co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G33400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033231: carbohydrate export	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0051246: regulation of protein metabolic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
11	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
12	GO:0015979: photosynthesis	5.15E-07
13	GO:0000256: allantoin catabolic process	7.28E-07
14	GO:0010136: ureide catabolic process	2.75E-06
15	GO:0015995: chlorophyll biosynthetic process	5.88E-06
16	GO:0006145: purine nucleobase catabolic process	6.48E-06
17	GO:0018298: protein-chromophore linkage	7.33E-06
18	GO:0009644: response to high light intensity	2.40E-05
19	GO:0009657: plastid organization	9.46E-05
20	GO:0006419: alanyl-tRNA aminoacylation	1.20E-04
21	GO:1902334: fructose export from vacuole to cytoplasm	1.20E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	1.20E-04
23	GO:0015755: fructose transport	1.20E-04
24	GO:0009443: pyridoxal 5'-phosphate salvage	1.20E-04
25	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.20E-04
26	GO:0031426: polycistronic mRNA processing	1.20E-04
27	GO:0071277: cellular response to calcium ion	1.20E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	1.20E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	1.20E-04
30	GO:0010028: xanthophyll cycle	1.20E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.77E-04
32	GO:0009915: phloem sucrose loading	2.77E-04
33	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.77E-04
34	GO:0009629: response to gravity	2.77E-04
35	GO:0080005: photosystem stoichiometry adjustment	2.77E-04
36	GO:0010042: response to manganese ion	2.77E-04
37	GO:0016122: xanthophyll metabolic process	2.77E-04
38	GO:0006833: water transport	3.68E-04
39	GO:0006013: mannose metabolic process	4.58E-04
40	GO:0090391: granum assembly	4.58E-04
41	GO:0010239: chloroplast mRNA processing	6.57E-04
42	GO:0006809: nitric oxide biosynthetic process	6.57E-04
43	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.57E-04
44	GO:2001141: regulation of RNA biosynthetic process	6.57E-04
45	GO:0071484: cellular response to light intensity	6.57E-04
46	GO:0055085: transmembrane transport	7.26E-04
47	GO:0034220: ion transmembrane transport	7.45E-04
48	GO:0015994: chlorophyll metabolic process	8.72E-04
49	GO:0006021: inositol biosynthetic process	8.72E-04
50	GO:0009902: chloroplast relocation	8.72E-04
51	GO:0010193: response to ozone	9.78E-04
52	GO:0016558: protein import into peroxisome matrix	1.10E-03
53	GO:0010117: photoprotection	1.10E-03
54	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.35E-03
55	GO:0046855: inositol phosphate dephosphorylation	1.35E-03
56	GO:0009117: nucleotide metabolic process	1.35E-03
57	GO:0010027: thylakoid membrane organization	1.39E-03
58	GO:0007623: circadian rhythm	1.42E-03
59	GO:0071470: cellular response to osmotic stress	1.61E-03
60	GO:0010189: vitamin E biosynthetic process	1.61E-03
61	GO:0010196: nonphotochemical quenching	1.89E-03
62	GO:0030026: cellular manganese ion homeostasis	1.89E-03
63	GO:0009645: response to low light intensity stimulus	1.89E-03
64	GO:0006400: tRNA modification	1.89E-03
65	GO:0048564: photosystem I assembly	2.19E-03
66	GO:0009642: response to light intensity	2.19E-03
67	GO:0009704: de-etiolation	2.19E-03
68	GO:0031540: regulation of anthocyanin biosynthetic process	2.19E-03
69	GO:0009637: response to blue light	2.28E-03
70	GO:0009658: chloroplast organization	2.46E-03
71	GO:0071482: cellular response to light stimulus	2.50E-03
72	GO:0017004: cytochrome complex assembly	2.50E-03
73	GO:0098656: anion transmembrane transport	2.82E-03
74	GO:0009821: alkaloid biosynthetic process	2.82E-03
75	GO:0048507: meristem development	2.82E-03
76	GO:0090333: regulation of stomatal closure	2.82E-03
77	GO:0006783: heme biosynthetic process	2.82E-03
78	GO:0006754: ATP biosynthetic process	2.82E-03
79	GO:0000373: Group II intron splicing	2.82E-03
80	GO:0010114: response to red light	2.93E-03
81	GO:0009638: phototropism	3.16E-03
82	GO:0006779: porphyrin-containing compound biosynthetic process	3.16E-03
83	GO:0080167: response to karrikin	3.23E-03
84	GO:0006782: protoporphyrinogen IX biosynthetic process	3.51E-03
85	GO:0006995: cellular response to nitrogen starvation	3.51E-03
86	GO:0006259: DNA metabolic process	3.51E-03
87	GO:0046686: response to cadmium ion	3.56E-03
88	GO:0009773: photosynthetic electron transport in photosystem I	3.88E-03
89	GO:0006265: DNA topological change	3.88E-03
90	GO:0006352: DNA-templated transcription, initiation	3.88E-03
91	GO:0009750: response to fructose	3.88E-03
92	GO:0010224: response to UV-B	4.06E-03
93	GO:0006790: sulfur compound metabolic process	4.26E-03
94	GO:0005986: sucrose biosynthetic process	4.64E-03
95	GO:0006829: zinc II ion transport	4.64E-03
96	GO:0006006: glucose metabolic process	4.64E-03
97	GO:0009767: photosynthetic electron transport chain	4.64E-03
98	GO:0019253: reductive pentose-phosphate cycle	5.04E-03
99	GO:0009266: response to temperature stimulus	5.04E-03
100	GO:0046688: response to copper ion	5.46E-03
101	GO:0019853: L-ascorbic acid biosynthetic process	5.46E-03
102	GO:0046854: phosphatidylinositol phosphorylation	5.46E-03
103	GO:0055114: oxidation-reduction process	5.62E-03
104	GO:0080147: root hair cell development	6.32E-03
105	GO:0008299: isoprenoid biosynthetic process	6.76E-03
106	GO:0007017: microtubule-based process	6.76E-03
107	GO:0009768: photosynthesis, light harvesting in photosystem I	6.76E-03
108	GO:0006825: copper ion transport	6.76E-03
109	GO:0006979: response to oxidative stress	6.86E-03
110	GO:0051260: protein homooligomerization	7.22E-03
111	GO:0035428: hexose transmembrane transport	7.69E-03
112	GO:0019748: secondary metabolic process	7.69E-03
113	GO:0009306: protein secretion	8.66E-03
114	GO:0006413: translational initiation	8.98E-03
115	GO:0070417: cellular response to cold	9.17E-03
116	GO:0000413: protein peptidyl-prolyl isomerization	9.68E-03
117	GO:0010118: stomatal movement	9.68E-03
118	GO:0046323: glucose import	1.02E-02
119	GO:0009646: response to absence of light	1.07E-02
120	GO:0007059: chromosome segregation	1.07E-02
121	GO:0009611: response to wounding	1.13E-02
122	GO:0009791: post-embryonic development	1.13E-02
123	GO:0019252: starch biosynthetic process	1.13E-02
124	GO:0010468: regulation of gene expression	1.15E-02
125	GO:0006635: fatty acid beta-oxidation	1.18E-02
126	GO:0006810: transport	1.21E-02
127	GO:0042254: ribosome biogenesis	1.52E-02
128	GO:0006457: protein folding	1.52E-02
129	GO:0042128: nitrate assimilation	1.66E-02
130	GO:0000160: phosphorelay signal transduction system	1.92E-02
131	GO:0009813: flavonoid biosynthetic process	1.92E-02
132	GO:0046777: protein autophosphorylation	1.99E-02
133	GO:0009853: photorespiration	2.19E-02
134	GO:0034599: cellular response to oxidative stress	2.26E-02
135	GO:0006631: fatty acid metabolic process	2.48E-02
136	GO:0009926: auxin polar transport	2.63E-02
137	GO:0006855: drug transmembrane transport	2.93E-02
138	GO:0009753: response to jasmonic acid	2.94E-02
139	GO:0031347: regulation of defense response	3.01E-02
140	GO:0006812: cation transport	3.09E-02
141	GO:0006364: rRNA processing	3.25E-02
142	GO:0006857: oligopeptide transport	3.41E-02
143	GO:0006417: regulation of translation	3.49E-02
144	GO:0006096: glycolytic process	3.66E-02
145	GO:0048316: seed development	3.74E-02
146	GO:0009409: response to cold	3.89E-02
147	GO:0009624: response to nematode	4.17E-02
148	GO:0006396: RNA processing	4.26E-02
149	GO:0009735: response to cytokinin	4.44E-02
150	GO:0009416: response to light stimulus	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0022883: zinc efflux transmembrane transporter activity	0.00E+00
3	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
4	GO:0009976: tocopherol cyclase activity	0.00E+00
5	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
6	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
7	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
8	GO:0042623: ATPase activity, coupled	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
11	GO:0010486: manganese:proton antiporter activity	0.00E+00
12	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
13	GO:0015284: fructose uniporter activity	0.00E+00
14	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
15	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
16	GO:0070402: NADPH binding	2.75E-06
17	GO:0016853: isomerase activity	5.04E-05
18	GO:0016168: chlorophyll binding	1.19E-04
19	GO:0004451: isocitrate lyase activity	1.20E-04
20	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.20E-04
21	GO:0004813: alanine-tRNA ligase activity	1.20E-04
22	GO:0004008: copper-exporting ATPase activity	1.20E-04
23	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.20E-04
24	GO:0035671: enone reductase activity	1.20E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	2.77E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	2.77E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	2.77E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.77E-04
29	GO:0005353: fructose transmembrane transporter activity	2.77E-04
30	GO:0008883: glutamyl-tRNA reductase activity	2.77E-04
31	GO:0080041: ADP-ribose pyrophosphohydrolase activity	2.77E-04
32	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.58E-04
33	GO:0004848: ureidoglycolate hydrolase activity	4.58E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	4.58E-04
35	GO:0050307: sucrose-phosphate phosphatase activity	4.58E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	4.58E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.58E-04
38	GO:0022891: substrate-specific transmembrane transporter activity	5.89E-04
39	GO:0048027: mRNA 5'-UTR binding	6.57E-04
40	GO:0035529: NADH pyrophosphatase activity	6.57E-04
41	GO:0016851: magnesium chelatase activity	6.57E-04
42	GO:0009882: blue light photoreceptor activity	6.57E-04
43	GO:0008453: alanine-glyoxylate transaminase activity	8.72E-04
44	GO:0016987: sigma factor activity	8.72E-04
45	GO:0043495: protein anchor	8.72E-04
46	GO:0009011: starch synthase activity	8.72E-04
47	GO:0001053: plastid sigma factor activity	8.72E-04
48	GO:0016462: pyrophosphatase activity	1.35E-03
49	GO:0015250: water channel activity	1.39E-03
50	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.61E-03
51	GO:0004559: alpha-mannosidase activity	1.61E-03
52	GO:0046872: metal ion binding	1.74E-03
53	GO:0016887: ATPase activity	1.89E-03
54	GO:0019899: enzyme binding	1.89E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	2.19E-03
56	GO:0005375: copper ion transmembrane transporter activity	2.50E-03
57	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.50E-03
58	GO:0050661: NADP binding	2.59E-03
59	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.82E-03
60	GO:0005384: manganese ion transmembrane transporter activity	3.16E-03
61	GO:0016844: strictosidine synthase activity	3.16E-03
62	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.88E-03
63	GO:0000049: tRNA binding	4.26E-03
64	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.64E-03
65	GO:0008081: phosphoric diester hydrolase activity	4.64E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	4.64E-03
67	GO:0031072: heat shock protein binding	4.64E-03
68	GO:0000155: phosphorelay sensor kinase activity	4.64E-03
69	GO:0051119: sugar transmembrane transporter activity	5.46E-03
70	GO:0031409: pigment binding	5.88E-03
71	GO:0043424: protein histidine kinase binding	6.76E-03
72	GO:0008324: cation transmembrane transporter activity	6.76E-03
73	GO:0008514: organic anion transmembrane transporter activity	8.66E-03
74	GO:0003727: single-stranded RNA binding	8.66E-03
75	GO:0005355: glucose transmembrane transporter activity	1.07E-02
76	GO:0010181: FMN binding	1.07E-02
77	GO:0003743: translation initiation factor activity	1.13E-02
78	GO:0042802: identical protein binding	1.23E-02
79	GO:0008237: metallopeptidase activity	1.41E-02
80	GO:0016597: amino acid binding	1.47E-02
81	GO:0015238: drug transmembrane transporter activity	1.92E-02
82	GO:0050897: cobalt ion binding	2.05E-02
83	GO:0052689: carboxylic ester hydrolase activity	2.05E-02
84	GO:0030145: manganese ion binding	2.05E-02
85	GO:0005506: iron ion binding	2.62E-02
86	GO:0004185: serine-type carboxypeptidase activity	2.63E-02
87	GO:0003924: GTPase activity	2.74E-02
88	GO:0043621: protein self-association	2.78E-02
89	GO:0051537: 2 iron, 2 sulfur cluster binding	2.78E-02
90	GO:0015293: symporter activity	2.85E-02
91	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
92	GO:0009055: electron carrier activity	2.94E-02
93	GO:0051287: NAD binding	3.01E-02
94	GO:0005215: transporter activity	3.03E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.25E-02
96	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.74E-02
97	GO:0016491: oxidoreductase activity	3.76E-02
98	GO:0051082: unfolded protein binding	4.17E-02
99	GO:0005524: ATP binding	4.45E-02
100	GO:0019843: rRNA binding	4.89E-02
101	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.67E-29
2	GO:0009535: chloroplast thylakoid membrane	2.59E-20
3	GO:0009570: chloroplast stroma	2.47E-09
4	GO:0009534: chloroplast thylakoid	6.13E-09
5	GO:0009941: chloroplast envelope	2.26E-08
6	GO:0009579: thylakoid	1.30E-06
7	GO:0009654: photosystem II oxygen evolving complex	1.71E-05
8	GO:0009706: chloroplast inner membrane	7.23E-05
9	GO:0009543: chloroplast thylakoid lumen	1.09E-04
10	GO:0009782: photosystem I antenna complex	1.20E-04
11	GO:0009515: granal stacked thylakoid	1.20E-04
12	GO:0031977: thylakoid lumen	2.82E-04
13	GO:0030095: chloroplast photosystem II	2.94E-04
14	GO:0042651: thylakoid membrane	4.51E-04
15	GO:0010007: magnesium chelatase complex	4.58E-04
16	GO:0033281: TAT protein transport complex	4.58E-04
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	8.72E-04
18	GO:0030286: dynein complex	8.72E-04
19	GO:0010287: plastoglobule	8.92E-04
20	GO:0009523: photosystem II	9.17E-04
21	GO:0019898: extrinsic component of membrane	9.17E-04
22	GO:0016020: membrane	1.17E-03
23	GO:0005778: peroxisomal membrane	1.24E-03
24	GO:0009705: plant-type vacuole membrane	1.42E-03
25	GO:0009533: chloroplast stromal thylakoid	1.89E-03
26	GO:0009539: photosystem II reaction center	2.50E-03
27	GO:0042644: chloroplast nucleoid	2.82E-03
28	GO:0030076: light-harvesting complex	5.46E-03
29	GO:0043234: protein complex	5.88E-03
30	GO:0005770: late endosome	1.02E-02
31	GO:0016021: integral component of membrane	1.34E-02
32	GO:0010319: stromule	1.41E-02
33	GO:0009295: nucleoid	1.41E-02
34	GO:0048046: apoplast	1.55E-02
35	GO:0031969: chloroplast membrane	1.86E-02
36	GO:0015934: large ribosomal subunit	2.05E-02
37	GO:0031902: late endosome membrane	2.48E-02
38	GO:0005773: vacuole	2.94E-02
39	GO:0005886: plasma membrane	3.50E-02
40	GO:0009505: plant-type cell wall	3.54E-02
41	GO:0005887: integral component of plasma membrane	3.72E-02
42	GO:0005747: mitochondrial respiratory chain complex I	3.74E-02
43	GO:0005783: endoplasmic reticulum	4.61E-02
44	GO:0005623: cell	4.99E-02