GO Enrichment Analysis of Co-expressed Genes with
AT2G34357
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 2 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 3 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 4 | GO:0001732: formation of cytoplasmic translation initiation complex | 0.00E+00 |
| 5 | GO:0002188: translation reinitiation | 0.00E+00 |
| 6 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 7 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 8 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 9 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 10 | GO:0006364: rRNA processing | 1.16E-19 |
| 11 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.13E-06 |
| 12 | GO:0010162: seed dormancy process | 5.51E-06 |
| 13 | GO:0009553: embryo sac development | 8.60E-06 |
| 14 | GO:0006412: translation | 1.32E-05 |
| 15 | GO:0042273: ribosomal large subunit biogenesis | 1.84E-05 |
| 16 | GO:0006413: translational initiation | 2.93E-05 |
| 17 | GO:0007005: mitochondrion organization | 3.94E-05 |
| 18 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.27E-05 |
| 19 | GO:0006458: 'de novo' protein folding | 6.27E-05 |
| 20 | GO:0042254: ribosome biogenesis | 9.45E-05 |
| 21 | GO:0043985: histone H4-R3 methylation | 1.52E-04 |
| 22 | GO:1990258: histone glutamine methylation | 1.52E-04 |
| 23 | GO:0006169: adenosine salvage | 1.52E-04 |
| 24 | GO:0031120: snRNA pseudouridine synthesis | 1.52E-04 |
| 25 | GO:0000469: cleavage involved in rRNA processing | 1.52E-04 |
| 26 | GO:0031118: rRNA pseudouridine synthesis | 1.52E-04 |
| 27 | GO:0035266: meristem growth | 1.52E-04 |
| 28 | GO:0030490: maturation of SSU-rRNA | 1.52E-04 |
| 29 | GO:0000494: box C/D snoRNA 3'-end processing | 1.52E-04 |
| 30 | GO:0080009: mRNA methylation | 3.47E-04 |
| 31 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 3.47E-04 |
| 32 | GO:0045041: protein import into mitochondrial intermembrane space | 3.47E-04 |
| 33 | GO:0034470: ncRNA processing | 3.47E-04 |
| 34 | GO:0048569: post-embryonic animal organ development | 3.47E-04 |
| 35 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.64E-04 |
| 36 | GO:0000027: ribosomal large subunit assembly | 5.64E-04 |
| 37 | GO:0045604: regulation of epidermal cell differentiation | 5.68E-04 |
| 38 | GO:0006556: S-adenosylmethionine biosynthetic process | 5.68E-04 |
| 39 | GO:0045039: protein import into mitochondrial inner membrane | 5.68E-04 |
| 40 | GO:0051302: regulation of cell division | 6.20E-04 |
| 41 | GO:0061077: chaperone-mediated protein folding | 6.79E-04 |
| 42 | GO:0009294: DNA mediated transformation | 8.07E-04 |
| 43 | GO:0009855: determination of bilateral symmetry | 8.13E-04 |
| 44 | GO:0051131: chaperone-mediated protein complex assembly | 8.13E-04 |
| 45 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 8.13E-04 |
| 46 | GO:0007276: gamete generation | 8.13E-04 |
| 47 | GO:0008033: tRNA processing | 1.02E-03 |
| 48 | GO:0010501: RNA secondary structure unwinding | 1.02E-03 |
| 49 | GO:0051205: protein insertion into membrane | 1.08E-03 |
| 50 | GO:0000460: maturation of 5.8S rRNA | 1.08E-03 |
| 51 | GO:1900864: mitochondrial RNA modification | 1.08E-03 |
| 52 | GO:0046345: abscisic acid catabolic process | 1.08E-03 |
| 53 | GO:0031167: rRNA methylation | 1.36E-03 |
| 54 | GO:0006461: protein complex assembly | 1.36E-03 |
| 55 | GO:0044209: AMP salvage | 1.36E-03 |
| 56 | GO:0001731: formation of translation preinitiation complex | 1.67E-03 |
| 57 | GO:0000470: maturation of LSU-rRNA | 1.67E-03 |
| 58 | GO:0016554: cytidine to uridine editing | 1.67E-03 |
| 59 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.67E-03 |
| 60 | GO:0042026: protein refolding | 2.01E-03 |
| 61 | GO:0048444: floral organ morphogenesis | 2.01E-03 |
| 62 | GO:0010077: maintenance of inflorescence meristem identity | 2.01E-03 |
| 63 | GO:0009451: RNA modification | 2.21E-03 |
| 64 | GO:0045995: regulation of embryonic development | 2.36E-03 |
| 65 | GO:0080186: developmental vegetative growth | 2.36E-03 |
| 66 | GO:0001510: RNA methylation | 3.12E-03 |
| 67 | GO:0001558: regulation of cell growth | 3.12E-03 |
| 68 | GO:0009735: response to cytokinin | 3.36E-03 |
| 69 | GO:2000024: regulation of leaf development | 3.53E-03 |
| 70 | GO:0010449: root meristem growth | 3.96E-03 |
| 71 | GO:1900865: chloroplast RNA modification | 3.96E-03 |
| 72 | GO:0030422: production of siRNA involved in RNA interference | 4.40E-03 |
| 73 | GO:0006259: DNA metabolic process | 4.40E-03 |
| 74 | GO:0006352: DNA-templated transcription, initiation | 4.86E-03 |
| 75 | GO:0010582: floral meristem determinacy | 5.34E-03 |
| 76 | GO:0006626: protein targeting to mitochondrion | 5.83E-03 |
| 77 | GO:2000012: regulation of auxin polar transport | 5.83E-03 |
| 78 | GO:0006446: regulation of translational initiation | 6.33E-03 |
| 79 | GO:0046686: response to cadmium ion | 6.38E-03 |
| 80 | GO:0010030: positive regulation of seed germination | 6.86E-03 |
| 81 | GO:0016569: covalent chromatin modification | 7.31E-03 |
| 82 | GO:0030150: protein import into mitochondrial matrix | 7.95E-03 |
| 83 | GO:0006396: RNA processing | 7.99E-03 |
| 84 | GO:0010073: meristem maintenance | 8.51E-03 |
| 85 | GO:0006730: one-carbon metabolic process | 9.69E-03 |
| 86 | GO:0009693: ethylene biosynthetic process | 1.03E-02 |
| 87 | GO:0009561: megagametogenesis | 1.09E-02 |
| 88 | GO:0009790: embryo development | 1.14E-02 |
| 89 | GO:0010305: leaf vascular tissue pattern formation | 1.29E-02 |
| 90 | GO:0010197: polar nucleus fusion | 1.29E-02 |
| 91 | GO:0009960: endosperm development | 1.29E-02 |
| 92 | GO:0048825: cotyledon development | 1.42E-02 |
| 93 | GO:0080156: mitochondrial mRNA modification | 1.50E-02 |
| 94 | GO:0016032: viral process | 1.57E-02 |
| 95 | GO:0071281: cellular response to iron ion | 1.64E-02 |
| 96 | GO:0016049: cell growth | 2.26E-02 |
| 97 | GO:0006457: protein folding | 2.31E-02 |
| 98 | GO:0010311: lateral root formation | 2.43E-02 |
| 99 | GO:0009631: cold acclimation | 2.60E-02 |
| 100 | GO:0048527: lateral root development | 2.60E-02 |
| 101 | GO:0006414: translational elongation | 2.76E-02 |
| 102 | GO:0045892: negative regulation of transcription, DNA-templated | 3.15E-02 |
| 103 | GO:0009640: photomorphogenesis | 3.32E-02 |
| 104 | GO:0000154: rRNA modification | 3.61E-02 |
| 105 | GO:0032259: methylation | 3.65E-02 |
| 106 | GO:0009793: embryo development ending in seed dormancy | 3.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 2 | GO:0003723: RNA binding | 1.96E-16 |
| 3 | GO:0000166: nucleotide binding | 1.85E-07 |
| 4 | GO:0003735: structural constituent of ribosome | 9.19E-07 |
| 5 | GO:0030515: snoRNA binding | 9.44E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 1.13E-06 |
| 7 | GO:0003743: translation initiation factor activity | 3.53E-06 |
| 8 | GO:0044183: protein binding involved in protein folding | 7.18E-06 |
| 9 | GO:0008026: ATP-dependent helicase activity | 1.07E-05 |
| 10 | GO:0003746: translation elongation factor activity | 2.37E-05 |
| 11 | GO:0004407: histone deacetylase activity | 2.47E-05 |
| 12 | GO:0003729: mRNA binding | 9.65E-05 |
| 13 | GO:0008135: translation factor activity, RNA binding | 1.36E-04 |
| 14 | GO:0004001: adenosine kinase activity | 1.52E-04 |
| 15 | GO:1990259: histone-glutamine methyltransferase activity | 1.52E-04 |
| 16 | GO:0042134: rRNA primary transcript binding | 1.52E-04 |
| 17 | GO:0030371: translation repressor activity | 1.52E-04 |
| 18 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.52E-04 |
| 19 | GO:0004004: ATP-dependent RNA helicase activity | 2.20E-04 |
| 20 | GO:0003924: GTPase activity | 3.06E-04 |
| 21 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 3.47E-04 |
| 22 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 3.47E-04 |
| 23 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 3.47E-04 |
| 24 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 3.47E-04 |
| 25 | GO:0009982: pseudouridine synthase activity | 3.61E-04 |
| 26 | GO:0005525: GTP binding | 4.92E-04 |
| 27 | GO:0070181: small ribosomal subunit rRNA binding | 5.68E-04 |
| 28 | GO:0008649: rRNA methyltransferase activity | 5.68E-04 |
| 29 | GO:0004478: methionine adenosyltransferase activity | 5.68E-04 |
| 30 | GO:0008469: histone-arginine N-methyltransferase activity | 5.68E-04 |
| 31 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 5.68E-04 |
| 32 | GO:0051082: unfolded protein binding | 1.08E-03 |
| 33 | GO:0019843: rRNA binding | 1.43E-03 |
| 34 | GO:0031369: translation initiation factor binding | 1.67E-03 |
| 35 | GO:0008235: metalloexopeptidase activity | 2.36E-03 |
| 36 | GO:0005524: ATP binding | 2.45E-03 |
| 37 | GO:0050897: cobalt ion binding | 2.88E-03 |
| 38 | GO:0008173: RNA methyltransferase activity | 3.12E-03 |
| 39 | GO:0003678: DNA helicase activity | 3.53E-03 |
| 40 | GO:0008168: methyltransferase activity | 3.56E-03 |
| 41 | GO:0005515: protein binding | 3.93E-03 |
| 42 | GO:0000049: tRNA binding | 5.34E-03 |
| 43 | GO:0004521: endoribonuclease activity | 5.34E-03 |
| 44 | GO:0051087: chaperone binding | 8.51E-03 |
| 45 | GO:0004176: ATP-dependent peptidase activity | 9.10E-03 |
| 46 | GO:0004527: exonuclease activity | 1.29E-02 |
| 47 | GO:0010181: FMN binding | 1.36E-02 |
| 48 | GO:0008483: transaminase activity | 1.79E-02 |
| 49 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.26E-02 |
| 50 | GO:0008236: serine-type peptidase activity | 2.26E-02 |
| 51 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.34E-02 |
| 52 | GO:0005507: copper ion binding | 2.60E-02 |
| 53 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.86E-02 |
| 54 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.05E-02 |
| 55 | GO:0016787: hydrolase activity | 3.48E-02 |
| 56 | GO:0004519: endonuclease activity | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e | 0.00E+00 |
| 4 | GO:0034455: t-UTP complex | 0.00E+00 |
| 5 | GO:0036396: MIS complex | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 6.10E-36 |
| 7 | GO:0032040: small-subunit processome | 6.16E-12 |
| 8 | GO:0005634: nucleus | 4.00E-07 |
| 9 | GO:0005829: cytosol | 7.55E-07 |
| 10 | GO:0030687: preribosome, large subunit precursor | 9.44E-07 |
| 11 | GO:0070545: PeBoW complex | 1.13E-06 |
| 12 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.18E-06 |
| 13 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.04E-05 |
| 14 | GO:0005840: ribosome | 3.26E-05 |
| 15 | GO:0031428: box C/D snoRNP complex | 4.48E-05 |
| 16 | GO:0005618: cell wall | 1.00E-04 |
| 17 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 1.52E-04 |
| 18 | GO:0030688: preribosome, small subunit precursor | 1.52E-04 |
| 19 | GO:0043614: multi-eIF complex | 1.52E-04 |
| 20 | GO:0022626: cytosolic ribosome | 1.53E-04 |
| 21 | GO:0015030: Cajal body | 2.00E-04 |
| 22 | GO:0005759: mitochondrial matrix | 2.83E-04 |
| 23 | GO:0022627: cytosolic small ribosomal subunit | 5.12E-04 |
| 24 | GO:0031429: box H/ACA snoRNP complex | 8.13E-04 |
| 25 | GO:0005774: vacuolar membrane | 8.84E-04 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 8.97E-04 |
| 27 | GO:0005834: heterotrimeric G-protein complex | 9.33E-04 |
| 28 | GO:0022625: cytosolic large ribosomal subunit | 9.67E-04 |
| 29 | GO:0000178: exosome (RNase complex) | 1.36E-03 |
| 30 | GO:0016282: eukaryotic 43S preinitiation complex | 1.67E-03 |
| 31 | GO:0030529: intracellular ribonucleoprotein complex | 1.92E-03 |
| 32 | GO:0033290: eukaryotic 48S preinitiation complex | 2.01E-03 |
| 33 | GO:0031597: cytosolic proteasome complex | 2.01E-03 |
| 34 | GO:0016363: nuclear matrix | 2.01E-03 |
| 35 | GO:0034399: nuclear periphery | 2.73E-03 |
| 36 | GO:0015934: large ribosomal subunit | 2.88E-03 |
| 37 | GO:0008180: COP9 signalosome | 3.53E-03 |
| 38 | GO:0019013: viral nucleocapsid | 5.83E-03 |
| 39 | GO:0009506: plasmodesma | 8.49E-03 |
| 40 | GO:0015935: small ribosomal subunit | 9.10E-03 |
| 41 | GO:0005654: nucleoplasm | 9.46E-03 |
| 42 | GO:0005737: cytoplasm | 1.08E-02 |
| 43 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.09E-02 |
| 44 | GO:0019898: extrinsic component of membrane | 1.42E-02 |
| 45 | GO:0016592: mediator complex | 1.57E-02 |
| 46 | GO:0005743: mitochondrial inner membrane | 3.55E-02 |
| 47 | GO:0005739: mitochondrion | 4.44E-02 |
| 48 | GO:0005681: spliceosomal complex | 4.63E-02 |
| 49 | GO:0016607: nuclear speck | 4.73E-02 |