co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0005996: monosaccharide metabolic process	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015979: photosynthesis	3.72E-20
9	GO:0006412: translation	3.86E-18
10	GO:0032544: plastid translation	1.69E-17
11	GO:0009735: response to cytokinin	1.23E-14
12	GO:0042254: ribosome biogenesis	4.77E-11
13	GO:0009409: response to cold	5.28E-09
14	GO:0019464: glycine decarboxylation via glycine cleavage system	2.33E-07
15	GO:0009773: photosynthetic electron transport in photosystem I	3.48E-07
16	GO:0042742: defense response to bacterium	7.89E-07
17	GO:0010027: thylakoid membrane organization	1.21E-06
18	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.65E-06
19	GO:0010196: nonphotochemical quenching	2.93E-06
20	GO:0009658: chloroplast organization	4.35E-06
21	GO:0010206: photosystem II repair	9.06E-06
22	GO:0006000: fructose metabolic process	9.64E-06
23	GO:0010207: photosystem II assembly	3.98E-05
24	GO:0045727: positive regulation of translation	3.99E-05
25	GO:0006546: glycine catabolic process	3.99E-05
26	GO:0015995: chlorophyll biosynthetic process	4.21E-05
27	GO:0009817: defense response to fungus, incompatible interaction	5.14E-05
28	GO:0009768: photosynthesis, light harvesting in photosystem I	7.83E-05
29	GO:0045454: cell redox homeostasis	1.23E-04
30	GO:0009645: response to low light intensity stimulus	1.69E-04
31	GO:0005978: glycogen biosynthetic process	2.16E-04
32	GO:0019252: starch biosynthetic process	2.29E-04
33	GO:0043489: RNA stabilization	2.39E-04
34	GO:0080093: regulation of photorespiration	2.39E-04
35	GO:0031998: regulation of fatty acid beta-oxidation	2.39E-04
36	GO:1902458: positive regulation of stomatal opening	2.39E-04
37	GO:0006002: fructose 6-phosphate metabolic process	2.67E-04
38	GO:0043085: positive regulation of catalytic activity	5.19E-04
39	GO:0018119: peptidyl-cysteine S-nitrosylation	5.19E-04
40	GO:0035304: regulation of protein dephosphorylation	5.29E-04
41	GO:0019388: galactose catabolic process	5.29E-04
42	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.29E-04
43	GO:0010270: photosystem II oxygen evolving complex assembly	5.29E-04
44	GO:0018298: protein-chromophore linkage	5.78E-04
45	GO:0005986: sucrose biosynthetic process	6.71E-04
46	GO:0006094: gluconeogenesis	6.71E-04
47	GO:0009767: photosynthetic electron transport chain	6.71E-04
48	GO:0034599: cellular response to oxidative stress	8.23E-04
49	GO:0048281: inflorescence morphogenesis	8.60E-04
50	GO:0006518: peptide metabolic process	8.60E-04
51	GO:0016050: vesicle organization	8.60E-04
52	GO:0051085: chaperone mediated protein folding requiring cofactor	1.23E-03
53	GO:0006241: CTP biosynthetic process	1.23E-03
54	GO:0006165: nucleoside diphosphate phosphorylation	1.23E-03
55	GO:0006228: UTP biosynthetic process	1.23E-03
56	GO:0010148: transpiration	1.23E-03
57	GO:0010731: protein glutathionylation	1.23E-03
58	GO:0009590: detection of gravity	1.23E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.23E-03
60	GO:0071484: cellular response to light intensity	1.23E-03
61	GO:0061077: chaperone-mediated protein folding	1.25E-03
62	GO:0009765: photosynthesis, light harvesting	1.64E-03
63	GO:0006109: regulation of carbohydrate metabolic process	1.64E-03
64	GO:0006183: GTP biosynthetic process	1.64E-03
65	GO:2000122: negative regulation of stomatal complex development	1.64E-03
66	GO:0010021: amylopectin biosynthetic process	1.64E-03
67	GO:0010037: response to carbon dioxide	1.64E-03
68	GO:0006808: regulation of nitrogen utilization	1.64E-03
69	GO:0015976: carbon utilization	1.64E-03
70	GO:0006662: glycerol ether metabolic process	2.03E-03
71	GO:0000304: response to singlet oxygen	2.09E-03
72	GO:0006544: glycine metabolic process	2.09E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.09E-03
74	GO:0006097: glyoxylate cycle	2.09E-03
75	GO:0006461: protein complex assembly	2.09E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.57E-03
77	GO:0000470: maturation of LSU-rRNA	2.57E-03
78	GO:0006828: manganese ion transport	2.57E-03
79	GO:0006563: L-serine metabolic process	2.57E-03
80	GO:0042549: photosystem II stabilization	2.57E-03
81	GO:0009955: adaxial/abaxial pattern specification	3.09E-03
82	GO:0042026: protein refolding	3.09E-03
83	GO:1901259: chloroplast rRNA processing	3.09E-03
84	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.09E-03
85	GO:0070370: cellular heat acclimation	3.64E-03
86	GO:0010103: stomatal complex morphogenesis	3.64E-03
87	GO:2000070: regulation of response to water deprivation	4.23E-03
88	GO:0015996: chlorophyll catabolic process	4.84E-03
89	GO:0007186: G-protein coupled receptor signaling pathway	4.84E-03
90	GO:0001558: regulation of cell growth	4.84E-03
91	GO:0009657: plastid organization	4.84E-03
92	GO:0007623: circadian rhythm	4.85E-03
93	GO:0010218: response to far red light	5.18E-03
94	GO:0006783: heme biosynthetic process	5.48E-03
95	GO:0006810: transport	5.71E-03
96	GO:0009637: response to blue light	5.96E-03
97	GO:0055114: oxidation-reduction process	6.07E-03
98	GO:0010205: photoinhibition	6.15E-03
99	GO:0035999: tetrahydrofolate interconversion	6.15E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	6.85E-03
101	GO:0006816: calcium ion transport	7.58E-03
102	GO:0019684: photosynthesis, light reaction	7.58E-03
103	GO:0006415: translational termination	7.58E-03
104	GO:0000272: polysaccharide catabolic process	7.58E-03
105	GO:0009750: response to fructose	7.58E-03
106	GO:0010114: response to red light	7.68E-03
107	GO:0009644: response to high light intensity	8.31E-03
108	GO:0005983: starch catabolic process	8.33E-03
109	GO:0045037: protein import into chloroplast stroma	8.33E-03
110	GO:0006108: malate metabolic process	9.11E-03
111	GO:0006006: glucose metabolic process	9.11E-03
112	GO:0010020: chloroplast fission	9.92E-03
113	GO:0019253: reductive pentose-phosphate cycle	9.92E-03
114	GO:0006364: rRNA processing	1.04E-02
115	GO:0005985: sucrose metabolic process	1.07E-02
116	GO:0000027: ribosomal large subunit assembly	1.25E-02
117	GO:0009944: polarity specification of adaxial/abaxial axis	1.25E-02
118	GO:0006289: nucleotide-excision repair	1.25E-02
119	GO:0051302: regulation of cell division	1.34E-02
120	GO:0006418: tRNA aminoacylation for protein translation	1.34E-02
121	GO:0031408: oxylipin biosynthetic process	1.43E-02
122	GO:0016114: terpenoid biosynthetic process	1.43E-02
123	GO:0035428: hexose transmembrane transport	1.53E-02
124	GO:0007005: mitochondrion organization	1.53E-02
125	GO:0009411: response to UV	1.62E-02
126	GO:0001944: vasculature development	1.62E-02
127	GO:0042631: cellular response to water deprivation	1.93E-02
128	GO:0046686: response to cadmium ion	1.95E-02
129	GO:0010182: sugar mediated signaling pathway	2.03E-02
130	GO:0046323: glucose import	2.03E-02
131	GO:0008152: metabolic process	2.06E-02
132	GO:0015986: ATP synthesis coupled proton transport	2.14E-02
133	GO:0009790: embryo development	2.17E-02
134	GO:0000302: response to reactive oxygen species	2.36E-02
135	GO:0030163: protein catabolic process	2.59E-02
136	GO:0009627: systemic acquired resistance	3.32E-02
137	GO:0016311: dephosphorylation	3.58E-02
138	GO:0048481: plant ovule development	3.71E-02
139	GO:0008219: cell death	3.71E-02
140	GO:0009813: flavonoid biosynthetic process	3.84E-02
141	GO:0009631: cold acclimation	4.11E-02
142	GO:0010119: regulation of stomatal movement	4.11E-02
143	GO:0009853: photorespiration	4.39E-02
144	GO:0045087: innate immune response	4.39E-02
145	GO:0006099: tricarboxylic acid cycle	4.53E-02
146	GO:0080167: response to karrikin	4.89E-02
147	GO:0006631: fatty acid metabolic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0051738: xanthophyll binding	0.00E+00
8	GO:0019843: rRNA binding	2.78E-28
9	GO:0003735: structural constituent of ribosome	5.71E-21
10	GO:0008266: poly(U) RNA binding	1.26E-10
11	GO:0051920: peroxiredoxin activity	1.81E-06
12	GO:0005528: FK506 binding	1.92E-06
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.65E-06
14	GO:0016209: antioxidant activity	4.46E-06
15	GO:0004324: ferredoxin-NADP+ reductase activity	9.64E-06
16	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.19E-05
17	GO:0016168: chlorophyll binding	3.40E-05
18	GO:0031409: pigment binding	5.69E-05
19	GO:0003959: NADPH dehydrogenase activity	6.36E-05
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.68E-04
21	GO:0050662: coenzyme binding	2.07E-04
22	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.39E-04
23	GO:0010242: oxygen evolving activity	2.39E-04
24	GO:0004856: xylulokinase activity	2.39E-04
25	GO:0009496: plastoquinol--plastocyanin reductase activity	2.39E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	2.39E-04
27	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.39E-04
28	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.39E-04
29	GO:0008047: enzyme activator activity	4.48E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	5.29E-04
31	GO:0008967: phosphoglycolate phosphatase activity	5.29E-04
32	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.29E-04
33	GO:0004614: phosphoglucomutase activity	5.29E-04
34	GO:0010297: heteropolysaccharide binding	5.29E-04
35	GO:0004373: glycogen (starch) synthase activity	8.60E-04
36	GO:0017150: tRNA dihydrouridine synthase activity	8.60E-04
37	GO:0002161: aminoacyl-tRNA editing activity	8.60E-04
38	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	8.60E-04
39	GO:0005504: fatty acid binding	8.60E-04
40	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.60E-04
41	GO:0030267: glyoxylate reductase (NADP) activity	8.60E-04
42	GO:0016851: magnesium chelatase activity	1.23E-03
43	GO:0016149: translation release factor activity, codon specific	1.23E-03
44	GO:0004550: nucleoside diphosphate kinase activity	1.23E-03
45	GO:0043023: ribosomal large subunit binding	1.23E-03
46	GO:0016491: oxidoreductase activity	1.40E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.64E-03
48	GO:0019199: transmembrane receptor protein kinase activity	1.64E-03
49	GO:0045430: chalcone isomerase activity	1.64E-03
50	GO:0009011: starch synthase activity	1.64E-03
51	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.64E-03
52	GO:0042277: peptide binding	1.64E-03
53	GO:0004601: peroxidase activity	1.70E-03
54	GO:0047134: protein-disulfide reductase activity	1.75E-03
55	GO:0004372: glycine hydroxymethyltransferase activity	2.09E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.09E-03
57	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-03
58	GO:0005509: calcium ion binding	2.28E-03
59	GO:0051082: unfolded protein binding	2.42E-03
60	GO:0048038: quinone binding	2.50E-03
61	GO:0004130: cytochrome-c peroxidase activity	2.57E-03
62	GO:0016615: malate dehydrogenase activity	2.57E-03
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.85E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.09E-03
65	GO:0030060: L-malate dehydrogenase activity	3.09E-03
66	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.09E-03
67	GO:0004252: serine-type endopeptidase activity	3.68E-03
68	GO:0008236: serine-type peptidase activity	4.47E-03
69	GO:0015078: hydrogen ion transmembrane transporter activity	4.84E-03
70	GO:0004222: metalloendopeptidase activity	5.18E-03
71	GO:0003747: translation release factor activity	5.48E-03
72	GO:0005515: protein binding	6.02E-03
73	GO:0005384: manganese ion transmembrane transporter activity	6.15E-03
74	GO:0044183: protein binding involved in protein folding	7.58E-03
75	GO:0000049: tRNA binding	8.33E-03
76	GO:0004565: beta-galactosidase activity	9.11E-03
77	GO:0004089: carbonate dehydratase activity	9.11E-03
78	GO:0015095: magnesium ion transmembrane transporter activity	9.11E-03
79	GO:0031072: heat shock protein binding	9.11E-03
80	GO:0004857: enzyme inhibitor activity	1.25E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.52E-02
82	GO:0022891: substrate-specific transmembrane transporter activity	1.62E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.82E-02
84	GO:0005355: glucose transmembrane transporter activity	2.14E-02
85	GO:0003723: RNA binding	2.70E-02
86	GO:0008237: metallopeptidase activity	2.83E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0009507: chloroplast	6.20E-106
6	GO:0009570: chloroplast stroma	5.86E-76
7	GO:0009941: chloroplast envelope	1.30E-72
8	GO:0009534: chloroplast thylakoid	4.12E-61
9	GO:0009535: chloroplast thylakoid membrane	1.34E-52
10	GO:0009579: thylakoid	2.30E-50
11	GO:0009543: chloroplast thylakoid lumen	1.26E-24
12	GO:0005840: ribosome	1.11E-21
13	GO:0031977: thylakoid lumen	7.43E-21
14	GO:0010319: stromule	1.57E-15
15	GO:0010287: plastoglobule	4.58E-13
16	GO:0030095: chloroplast photosystem II	1.26E-10
17	GO:0009654: photosystem II oxygen evolving complex	5.95E-10
18	GO:0048046: apoplast	8.29E-10
19	GO:0019898: extrinsic component of membrane	7.63E-09
20	GO:0009508: plastid chromosome	6.64E-07
21	GO:0016020: membrane	7.65E-07
22	GO:0009295: nucleoid	8.80E-07
23	GO:0009533: chloroplast stromal thylakoid	2.93E-06
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.06E-06
25	GO:0005960: glycine cleavage complex	2.19E-05
26	GO:0009706: chloroplast inner membrane	4.25E-05
27	GO:0030076: light-harvesting complex	4.79E-05
28	GO:0009522: photosystem I	2.07E-04
29	GO:0009538: photosystem I reaction center	2.16E-04
30	GO:0009523: photosystem II	2.29E-04
31	GO:0009782: photosystem I antenna complex	2.39E-04
32	GO:0031969: chloroplast membrane	4.87E-04
33	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.29E-04
34	GO:0030093: chloroplast photosystem I	5.29E-04
35	GO:0000311: plastid large ribosomal subunit	5.92E-04
36	GO:0015934: large ribosomal subunit	6.94E-04
37	GO:0000312: plastid small ribosomal subunit	7.56E-04
38	GO:0009528: plastid inner membrane	8.60E-04
39	GO:0010007: magnesium chelatase complex	8.60E-04
40	GO:0042651: thylakoid membrane	1.14E-03
41	GO:0009536: plastid	1.20E-03
42	GO:0015935: small ribosomal subunit	1.25E-03
43	GO:0009532: plastid stroma	1.25E-03
44	GO:0009517: PSII associated light-harvesting complex II	1.64E-03
45	GO:0009527: plastid outer membrane	1.64E-03
46	GO:0055035: plastid thylakoid membrane	2.09E-03
47	GO:0009512: cytochrome b6f complex	2.09E-03
48	GO:0022625: cytosolic large ribosomal subunit	2.56E-03
49	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.57E-03
50	GO:0009840: chloroplastic endopeptidase Clp complex	3.09E-03
51	GO:0016272: prefoldin complex	3.09E-03
52	GO:0009501: amyloplast	4.23E-03
53	GO:0042644: chloroplast nucleoid	5.48E-03
54	GO:0005763: mitochondrial small ribosomal subunit	5.48E-03
55	GO:0022626: cytosolic ribosome	9.57E-03
56	GO:0043234: protein complex	1.16E-02
57	GO:0030529: intracellular ribonucleoprotein complex	3.07E-02
58	GO:0022627: cytosolic small ribosomal subunit	3.39E-02
59	GO:0009707: chloroplast outer membrane	3.71E-02