co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0015979: photosynthesis	2.64E-10
9	GO:0010027: thylakoid membrane organization	1.17E-06
10	GO:0018026: peptidyl-lysine monomethylation	2.61E-06
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.15E-05
12	GO:0010207: photosystem II assembly	3.89E-05
13	GO:0048564: photosystem I assembly	2.12E-04
14	GO:1904966: positive regulation of vitamin E biosynthetic process	2.36E-04
15	GO:0000481: maturation of 5S rRNA	2.36E-04
16	GO:1904964: positive regulation of phytol biosynthetic process	2.36E-04
17	GO:0042371: vitamin K biosynthetic process	2.36E-04
18	GO:0065002: intracellular protein transmembrane transport	2.36E-04
19	GO:0043686: co-translational protein modification	2.36E-04
20	GO:0043007: maintenance of rDNA	2.36E-04
21	GO:1902458: positive regulation of stomatal opening	2.36E-04
22	GO:0034337: RNA folding	2.36E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.36E-04
24	GO:0006419: alanyl-tRNA aminoacylation	2.36E-04
25	GO:0043953: protein transport by the Tat complex	2.36E-04
26	GO:0000476: maturation of 4.5S rRNA	2.36E-04
27	GO:0000967: rRNA 5'-end processing	2.36E-04
28	GO:0015995: chlorophyll biosynthetic process	4.98E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.24E-04
30	GO:0080181: lateral root branching	5.24E-04
31	GO:0034470: ncRNA processing	5.24E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.24E-04
33	GO:0018298: protein-chromophore linkage	5.68E-04
34	GO:0006954: inflammatory response	8.52E-04
35	GO:0005977: glycogen metabolic process	8.52E-04
36	GO:0006281: DNA repair	9.45E-04
37	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.21E-03
38	GO:2001141: regulation of RNA biosynthetic process	1.21E-03
39	GO:0006020: inositol metabolic process	1.21E-03
40	GO:0009102: biotin biosynthetic process	1.21E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.21E-03
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.21E-03
43	GO:0009650: UV protection	1.21E-03
44	GO:0061077: chaperone-mediated protein folding	1.23E-03
45	GO:0006021: inositol biosynthetic process	1.62E-03
46	GO:0010021: amylopectin biosynthetic process	1.62E-03
47	GO:0015976: carbon utilization	1.62E-03
48	GO:0051781: positive regulation of cell division	1.62E-03
49	GO:0009765: photosynthesis, light harvesting	1.62E-03
50	GO:0015994: chlorophyll metabolic process	1.62E-03
51	GO:0022622: root system development	1.62E-03
52	GO:0009658: chloroplast organization	1.67E-03
53	GO:0016558: protein import into peroxisome matrix	2.07E-03
54	GO:0006564: L-serine biosynthetic process	2.07E-03
55	GO:0010236: plastoquinone biosynthetic process	2.07E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	2.07E-03
57	GO:0031365: N-terminal protein amino acid modification	2.07E-03
58	GO:0010158: abaxial cell fate specification	2.07E-03
59	GO:0042793: transcription from plastid promoter	2.55E-03
60	GO:0010190: cytochrome b6f complex assembly	2.55E-03
61	GO:0042549: photosystem II stabilization	2.55E-03
62	GO:0046855: inositol phosphate dephosphorylation	2.55E-03
63	GO:1901259: chloroplast rRNA processing	3.06E-03
64	GO:0042372: phylloquinone biosynthetic process	3.06E-03
65	GO:0006400: tRNA modification	3.61E-03
66	GO:0032880: regulation of protein localization	3.61E-03
67	GO:0009772: photosynthetic electron transport in photosystem II	3.61E-03
68	GO:0010050: vegetative phase change	3.61E-03
69	GO:0009850: auxin metabolic process	4.19E-03
70	GO:0032508: DNA duplex unwinding	4.19E-03
71	GO:2000070: regulation of response to water deprivation	4.19E-03
72	GO:0010492: maintenance of shoot apical meristem identity	4.19E-03
73	GO:0000105: histidine biosynthetic process	4.19E-03
74	GO:0009231: riboflavin biosynthetic process	4.19E-03
75	GO:0016559: peroxisome fission	4.19E-03
76	GO:0016311: dephosphorylation	4.41E-03
77	GO:0032544: plastid translation	4.79E-03
78	GO:0017004: cytochrome complex assembly	4.79E-03
79	GO:0071482: cellular response to light stimulus	4.79E-03
80	GO:0015996: chlorophyll catabolic process	4.79E-03
81	GO:0007186: G-protein coupled receptor signaling pathway	4.79E-03
82	GO:0009657: plastid organization	4.79E-03
83	GO:0010206: photosystem II repair	5.43E-03
84	GO:0048507: meristem development	5.43E-03
85	GO:0009637: response to blue light	5.87E-03
86	GO:0010205: photoinhibition	6.09E-03
87	GO:0009089: lysine biosynthetic process via diaminopimelate	7.50E-03
88	GO:0009073: aromatic amino acid family biosynthetic process	7.50E-03
89	GO:1903507: negative regulation of nucleic acid-templated transcription	7.50E-03
90	GO:0006352: DNA-templated transcription, initiation	7.50E-03
91	GO:0009773: photosynthetic electron transport in photosystem I	7.50E-03
92	GO:0019684: photosynthesis, light reaction	7.50E-03
93	GO:0006415: translational termination	7.50E-03
94	GO:0010114: response to red light	7.57E-03
95	GO:0006790: sulfur compound metabolic process	8.25E-03
96	GO:0005983: starch catabolic process	8.25E-03
97	GO:0045037: protein import into chloroplast stroma	8.25E-03
98	GO:0010582: floral meristem determinacy	8.25E-03
99	GO:2000012: regulation of auxin polar transport	9.02E-03
100	GO:0006302: double-strand break repair	9.82E-03
101	GO:0010020: chloroplast fission	9.82E-03
102	GO:0006364: rRNA processing	1.02E-02
103	GO:0006412: translation	1.05E-02
104	GO:0010030: positive regulation of seed germination	1.06E-02
105	GO:0046854: phosphatidylinositol phosphorylation	1.06E-02
106	GO:0000162: tryptophan biosynthetic process	1.15E-02
107	GO:0009768: photosynthesis, light harvesting in photosystem I	1.32E-02
108	GO:0009793: embryo development ending in seed dormancy	1.34E-02
109	GO:0051321: meiotic cell cycle	1.42E-02
110	GO:0048511: rhythmic process	1.42E-02
111	GO:0048278: vesicle docking	1.42E-02
112	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.51E-02
113	GO:0019748: secondary metabolic process	1.51E-02
114	GO:0009411: response to UV	1.61E-02
115	GO:0071369: cellular response to ethylene stimulus	1.61E-02
116	GO:0032259: methylation	1.70E-02
117	GO:0006284: base-excision repair	1.70E-02
118	GO:0009561: megagametogenesis	1.70E-02
119	GO:0008284: positive regulation of cell proliferation	1.80E-02
120	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.80E-02
121	GO:0042631: cellular response to water deprivation	1.91E-02
122	GO:0006520: cellular amino acid metabolic process	2.01E-02
123	GO:0010182: sugar mediated signaling pathway	2.01E-02
124	GO:0009958: positive gravitropism	2.01E-02
125	GO:0061025: membrane fusion	2.12E-02
126	GO:0042752: regulation of circadian rhythm	2.12E-02
127	GO:0019252: starch biosynthetic process	2.23E-02
128	GO:0006635: fatty acid beta-oxidation	2.34E-02
129	GO:0071554: cell wall organization or biogenesis	2.34E-02
130	GO:0002229: defense response to oomycetes	2.34E-02
131	GO:0032502: developmental process	2.45E-02
132	GO:0010583: response to cyclopentenone	2.45E-02
133	GO:0009567: double fertilization forming a zygote and endosperm	2.68E-02
134	GO:0008380: RNA splicing	3.02E-02
135	GO:0009627: systemic acquired resistance	3.29E-02
136	GO:0006906: vesicle fusion	3.29E-02
137	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
138	GO:0010218: response to far red light	3.93E-02
139	GO:0042254: ribosome biogenesis	3.98E-02
140	GO:0048527: lateral root development	4.07E-02
141	GO:0009867: jasmonic acid mediated signaling pathway	4.34E-02
142	GO:0006887: exocytosis	4.90E-02
143	GO:0006810: transport	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0042623: ATPase activity, coupled	0.00E+00
12	GO:0005528: FK506 binding	3.13E-08
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.02E-07
14	GO:0016279: protein-lysine N-methyltransferase activity	3.91E-05
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.91E-05
16	GO:0004045: aminoacyl-tRNA hydrolase activity	3.91E-05
17	GO:0080030: methyl indole-3-acetate esterase activity	9.17E-05
18	GO:0019203: carbohydrate phosphatase activity	2.36E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.36E-04
20	GO:0050308: sugar-phosphatase activity	2.36E-04
21	GO:0004813: alanine-tRNA ligase activity	2.36E-04
22	GO:0042586: peptide deformylase activity	2.36E-04
23	GO:0019156: isoamylase activity	5.24E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.24E-04
25	GO:0047746: chlorophyllase activity	5.24E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.24E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.24E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	5.24E-04
29	GO:0008934: inositol monophosphate 1-phosphatase activity	5.24E-04
30	GO:0052833: inositol monophosphate 4-phosphatase activity	5.24E-04
31	GO:0016630: protochlorophyllide reductase activity	5.24E-04
32	GO:0004751: ribose-5-phosphate isomerase activity	8.52E-04
33	GO:0003913: DNA photolyase activity	8.52E-04
34	GO:0016149: translation release factor activity, codon specific	1.21E-03
35	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.21E-03
36	GO:0016851: magnesium chelatase activity	1.21E-03
37	GO:0004659: prenyltransferase activity	1.62E-03
38	GO:0001053: plastid sigma factor activity	1.62E-03
39	GO:0080032: methyl jasmonate esterase activity	1.62E-03
40	GO:0016987: sigma factor activity	1.62E-03
41	GO:0043495: protein anchor	1.62E-03
42	GO:0016788: hydrolase activity, acting on ester bonds	1.72E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	2.07E-03
44	GO:0003959: NADPH dehydrogenase activity	2.07E-03
45	GO:0048038: quinone binding	2.47E-03
46	GO:0004556: alpha-amylase activity	2.55E-03
47	GO:0004462: lactoylglutathione lyase activity	2.55E-03
48	GO:2001070: starch binding	2.55E-03
49	GO:0042578: phosphoric ester hydrolase activity	2.55E-03
50	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.06E-03
51	GO:0019843: rRNA binding	3.16E-03
52	GO:0016597: amino acid binding	3.36E-03
53	GO:0019899: enzyme binding	3.61E-03
54	GO:0009881: photoreceptor activity	3.61E-03
55	GO:0016168: chlorophyll binding	3.76E-03
56	GO:0043022: ribosome binding	4.19E-03
57	GO:0030145: manganese ion binding	5.36E-03
58	GO:0003747: translation release factor activity	5.43E-03
59	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.43E-03
60	GO:0000049: tRNA binding	8.25E-03
61	GO:0004089: carbonate dehydratase activity	9.02E-03
62	GO:0031072: heat shock protein binding	9.02E-03
63	GO:0004565: beta-galactosidase activity	9.02E-03
64	GO:0008083: growth factor activity	9.82E-03
65	GO:0003887: DNA-directed DNA polymerase activity	1.15E-02
66	GO:0031409: pigment binding	1.15E-02
67	GO:0003714: transcription corepressor activity	1.24E-02
68	GO:0008408: 3'-5' exonuclease activity	1.42E-02
69	GO:0051082: unfolded protein binding	1.46E-02
70	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-02
71	GO:0004252: serine-type endopeptidase activity	2.03E-02
72	GO:0008017: microtubule binding	2.65E-02
73	GO:0003684: damaged DNA binding	2.68E-02
74	GO:0016413: O-acetyltransferase activity	2.92E-02
75	GO:0042802: identical protein binding	3.21E-02
76	GO:0008236: serine-type peptidase activity	3.54E-02
77	GO:0008168: methyltransferase activity	3.76E-02
78	GO:0000287: magnesium ion binding	3.83E-02
79	GO:0003993: acid phosphatase activity	4.48E-02
80	GO:0000149: SNARE binding	4.62E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	2.46E-48
5	GO:0009535: chloroplast thylakoid membrane	7.03E-23
6	GO:0009570: chloroplast stroma	4.67E-19
7	GO:0009543: chloroplast thylakoid lumen	1.60E-14
8	GO:0009534: chloroplast thylakoid	2.43E-11
9	GO:0009579: thylakoid	3.30E-10
10	GO:0031977: thylakoid lumen	2.85E-07
11	GO:0009538: photosystem I reaction center	4.36E-06
12	GO:0009941: chloroplast envelope	7.49E-06
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.86E-06
14	GO:0030095: chloroplast photosystem II	3.89E-05
15	GO:0009654: photosystem II oxygen evolving complex	7.67E-05
16	GO:0019898: extrinsic component of membrane	2.24E-04
17	GO:0031361: integral component of thylakoid membrane	2.36E-04
18	GO:0000791: euchromatin	2.36E-04
19	GO:0030870: Mre11 complex	5.24E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.24E-04
21	GO:0005840: ribosome	8.25E-04
22	GO:0009528: plastid inner membrane	8.52E-04
23	GO:0010007: magnesium chelatase complex	8.52E-04
24	GO:0033281: TAT protein transport complex	8.52E-04
25	GO:0042646: plastid nucleoid	1.21E-03
26	GO:0009527: plastid outer membrane	1.62E-03
27	GO:0000795: synaptonemal complex	2.07E-03
28	GO:0009523: photosystem II	2.31E-03
29	GO:0031969: chloroplast membrane	2.32E-03
30	GO:0010287: plastoglobule	2.95E-03
31	GO:0016272: prefoldin complex	3.06E-03
32	GO:0030529: intracellular ribonucleoprotein complex	3.56E-03
33	GO:0009533: chloroplast stromal thylakoid	3.61E-03
34	GO:0009707: chloroplast outer membrane	4.64E-03
35	GO:0042644: chloroplast nucleoid	5.43E-03
36	GO:0055028: cortical microtubule	6.78E-03
37	GO:0032040: small-subunit processome	8.25E-03
38	GO:0009508: plastid chromosome	9.02E-03
39	GO:0030076: light-harvesting complex	1.06E-02
40	GO:0042651: thylakoid membrane	1.32E-02
41	GO:0009532: plastid stroma	1.42E-02
42	GO:0009522: photosystem I	2.12E-02
43	GO:0009504: cell plate	2.23E-02
44	GO:0000785: chromatin	2.45E-02
45	GO:0005778: peroxisomal membrane	2.80E-02
46	GO:0010319: stromule	2.80E-02
47	GO:0009295: nucleoid	2.80E-02
48	GO:0015934: large ribosomal subunit	4.07E-02
49	GO:0031201: SNARE complex	4.90E-02