	GO:0016120: carotene biosynthetic process	6.87E-04
38	GO:0000304: response to singlet oxygen	6.87E-04
39	GO:0010117: photoprotection	6.87E-04
40	GO:0046283: anthocyanin-containing compound metabolic process	6.87E-04
41	GO:0010029: regulation of seed germination	7.30E-04
42	GO:0045962: positive regulation of development, heterochronic	8.40E-04
43	GO:1901371: regulation of leaf morphogenesis	8.40E-04
44	GO:0060918: auxin transport	8.40E-04
45	GO:0016458: gene silencing	8.40E-04
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.40E-04
47	GO:0010218: response to far red light	9.79E-04
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.99E-04
49	GO:2000033: regulation of seed dormancy process	9.99E-04
50	GO:0009099: valine biosynthetic process	9.99E-04
51	GO:0009903: chloroplast avoidance movement	9.99E-04
52	GO:0010555: response to mannitol	9.99E-04
53	GO:0010310: regulation of hydrogen peroxide metabolic process	9.99E-04
54	GO:2000067: regulation of root morphogenesis	9.99E-04
55	GO:0009637: response to blue light	1.12E-03
56	GO:0080111: DNA demethylation	1.17E-03
57	GO:0030026: cellular manganese ion homeostasis	1.17E-03
58	GO:0051510: regulation of unidimensional cell growth	1.17E-03
59	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.34E-03
60	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.34E-03
61	GO:0009704: de-etiolation	1.34E-03
62	GO:0010928: regulation of auxin mediated signaling pathway	1.34E-03
63	GO:0007186: G-protein coupled receptor signaling pathway	1.53E-03
64	GO:0010233: phloem transport	1.53E-03
65	GO:0009097: isoleucine biosynthetic process	1.53E-03
66	GO:0010100: negative regulation of photomorphogenesis	1.53E-03
67	GO:0009965: leaf morphogenesis	1.59E-03
68	GO:0046916: cellular transition metal ion homeostasis	1.73E-03
69	GO:0015780: nucleotide-sugar transport	1.73E-03
70	GO:0098656: anion transmembrane transport	1.73E-03
71	GO:0008356: asymmetric cell division	1.93E-03
72	GO:1900426: positive regulation of defense response to bacterium	1.93E-03
73	GO:0009638: phototropism	1.93E-03
74	GO:0009098: leucine biosynthetic process	1.93E-03
75	GO:0055062: phosphate ion homeostasis	2.14E-03
76	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.14E-03
77	GO:0045036: protein targeting to chloroplast	2.14E-03
78	GO:0009750: response to fructose	2.36E-03
79	GO:0006816: calcium ion transport	2.36E-03
80	GO:0009785: blue light signaling pathway	2.82E-03
81	GO:0030048: actin filament-based movement	2.82E-03
82	GO:0050826: response to freezing	2.82E-03
83	GO:0010075: regulation of meristem growth	2.82E-03
84	GO:0009863: salicylic acid mediated signaling pathway	3.81E-03
85	GO:0010187: negative regulation of seed germination	3.81E-03
86	GO:0006406: mRNA export from nucleus	3.81E-03
87	GO:0006289: nucleotide-excision repair	3.81E-03
88	GO:0006418: tRNA aminoacylation for protein translation	4.08E-03
89	GO:0009416: response to light stimulus	4.28E-03
90	GO:0006306: DNA methylation	4.35E-03
91	GO:0006470: protein dephosphorylation	5.28E-03
92	GO:0051028: mRNA transport	5.50E-03
93	GO:0016117: carotenoid biosynthetic process	5.50E-03
94	GO:0080022: primary root development	5.80E-03
95	GO:0010051: xylem and phloem pattern formation	5.80E-03
96	GO:0010087: phloem or xylem histogenesis	5.80E-03
97	GO:0010118: stomatal movement	5.80E-03
98	GO:0006606: protein import into nucleus	5.80E-03
99	GO:0009958: positive gravitropism	6.11E-03
100	GO:0006520: cellular amino acid metabolic process	6.11E-03
101	GO:0042752: regulation of circadian rhythm	6.42E-03
102	GO:0009646: response to absence of light	6.42E-03
103	GO:0009749: response to glucose	6.74E-03
104	GO:0055072: iron ion homeostasis	6.74E-03
105	GO:0032502: developmental process	7.40E-03
106	GO:0007264: small GTPase mediated signal transduction	7.40E-03
107	GO:1901657: glycosyl compound metabolic process	7.73E-03
108	GO:0006464: cellular protein modification process	8.08E-03
109	GO:0048366: leaf development	8.40E-03
110	GO:0018298: protein-chromophore linkage	1.10E-02
111	GO:0009733: response to auxin	1.21E-02
112	GO:0009631: cold acclimation	1.22E-02
113	GO:0009910: negative regulation of flower development	1.22E-02
114	GO:0032259: methylation	1.25E-02
115	GO:0009867: jasmonic acid mediated signaling pathway	1.30E-02
116	GO:0034599: cellular response to oxidative stress	1.34E-02
117	GO:0030001: metal ion transport	1.43E-02
118	GO:0006897: endocytosis	1.47E-02
119	GO:0009640: photomorphogenesis	1.56E-02
120	GO:0010114: response to red light	1.56E-02
121	GO:0009744: response to sucrose	1.56E-02
122	GO:0008643: carbohydrate transport	1.65E-02
123	GO:0009644: response to high light intensity	1.65E-02
124	GO:0006260: DNA replication	1.78E-02
125	GO:0042538: hyperosmotic salinity response	1.83E-02
126	GO:0009585: red, far-red light phototransduction	1.92E-02
127	GO:0051603: proteolysis involved in cellular protein catabolic process	1.97E-02
128	GO:0006417: regulation of translation	2.07E-02
129	GO:0009740: gibberellic acid mediated signaling pathway	2.37E-02
130	GO:0009737: response to abscisic acid	2.72E-02
131	GO:0007623: circadian rhythm	3.65E-02
132	GO:0009451: RNA modification	3.71E-02
133	GO:0009739: response to gibberellin	3.95E-02
134	GO:0010468: regulation of gene expression	4.14E-02
135	GO:0009658: chloroplast organization	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
3	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
4	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
5	GO:0008170: N-methyltransferase activity	0.00E+00
6	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
7	GO:0009008: DNA-methyltransferase activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
10	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
11	GO:0004831: tyrosine-tRNA ligase activity	6.91E-05
12	GO:0046480: galactolipid galactosyltransferase activity	6.91E-05
13	GO:0080079: cellobiose glucosidase activity	6.91E-05
14	GO:0015085: calcium ion transmembrane transporter activity	6.91E-05
15	GO:0016743: carboxyl- or carbamoyltransferase activity	1.66E-04
16	GO:0019003: GDP binding	2.81E-04
17	GO:0031683: G-protein beta/gamma-subunit complex binding	2.81E-04
18	GO:0001664: G-protein coupled receptor binding	2.81E-04
19	GO:0052656: L-isoleucine transaminase activity	4.06E-04
20	GO:0009882: blue light photoreceptor activity	4.06E-04
21	GO:0052654: L-leucine transaminase activity	4.06E-04
22	GO:0052655: L-valine transaminase activity	4.06E-04
23	GO:0004518: nuclease activity	5.17E-04
24	GO:0004084: branched-chain-amino-acid transaminase activity	5.42E-04
25	GO:0015368: calcium:cation antiporter activity	5.42E-04
26	GO:0015369: calcium:proton antiporter activity	5.42E-04
27	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	9.99E-04
28	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	9.99E-04
29	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.17E-03
30	GO:0017056: structural constituent of nuclear pore	1.34E-03
31	GO:0015288: porin activity	1.34E-03
32	GO:0046914: transition metal ion binding	1.53E-03
33	GO:0071949: FAD binding	1.73E-03
34	GO:0000989: transcription factor activity, transcription factor binding	1.73E-03
35	GO:0005487: nucleocytoplasmic transporter activity	1.93E-03
36	GO:0004129: cytochrome-c oxidase activity	2.36E-03
37	GO:0008378: galactosyltransferase activity	2.58E-03
38	GO:0005315: inorganic phosphate transmembrane transporter activity	2.82E-03
39	GO:0008139: nuclear localization sequence binding	2.82E-03
40	GO:0004386: helicase activity	2.93E-03
41	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.45E-03
42	GO:0003887: DNA-directed DNA polymerase activity	3.56E-03
43	GO:0004672: protein kinase activity	3.93E-03
44	GO:0004176: ATP-dependent peptidase activity	4.35E-03
45	GO:0005351: sugar:proton symporter activity	4.52E-03
46	GO:0008514: organic anion transmembrane transporter activity	5.20E-03
47	GO:0004812: aminoacyl-tRNA ligase activity	5.50E-03
48	GO:0042802: identical protein binding	5.86E-03
49	GO:0008080: N-acetyltransferase activity	6.11E-03
50	GO:0008168: methyltransferase activity	6.87E-03
51	GO:0008237: metallopeptidase activity	8.42E-03
52	GO:0016597: amino acid binding	8.77E-03
53	GO:0008375: acetylglucosaminyltransferase activity	9.87E-03
54	GO:0004871: signal transducer activity	1.11E-02
55	GO:0005096: GTPase activator activity	1.14E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.18E-02
57	GO:0004222: metalloendopeptidase activity	1.18E-02
58	GO:0003924: GTPase activity	1.31E-02
59	GO:0008422: beta-glucosidase activity	1.38E-02
60	GO:0016757: transferase activity, transferring glycosyl groups	1.40E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	1.43E-02
62	GO:0004185: serine-type carboxypeptidase activity	1.56E-02
63	GO:0003723: RNA binding	1.59E-02
64	GO:0035091: phosphatidylinositol binding	1.65E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.07E-02
66	GO:0030170: pyridoxal phosphate binding	3.12E-02
67	GO:0015144: carbohydrate transmembrane transporter activity	3.30E-02
68	GO:0005525: GTP binding	3.82E-02
69	GO:0046872: metal ion binding	4.00E-02
70	GO:0005515: protein binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0055037: recycling endosome	0.00E+00
2	GO:0030427: site of polarized growth	0.00E+00
3	GO:0009507: chloroplast	1.42E-04
4	GO:0044614: nuclear pore cytoplasmic filaments	2.81E-04
5	GO:0016605: PML body	2.81E-04
6	GO:0030140: trans-Golgi network transport vesicle	8.40E-04
7	GO:0009840: chloroplastic endopeptidase Clp complex	9.99E-04
8	GO:0031359: integral component of chloroplast outer membrane	1.17E-03
9	GO:0000123: histone acetyltransferase complex	1.17E-03
10	GO:0016604: nuclear body	1.93E-03
11	GO:0005623: cell	3.45E-03
12	GO:0005769: early endosome	3.56E-03
13	GO:0042651: thylakoid membrane	4.08E-03
14	GO:0015935: small ribosomal subunit	4.35E-03
15	GO:0005770: late endosome	6.11E-03
16	GO:0031965: nuclear membrane	6.74E-03
17	GO:0009707: chloroplast outer membrane	1.10E-02
18	GO:0009536: plastid	1.36E-02
19	GO:0005819: spindle	1.38E-02
20	GO:0005635: nuclear envelope	2.02E-02
21	GO:0005834: heterotrimeric G-protein complex	2.27E-02
22	GO:0005654: nucleoplasm	2.84E-02
23	GO:0009705: plant-type vacuole membrane	3.65E-02
24	GO:0009570: chloroplast stroma	3.69E-02
25	GO:0005802: trans-Golgi network	3.72E-02
26	GO:0005622: intracellular	4.12E-02
27	GO:0005768: endosome	4.23E-02