co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G33990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0032350: regulation of hormone metabolic process	0.00E+00
3	GO:0009106: lipoate metabolic process	0.00E+00
4	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
5	GO:0036172: thiamine salvage	0.00E+00
6	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
7	GO:0071000: response to magnetism	0.00E+00
8	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
9	GO:0046460: neutral lipid biosynthetic process	0.00E+00
10	GO:0048856: anatomical structure development	0.00E+00
11	GO:0016576: histone dephosphorylation	0.00E+00
12	GO:0046085: adenosine metabolic process	0.00E+00
13	GO:0006907: pinocytosis	0.00E+00
14	GO:0015739: sialic acid transport	0.00E+00
15	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
16	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
17	GO:0045740: positive regulation of DNA replication	0.00E+00
18	GO:0009249: protein lipoylation	0.00E+00
19	GO:0010343: singlet oxygen-mediated programmed cell death	1.81E-06
20	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.81E-06
21	GO:0034970: histone H3-R2 methylation	1.95E-04
22	GO:0034972: histone H3-R26 methylation	1.95E-04
23	GO:1902265: abscisic acid homeostasis	1.95E-04
24	GO:0034971: histone H3-R17 methylation	1.95E-04
25	GO:0033206: meiotic cytokinesis	1.95E-04
26	GO:0072387: flavin adenine dinucleotide metabolic process	1.95E-04
27	GO:0015780: nucleotide-sugar transport	2.40E-04
28	GO:0016126: sterol biosynthetic process	2.82E-04
29	GO:0043039: tRNA aminoacylation	4.38E-04
30	GO:1901529: positive regulation of anion channel activity	4.38E-04
31	GO:0044419: interspecies interaction between organisms	4.38E-04
32	GO:0010617: circadian regulation of calcium ion oscillation	4.38E-04
33	GO:0099402: plant organ development	4.38E-04
34	GO:0035335: peptidyl-tyrosine dephosphorylation	4.38E-04
35	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.38E-04
36	GO:0032259: methylation	5.40E-04
37	GO:0031022: nuclear migration along microfilament	7.14E-04
38	GO:1902448: positive regulation of shade avoidance	7.14E-04
39	GO:1901672: positive regulation of systemic acquired resistance	7.14E-04
40	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.14E-04
41	GO:0009150: purine ribonucleotide metabolic process	7.14E-04
42	GO:0071492: cellular response to UV-A	7.14E-04
43	GO:0045739: positive regulation of DNA repair	7.14E-04
44	GO:0010476: gibberellin mediated signaling pathway	7.14E-04
45	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.14E-04
46	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.14E-04
47	GO:2000377: regulation of reactive oxygen species metabolic process	7.89E-04
48	GO:0033014: tetrapyrrole biosynthetic process	1.02E-03
49	GO:1901332: negative regulation of lateral root development	1.02E-03
50	GO:0006882: cellular zinc ion homeostasis	1.02E-03
51	GO:0042274: ribosomal small subunit biogenesis	1.35E-03
52	GO:0031935: regulation of chromatin silencing	1.35E-03
53	GO:0009765: photosynthesis, light harvesting	1.35E-03
54	GO:0008295: spermidine biosynthetic process	1.35E-03
55	GO:0006749: glutathione metabolic process	1.35E-03
56	GO:1902347: response to strigolactone	1.35E-03
57	GO:0009902: chloroplast relocation	1.35E-03
58	GO:0034613: cellular protein localization	1.35E-03
59	GO:0009956: radial pattern formation	1.35E-03
60	GO:0006808: regulation of nitrogen utilization	1.35E-03
61	GO:0071486: cellular response to high light intensity	1.35E-03
62	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.35E-03
63	GO:0009958: positive gravitropism	1.53E-03
64	GO:0000304: response to singlet oxygen	1.72E-03
65	GO:0010117: photoprotection	1.72E-03
66	GO:0046283: anthocyanin-containing compound metabolic process	1.72E-03
67	GO:0009229: thiamine diphosphate biosynthetic process	1.72E-03
68	GO:0009107: lipoate biosynthetic process	1.72E-03
69	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.12E-03
70	GO:0031053: primary miRNA processing	2.12E-03
71	GO:0045962: positive regulation of development, heterochronic	2.12E-03
72	GO:1901371: regulation of leaf morphogenesis	2.12E-03
73	GO:0060918: auxin transport	2.12E-03
74	GO:0000741: karyogamy	2.12E-03
75	GO:0009228: thiamine biosynthetic process	2.12E-03
76	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.12E-03
77	GO:0016070: RNA metabolic process	2.12E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.54E-03
79	GO:0034389: lipid particle organization	2.54E-03
80	GO:2000033: regulation of seed dormancy process	2.54E-03
81	GO:0009099: valine biosynthetic process	2.54E-03
82	GO:0009903: chloroplast avoidance movement	2.54E-03
83	GO:0048444: floral organ morphogenesis	2.54E-03
84	GO:0010310: regulation of hydrogen peroxide metabolic process	2.54E-03
85	GO:0010029: regulation of seed germination	2.87E-03
86	GO:0007050: cell cycle arrest	3.00E-03
87	GO:0080111: DNA demethylation	3.00E-03
88	GO:0006826: iron ion transport	3.00E-03
89	GO:0030026: cellular manganese ion homeostasis	3.00E-03
90	GO:0000082: G1/S transition of mitotic cell cycle	3.00E-03
91	GO:0051510: regulation of unidimensional cell growth	3.00E-03
92	GO:0045292: mRNA cis splicing, via spliceosome	3.47E-03
93	GO:0010928: regulation of auxin mediated signaling pathway	3.47E-03
94	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.47E-03
95	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.47E-03
96	GO:0009704: de-etiolation	3.47E-03
97	GO:0010218: response to far red light	3.89E-03
98	GO:0022900: electron transport chain	3.97E-03
99	GO:0010233: phloem transport	3.97E-03
100	GO:0019430: removal of superoxide radicals	3.97E-03
101	GO:0009097: isoleucine biosynthetic process	3.97E-03
102	GO:0010100: negative regulation of photomorphogenesis	3.97E-03
103	GO:0006526: arginine biosynthetic process	3.97E-03
104	GO:0032544: plastid translation	3.97E-03
105	GO:0009637: response to blue light	4.47E-03
106	GO:0098656: anion transmembrane transport	4.49E-03
107	GO:0019432: triglyceride biosynthetic process	4.49E-03
108	GO:0046916: cellular transition metal ion homeostasis	4.49E-03
109	GO:0006783: heme biosynthetic process	4.49E-03
110	GO:0009056: catabolic process	4.49E-03
111	GO:0009638: phototropism	5.04E-03
112	GO:0006779: porphyrin-containing compound biosynthetic process	5.04E-03
113	GO:0009098: leucine biosynthetic process	5.04E-03
114	GO:0008356: asymmetric cell division	5.04E-03
115	GO:1900426: positive regulation of defense response to bacterium	5.04E-03
116	GO:0006839: mitochondrial transport	5.09E-03
117	GO:0055062: phosphate ion homeostasis	5.61E-03
118	GO:0045036: protein targeting to chloroplast	5.61E-03
119	GO:0006816: calcium ion transport	6.20E-03
120	GO:0008643: carbohydrate transport	6.22E-03
121	GO:0006790: sulfur compound metabolic process	6.81E-03
122	GO:0048366: leaf development	7.20E-03
123	GO:0010102: lateral root morphogenesis	7.44E-03
124	GO:0009785: blue light signaling pathway	7.44E-03
125	GO:0030048: actin filament-based movement	7.44E-03
126	GO:0050826: response to freezing	7.44E-03
127	GO:0010075: regulation of meristem growth	7.44E-03
128	GO:0080188: RNA-directed DNA methylation	8.77E-03
129	GO:0010167: response to nitrate	8.77E-03
130	GO:0010039: response to iron ion	8.77E-03
131	GO:0000162: tryptophan biosynthetic process	9.46E-03
132	GO:0034976: response to endoplasmic reticulum stress	9.46E-03
133	GO:0006071: glycerol metabolic process	9.46E-03
134	GO:0009863: salicylic acid mediated signaling pathway	1.02E-02
135	GO:0010187: negative regulation of seed germination	1.02E-02
136	GO:0006289: nucleotide-excision repair	1.02E-02
137	GO:0006418: tRNA aminoacylation for protein translation	1.09E-02
138	GO:0006306: DNA methylation	1.17E-02
139	GO:0016226: iron-sulfur cluster assembly	1.24E-02
140	GO:0080022: primary root development	1.57E-02
141	GO:0010118: stomatal movement	1.57E-02
142	GO:0010197: polar nucleus fusion	1.65E-02
143	GO:0042752: regulation of circadian rhythm	1.74E-02
144	GO:0009646: response to absence of light	1.74E-02
145	GO:0055072: iron ion homeostasis	1.83E-02
146	GO:0009851: auxin biosynthetic process	1.83E-02
147	GO:0007264: small GTPase mediated signal transduction	2.01E-02
148	GO:0031047: gene silencing by RNA	2.01E-02
149	GO:1901657: glycosyl compound metabolic process	2.11E-02
150	GO:0009739: response to gibberellin	2.15E-02
151	GO:0006470: protein dephosphorylation	2.19E-02
152	GO:0000910: cytokinesis	2.40E-02
153	GO:0042128: nitrate assimilation	2.70E-02
154	GO:0018298: protein-chromophore linkage	3.02E-02
155	GO:0010311: lateral root formation	3.12E-02
156	GO:0009407: toxin catabolic process	3.23E-02
157	GO:0006811: ion transport	3.23E-02
158	GO:0048527: lateral root development	3.34E-02
159	GO:0009631: cold acclimation	3.34E-02
160	GO:0009867: jasmonic acid mediated signaling pathway	3.57E-02
161	GO:0030001: metal ion transport	3.92E-02
162	GO:0046777: protein autophosphorylation	3.93E-02
163	GO:0009640: photomorphogenesis	4.27E-02
164	GO:0010114: response to red light	4.27E-02
165	GO:0009644: response to high light intensity	4.52E-02
166	GO:0000154: rRNA modification	4.64E-02
167	GO:0009636: response to toxic substance	4.64E-02
168	GO:0009965: leaf morphogenesis	4.64E-02
169	GO:0006260: DNA replication	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
2	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
3	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
4	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
7	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
8	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
9	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
10	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
11	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
12	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
13	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
14	GO:0000254: C-4 methylsterol oxidase activity	1.53E-05
15	GO:0008168: methyltransferase activity	1.94E-05
16	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.24E-04
17	GO:0080079: cellobiose glucosidase activity	1.95E-04
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.95E-04
19	GO:0015085: calcium ion transmembrane transporter activity	1.95E-04
20	GO:0004831: tyrosine-tRNA ligase activity	1.95E-04
21	GO:0004325: ferrochelatase activity	1.95E-04
22	GO:0046480: galactolipid galactosyltransferase activity	1.95E-04
23	GO:0004766: spermidine synthase activity	4.38E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.38E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.38E-04
26	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.38E-04
27	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.38E-04
28	GO:0017118: lipoyltransferase activity	4.38E-04
29	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.38E-04
30	GO:0010331: gibberellin binding	4.38E-04
31	GO:0016415: octanoyltransferase activity	4.38E-04
32	GO:0004848: ureidoglycolate hydrolase activity	7.14E-04
33	GO:0019003: GDP binding	7.14E-04
34	GO:0008649: rRNA methyltransferase activity	7.14E-04
35	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	7.14E-04
36	GO:0008469: histone-arginine N-methyltransferase activity	7.14E-04
37	GO:0052656: L-isoleucine transaminase activity	1.02E-03
38	GO:0000339: RNA cap binding	1.02E-03
39	GO:0009882: blue light photoreceptor activity	1.02E-03
40	GO:0047627: adenylylsulfatase activity	1.02E-03
41	GO:0052654: L-leucine transaminase activity	1.02E-03
42	GO:0052655: L-valine transaminase activity	1.02E-03
43	GO:0015369: calcium:proton antiporter activity	1.35E-03
44	GO:0004084: branched-chain-amino-acid transaminase activity	1.35E-03
45	GO:0015368: calcium:cation antiporter activity	1.35E-03
46	GO:0004834: tryptophan synthase activity	1.35E-03
47	GO:0005319: lipid transporter activity	1.35E-03
48	GO:0008080: N-acetyltransferase activity	1.53E-03
49	GO:0003824: catalytic activity	1.81E-03
50	GO:0004518: nuclease activity	2.01E-03
51	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.12E-03
52	GO:0004784: superoxide dismutase activity	2.12E-03
53	GO:0004144: diacylglycerol O-acyltransferase activity	2.54E-03
54	GO:0004525: ribonuclease III activity	3.47E-03
55	GO:0046914: transition metal ion binding	3.97E-03
56	GO:0071949: FAD binding	4.49E-03
57	GO:0000989: transcription factor activity, transcription factor binding	4.49E-03
58	GO:0001055: RNA polymerase II activity	5.04E-03
59	GO:0003723: RNA binding	5.59E-03
60	GO:0008047: enzyme activator activity	5.61E-03
61	GO:0004713: protein tyrosine kinase activity	5.61E-03
62	GO:0004860: protein kinase inhibitor activity	6.20E-03
63	GO:0004129: cytochrome-c oxidase activity	6.20E-03
64	GO:0001054: RNA polymerase I activity	6.20E-03
65	GO:0008378: galactosyltransferase activity	6.81E-03
66	GO:0001056: RNA polymerase III activity	6.81E-03
67	GO:0005315: inorganic phosphate transmembrane transporter activity	7.44E-03
68	GO:0003887: DNA-directed DNA polymerase activity	9.46E-03
69	GO:0042803: protein homodimerization activity	1.03E-02
70	GO:0022857: transmembrane transporter activity	1.04E-02
71	GO:0004176: ATP-dependent peptidase activity	1.17E-02
72	GO:0004386: helicase activity	1.21E-02
73	GO:0003756: protein disulfide isomerase activity	1.40E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.40E-02
75	GO:0004812: aminoacyl-tRNA ligase activity	1.48E-02
76	GO:0005351: sugar:proton symporter activity	1.87E-02
77	GO:0048038: quinone binding	1.92E-02
78	GO:0008237: metallopeptidase activity	2.30E-02
79	GO:0042802: identical protein binding	2.44E-02
80	GO:0016168: chlorophyll binding	2.60E-02
81	GO:0008375: acetylglucosaminyltransferase activity	2.70E-02
82	GO:0016491: oxidoreductase activity	2.87E-02
83	GO:0046982: protein heterodimerization activity	2.91E-02
84	GO:0046872: metal ion binding	3.23E-02
85	GO:0004222: metalloendopeptidase activity	3.23E-02
86	GO:0008422: beta-glucosidase activity	3.80E-02
87	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.80E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	3.92E-02
89	GO:0004364: glutathione transferase activity	4.15E-02
90	GO:0004185: serine-type carboxypeptidase activity	4.27E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0055037: recycling endosome	0.00E+00
3	GO:0009507: chloroplast	7.98E-11
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.95E-04
5	GO:0005845: mRNA cap binding complex	1.95E-04
6	GO:0005846: nuclear cap binding complex	4.38E-04
7	GO:0009536: plastid	6.32E-04
8	GO:0000419: DNA-directed RNA polymerase V complex	7.14E-04
9	GO:0016605: PML body	7.14E-04
10	GO:0009535: chloroplast thylakoid membrane	7.36E-04
11	GO:0042646: plastid nucleoid	1.02E-03
12	GO:0055035: plastid thylakoid membrane	1.72E-03
13	GO:0009840: chloroplastic endopeptidase Clp complex	2.54E-03
14	GO:0000123: histone acetyltransferase complex	3.00E-03
15	GO:0031359: integral component of chloroplast outer membrane	3.00E-03
16	GO:0009707: chloroplast outer membrane	3.53E-03
17	GO:0005811: lipid particle	3.97E-03
18	GO:0046930: pore complex	3.97E-03
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.49E-03
20	GO:0042644: chloroplast nucleoid	4.49E-03
21	GO:0016604: nuclear body	5.04E-03
22	GO:0005769: early endosome	9.46E-03
23	GO:0042651: thylakoid membrane	1.09E-02
24	GO:0009706: chloroplast inner membrane	1.11E-02
25	GO:0005743: mitochondrial inner membrane	1.15E-02
26	GO:0015935: small ribosomal subunit	1.17E-02
27	GO:0005623: cell	1.42E-02
28	GO:0005770: late endosome	1.65E-02
29	GO:0009523: photosystem II	1.83E-02
30	GO:0009295: nucleoid	2.30E-02
31	GO:0009941: chloroplast envelope	3.03E-02
32	GO:0005789: endoplasmic reticulum membrane	3.56E-02
33	GO:0031969: chloroplast membrane	3.68E-02
34	GO:0005819: spindle	3.80E-02