Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G34460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0098586: cellular response to virus0.00E+00
3GO:0033231: carbohydrate export0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0017009: protein-phycocyanobilin linkage0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0046677: response to antibiotic0.00E+00
9GO:0009661: chromoplast organization0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:0005997: xylulose metabolic process0.00E+00
12GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
13GO:0051246: regulation of protein metabolic process0.00E+00
14GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
15GO:0009658: chloroplast organization2.93E-08
16GO:0080005: photosystem stoichiometry adjustment3.07E-06
17GO:0000256: allantoin catabolic process3.07E-06
18GO:0018298: protein-chromophore linkage3.29E-06
19GO:0010136: ureide catabolic process1.11E-05
20GO:0015979: photosynthesis1.88E-05
21GO:0007623: circadian rhythm1.93E-05
22GO:0006145: purine nucleobase catabolic process2.51E-05
23GO:2001141: regulation of RNA biosynthetic process2.51E-05
24GO:0071483: cellular response to blue light4.54E-05
25GO:0010021: amylopectin biosynthetic process4.54E-05
26GO:0010207: photosystem II assembly4.73E-05
27GO:0015995: chlorophyll biosynthetic process5.20E-05
28GO:0010190: cytochrome b6f complex assembly1.05E-04
29GO:0009644: response to high light intensity1.78E-04
30GO:0048564: photosystem I assembly2.41E-04
31GO:1902334: fructose export from vacuole to cytoplasm2.57E-04
32GO:0010362: negative regulation of anion channel activity by blue light2.57E-04
33GO:0009443: pyridoxal 5'-phosphate salvage2.57E-04
34GO:0015755: fructose transport2.57E-04
35GO:0031426: polycistronic mRNA processing2.57E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process2.57E-04
37GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.57E-04
38GO:1904964: positive regulation of phytol biosynthetic process2.57E-04
39GO:0071277: cellular response to calcium ion2.57E-04
40GO:0015798: myo-inositol transport2.57E-04
41GO:0042371: vitamin K biosynthetic process2.57E-04
42GO:0071461: cellular response to redox state2.57E-04
43GO:0006436: tryptophanyl-tRNA aminoacylation2.57E-04
44GO:0010028: xanthophyll cycle2.57E-04
45GO:0019252: starch biosynthetic process2.66E-04
46GO:0009657: plastid organization2.98E-04
47GO:0055114: oxidation-reduction process4.95E-04
48GO:0006995: cellular response to nitrogen starvation4.99E-04
49GO:0046741: transport of virus in host, tissue to tissue5.68E-04
50GO:0042853: L-alanine catabolic process5.68E-04
51GO:0009915: phloem sucrose loading5.68E-04
52GO:1902326: positive regulation of chlorophyll biosynthetic process5.68E-04
53GO:0042548: regulation of photosynthesis, light reaction5.68E-04
54GO:0006898: receptor-mediated endocytosis5.68E-04
55GO:0034755: iron ion transmembrane transport5.68E-04
56GO:0050992: dimethylallyl diphosphate biosynthetic process5.68E-04
57GO:1904143: positive regulation of carotenoid biosynthetic process5.68E-04
58GO:0080183: response to photooxidative stress5.68E-04
59GO:0016122: xanthophyll metabolic process5.68E-04
60GO:0006352: DNA-templated transcription, initiation5.76E-04
61GO:0009853: photorespiration8.93E-04
62GO:0006013: mannose metabolic process9.22E-04
63GO:0006696: ergosterol biosynthetic process9.22E-04
64GO:0005977: glycogen metabolic process9.22E-04
65GO:0046653: tetrahydrofolate metabolic process1.32E-03
66GO:0010239: chloroplast mRNA processing1.32E-03
67GO:0006809: nitric oxide biosynthetic process1.32E-03
68GO:0006168: adenine salvage1.32E-03
69GO:0050482: arachidonic acid secretion1.32E-03
70GO:0043572: plastid fission1.32E-03
71GO:0010371: regulation of gibberellin biosynthetic process1.32E-03
72GO:0006166: purine ribonucleoside salvage1.32E-03
73GO:0071484: cellular response to light intensity1.32E-03
74GO:0015994: chlorophyll metabolic process1.76E-03
75GO:0006021: inositol biosynthetic process1.76E-03
76GO:0009902: chloroplast relocation1.76E-03
77GO:0010117: photoprotection2.25E-03
78GO:0016120: carotene biosynthetic process2.25E-03
79GO:0009904: chloroplast accumulation movement2.25E-03
80GO:0044209: AMP salvage2.25E-03
81GO:0009791: post-embryonic development2.61E-03
82GO:0009643: photosynthetic acclimation2.77E-03
83GO:0046855: inositol phosphate dephosphorylation2.77E-03
84GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.77E-03
85GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.77E-03
86GO:0071470: cellular response to osmotic stress3.33E-03
87GO:0009903: chloroplast avoidance movement3.33E-03
88GO:0010189: vitamin E biosynthetic process3.33E-03
89GO:0009648: photoperiodism3.33E-03
90GO:0071805: potassium ion transmembrane transport3.59E-03
91GO:0009645: response to low light intensity stimulus3.93E-03
92GO:0048528: post-embryonic root development3.93E-03
93GO:0009642: response to light intensity4.56E-03
94GO:0009704: de-etiolation4.56E-03
95GO:0050821: protein stabilization4.56E-03
96GO:0000105: histidine biosynthetic process4.56E-03
97GO:0006644: phospholipid metabolic process4.56E-03
98GO:0071482: cellular response to light stimulus5.22E-03
99GO:0010100: negative regulation of photomorphogenesis5.22E-03
100GO:0032544: plastid translation5.22E-03
101GO:0009932: cell tip growth5.22E-03
102GO:0009821: alkaloid biosynthetic process5.92E-03
103GO:0034765: regulation of ion transmembrane transport5.92E-03
104GO:0090333: regulation of stomatal closure5.92E-03
105GO:0006783: heme biosynthetic process5.92E-03
106GO:0048507: meristem development5.92E-03
107GO:0006754: ATP biosynthetic process5.92E-03
108GO:0000373: Group II intron splicing5.92E-03
109GO:0098656: anion transmembrane transport5.92E-03
110GO:0007568: aging6.07E-03
111GO:0009638: phototropism6.64E-03
112GO:0006779: porphyrin-containing compound biosynthetic process6.64E-03
113GO:0009098: leucine biosynthetic process6.64E-03
114GO:0009637: response to blue light6.65E-03
115GO:0034599: cellular response to oxidative stress6.96E-03
116GO:0009970: cellular response to sulfate starvation7.40E-03
117GO:0006782: protoporphyrinogen IX biosynthetic process7.40E-03
118GO:0045036: protein targeting to chloroplast7.40E-03
119GO:0009641: shade avoidance7.40E-03
120GO:0006259: DNA metabolic process7.40E-03
121GO:0006265: DNA topological change8.19E-03
122GO:0009773: photosynthetic electron transport in photosystem I8.19E-03
123GO:0006879: cellular iron ion homeostasis8.19E-03
124GO:0008285: negative regulation of cell proliferation8.19E-03
125GO:0009750: response to fructose8.19E-03
126GO:0016485: protein processing8.19E-03
127GO:0010114: response to red light8.59E-03
128GO:0006790: sulfur compound metabolic process9.00E-03
129GO:0006829: zinc II ion transport9.85E-03
130GO:0009767: photosynthetic electron transport chain9.85E-03
131GO:0005986: sucrose biosynthetic process9.85E-03
132GO:0010020: chloroplast fission1.07E-02
133GO:0007015: actin filament organization1.07E-02
134GO:0010223: secondary shoot formation1.07E-02
135GO:0009266: response to temperature stimulus1.07E-02
136GO:0042538: hyperosmotic salinity response1.08E-02
137GO:0019853: L-ascorbic acid biosynthetic process1.16E-02
138GO:0006364: rRNA processing1.16E-02
139GO:0046854: phosphatidylinositol phosphorylation1.16E-02
140GO:0006071: glycerol metabolic process1.25E-02
141GO:0006833: water transport1.25E-02
142GO:0006418: tRNA aminoacylation for protein translation1.45E-02
143GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-02
144GO:0010073: meristem maintenance1.45E-02
145GO:0051302: regulation of cell division1.45E-02
146GO:0006366: transcription from RNA polymerase II promoter1.55E-02
147GO:0051260: protein homooligomerization1.55E-02
148GO:0045454: cell redox homeostasis1.61E-02
149GO:0016226: iron-sulfur cluster assembly1.65E-02
150GO:0009624: response to nematode1.65E-02
151GO:0035428: hexose transmembrane transport1.65E-02
152GO:0019748: secondary metabolic process1.65E-02
153GO:0055085: transmembrane transport1.73E-02
154GO:0010227: floral organ abscission1.76E-02
155GO:0006457: protein folding1.79E-02
156GO:0006817: phosphate ion transport1.86E-02
157GO:0009306: protein secretion1.86E-02
158GO:0009409: response to cold1.86E-02
159GO:0016117: carotenoid biosynthetic process1.97E-02
160GO:0070417: cellular response to cold1.97E-02
161GO:0042335: cuticle development2.09E-02
162GO:0034220: ion transmembrane transport2.09E-02
163GO:0042391: regulation of membrane potential2.09E-02
164GO:0010118: stomatal movement2.09E-02
165GO:0006606: protein import into nucleus2.09E-02
166GO:0009058: biosynthetic process2.19E-02
167GO:0006662: glycerol ether metabolic process2.20E-02
168GO:0010182: sugar mediated signaling pathway2.20E-02
169GO:0046323: glucose import2.20E-02
170GO:0007059: chromosome segregation2.32E-02
171GO:0009646: response to absence of light2.32E-02
172GO:0000302: response to reactive oxygen species2.56E-02
173GO:0010193: response to ozone2.56E-02
174GO:0019761: glucosinolate biosynthetic process2.68E-02
175GO:0010228: vegetative to reproductive phase transition of meristem3.00E-02
176GO:0010286: heat acclimation3.06E-02
177GO:0010027: thylakoid membrane organization3.32E-02
178GO:0009414: response to water deprivation3.33E-02
179GO:0010468: regulation of gene expression3.42E-02
180GO:0009816: defense response to bacterium, incompatible interaction3.46E-02
181GO:0006979: response to oxidative stress3.49E-02
182GO:0042128: nitrate assimilation3.59E-02
183GO:0010411: xyloglucan metabolic process3.73E-02
184GO:0048481: plant ovule development4.01E-02
185GO:0008219: cell death4.01E-02
186GO:0000160: phosphorelay signal transduction system4.16E-02
187GO:0009416: response to light stimulus4.28E-02
188GO:0006811: ion transport4.30E-02
189GO:0010218: response to far red light4.30E-02
190GO:0035556: intracellular signal transduction4.57E-02
191GO:0006865: amino acid transport4.60E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0008115: sarcosine oxidase activity0.00E+00
4GO:0022883: zinc efflux transmembrane transporter activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0015229: L-ascorbic acid transporter activity0.00E+00
7GO:0009976: tocopherol cyclase activity0.00E+00
8GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
9GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
10GO:0004760: serine-pyruvate transaminase activity0.00E+00
11GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
14GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
15GO:0015284: fructose uniporter activity0.00E+00
16GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
17GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
18GO:0050281: serine-glyoxylate transaminase activity0.00E+00
19GO:0004180: carboxypeptidase activity1.11E-05
20GO:0004373: glycogen (starch) synthase activity1.11E-05
21GO:0003913: DNA photolyase activity1.11E-05
22GO:0016851: magnesium chelatase activity2.51E-05
23GO:0008453: alanine-glyoxylate transaminase activity4.54E-05
24GO:0016987: sigma factor activity4.54E-05
25GO:0009011: starch synthase activity4.54E-05
26GO:0001053: plastid sigma factor activity4.54E-05
27GO:0004856: xylulokinase activity2.57E-04
28GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.57E-04
29GO:0016783: sulfurtransferase activity2.57E-04
30GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity2.57E-04
31GO:0004830: tryptophan-tRNA ligase activity2.57E-04
32GO:0051996: squalene synthase activity2.57E-04
33GO:0003879: ATP phosphoribosyltransferase activity2.57E-04
34GO:0030941: chloroplast targeting sequence binding2.57E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity2.57E-04
36GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.57E-04
37GO:0035671: enone reductase activity2.57E-04
38GO:0016168: chlorophyll binding5.09E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity5.68E-04
40GO:0033201: alpha-1,4-glucan synthase activity5.68E-04
41GO:0015173: aromatic amino acid transmembrane transporter activity5.68E-04
42GO:0019156: isoamylase activity5.68E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity5.68E-04
44GO:0005353: fructose transmembrane transporter activity5.68E-04
45GO:0052833: inositol monophosphate 4-phosphatase activity5.68E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.68E-04
47GO:0005366: myo-inositol:proton symporter activity5.68E-04
48GO:0003862: 3-isopropylmalate dehydrogenase activity5.68E-04
49GO:0008883: glutamyl-tRNA reductase activity5.68E-04
50GO:0019904: protein domain specific binding5.76E-04
51GO:0005315: inorganic phosphate transmembrane transporter activity7.47E-04
52GO:0010277: chlorophyllide a oxygenase [overall] activity9.22E-04
53GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.22E-04
54GO:0050307: sucrose-phosphate phosphatase activity9.22E-04
55GO:0032947: protein complex scaffold9.22E-04
56GO:0004848: ureidoglycolate hydrolase activity9.22E-04
57GO:0004148: dihydrolipoyl dehydrogenase activity9.22E-04
58GO:0030267: glyoxylate reductase (NADP) activity9.22E-04
59GO:0004096: catalase activity9.22E-04
60GO:0070402: NADPH binding9.22E-04
61GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.32E-03
62GO:0015175: neutral amino acid transmembrane transporter activity1.32E-03
63GO:0003999: adenine phosphoribosyltransferase activity1.32E-03
64GO:0048027: mRNA 5'-UTR binding1.32E-03
65GO:0004792: thiosulfate sulfurtransferase activity1.32E-03
66GO:0004416: hydroxyacylglutathione hydrolase activity1.32E-03
67GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.32E-03
68GO:0009882: blue light photoreceptor activity1.32E-03
69GO:0022891: substrate-specific transmembrane transporter activity1.65E-03
70GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.76E-03
71GO:0043495: protein anchor1.76E-03
72GO:0051861: glycolipid binding1.76E-03
73GO:0004623: phospholipase A2 activity2.25E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor2.25E-03
75GO:0051538: 3 iron, 4 sulfur cluster binding2.25E-03
76GO:0010181: FMN binding2.43E-03
77GO:0016853: isomerase activity2.43E-03
78GO:0016887: ATPase activity2.54E-03
79GO:0004709: MAP kinase kinase kinase activity2.77E-03
80GO:0004556: alpha-amylase activity2.77E-03
81GO:0000293: ferric-chelate reductase activity2.77E-03
82GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.33E-03
83GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.33E-03
84GO:0004559: alpha-mannosidase activity3.33E-03
85GO:0005242: inward rectifier potassium channel activity3.33E-03
86GO:0008237: metallopeptidase activity3.59E-03
87GO:0009881: photoreceptor activity3.93E-03
88GO:0019899: enzyme binding3.93E-03
89GO:0004033: aldo-keto reductase (NADP) activity4.56E-03
90GO:0008236: serine-type peptidase activity4.99E-03
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.22E-03
92GO:0000989: transcription factor activity, transcription factor binding5.92E-03
93GO:0008889: glycerophosphodiester phosphodiesterase activity5.92E-03
94GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.92E-03
95GO:0050897: cobalt ion binding6.07E-03
96GO:0045309: protein phosphorylated amino acid binding6.64E-03
97GO:0005381: iron ion transmembrane transporter activity6.64E-03
98GO:0016844: strictosidine synthase activity6.64E-03
99GO:0042802: identical protein binding7.58E-03
100GO:0000287: magnesium ion binding9.51E-03
101GO:0015293: symporter activity9.66E-03
102GO:0031072: heat shock protein binding9.85E-03
103GO:0000155: phosphorelay sensor kinase activity9.85E-03
104GO:0051287: NAD binding1.04E-02
105GO:0005506: iron ion binding1.07E-02
106GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.16E-02
107GO:0051119: sugar transmembrane transporter activity1.16E-02
108GO:0031409: pigment binding1.25E-02
109GO:0001046: core promoter sequence-specific DNA binding1.35E-02
110GO:0051536: iron-sulfur cluster binding1.35E-02
111GO:0015079: potassium ion transmembrane transporter activity1.45E-02
112GO:0004176: ATP-dependent peptidase activity1.55E-02
113GO:0005515: protein binding1.73E-02
114GO:0016491: oxidoreductase activity1.77E-02
115GO:0003727: single-stranded RNA binding1.86E-02
116GO:0008514: organic anion transmembrane transporter activity1.86E-02
117GO:0047134: protein-disulfide reductase activity1.97E-02
118GO:0004812: aminoacyl-tRNA ligase activity1.97E-02
119GO:0030551: cyclic nucleotide binding2.09E-02
120GO:0005249: voltage-gated potassium channel activity2.09E-02
121GO:0008080: N-acetyltransferase activity2.20E-02
122GO:0005355: glucose transmembrane transporter activity2.32E-02
123GO:0004791: thioredoxin-disulfide reductase activity2.32E-02
124GO:0015144: carbohydrate transmembrane transporter activity2.48E-02
125GO:0008565: protein transporter activity2.48E-02
126GO:0048038: quinone binding2.56E-02
127GO:0016762: xyloglucan:xyloglucosyl transferase activity2.56E-02
128GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.80E-02
129GO:0005351: sugar:proton symporter activity2.80E-02
130GO:0016791: phosphatase activity2.93E-02
131GO:0015250: water channel activity3.32E-02
132GO:0004721: phosphoprotein phosphatase activity3.73E-02
133GO:0016798: hydrolase activity, acting on glycosyl bonds3.73E-02
134GO:0004222: metalloendopeptidase activity4.30E-02
135GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.45E-02
136GO:0030145: manganese ion binding4.45E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.31E-35
2GO:0009535: chloroplast thylakoid membrane2.56E-16
3GO:0009570: chloroplast stroma2.76E-08
4GO:0009941: chloroplast envelope9.14E-08
5GO:0009706: chloroplast inner membrane4.03E-06
6GO:0009534: chloroplast thylakoid9.10E-06
7GO:0042651: thylakoid membrane9.22E-05
8GO:0031969: chloroplast membrane1.04E-04
9GO:0009782: photosystem I antenna complex2.57E-04
10GO:0045254: pyruvate dehydrogenase complex5.68E-04
11GO:0009569: chloroplast starch grain5.68E-04
12GO:0033281: TAT protein transport complex9.22E-04
13GO:0010007: magnesium chelatase complex9.22E-04
14GO:0005777: peroxisome1.09E-03
15GO:0009579: thylakoid1.18E-03
16GO:0009654: photosystem II oxygen evolving complex1.27E-03
17GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.76E-03
18GO:0009523: photosystem II2.61E-03
19GO:0010287: plastoglobule3.46E-03
20GO:0010319: stromule3.59E-03
21GO:0031359: integral component of chloroplast outer membrane3.93E-03
22GO:0031982: vesicle4.56E-03
23GO:0009501: amyloplast4.56E-03
24GO:0009536: plastid4.99E-03
25GO:0009514: glyoxysome5.22E-03
26GO:0009539: photosystem II reaction center5.22E-03
27GO:0009707: chloroplast outer membrane5.25E-03
28GO:0009705: plant-type vacuole membrane5.59E-03
29GO:0042644: chloroplast nucleoid5.92E-03
30GO:0031977: thylakoid lumen7.91E-03
31GO:0030076: light-harvesting complex1.16E-02
32GO:0043234: protein complex1.25E-02
33GO:0005747: mitochondrial respiratory chain complex I1.42E-02
34GO:0045271: respiratory chain complex I1.45E-02
35GO:0005773: vacuole1.46E-02
36GO:0009532: plastid stroma1.55E-02
37GO:0019898: extrinsic component of membrane2.43E-02
38GO:0005759: mitochondrial matrix2.61E-02
39GO:0009295: nucleoid3.06E-02
40GO:0005778: peroxisomal membrane3.06E-02
41GO:0005887: integral component of plasma membrane3.08E-02
42GO:0005739: mitochondrion4.93E-02
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Gene type



Gene DE type