co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G33255

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:2000013: regulation of arginine biosynthetic process via ornithine	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0042304: regulation of fatty acid biosynthetic process	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0016120: carotene biosynthetic process	8.77E-07
7	GO:0010190: cytochrome b6f complex assembly	1.70E-06
8	GO:0080005: photosystem stoichiometry adjustment	3.83E-06
9	GO:0048564: photosystem I assembly	7.22E-06
10	GO:0006013: mannose metabolic process	1.37E-05
11	GO:0010207: photosystem II assembly	6.11E-05
12	GO:0009658: chloroplast organization	9.29E-05
13	GO:0016117: carotenoid biosynthetic process	2.22E-04
14	GO:0034971: histone H3-R17 methylation	2.89E-04
15	GO:0042371: vitamin K biosynthetic process	2.89E-04
16	GO:0071461: cellular response to redox state	2.89E-04
17	GO:0048438: floral whorl development	2.89E-04
18	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.89E-04
19	GO:0034970: histone H3-R2 methylation	2.89E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	2.89E-04
21	GO:0034972: histone H3-R26 methylation	2.89E-04
22	GO:0032544: plastid translation	3.53E-04
23	GO:0010220: positive regulation of vernalization response	6.34E-04
24	GO:1904143: positive regulation of carotenoid biosynthetic process	6.34E-04
25	GO:0080183: response to photooxidative stress	6.34E-04
26	GO:0016122: xanthophyll metabolic process	6.34E-04
27	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	6.34E-04
28	GO:0080185: effector dependent induction by symbiont of host immune response	6.34E-04
29	GO:0060359: response to ammonium ion	6.34E-04
30	GO:0034755: iron ion transmembrane transport	6.34E-04
31	GO:2000071: regulation of defense response by callose deposition	6.34E-04
32	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.34E-04
33	GO:0009150: purine ribonucleotide metabolic process	1.03E-03
34	GO:0006696: ergosterol biosynthetic process	1.03E-03
35	GO:0043157: response to cation stress	1.03E-03
36	GO:0008652: cellular amino acid biosynthetic process	1.03E-03
37	GO:0050482: arachidonic acid secretion	1.47E-03
38	GO:2001141: regulation of RNA biosynthetic process	1.47E-03
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.47E-03
40	GO:0009067: aspartate family amino acid biosynthetic process	1.47E-03
41	GO:0009963: positive regulation of flavonoid biosynthetic process	1.47E-03
42	GO:0009647: skotomorphogenesis	1.47E-03
43	GO:0033014: tetrapyrrole biosynthetic process	1.47E-03
44	GO:0016226: iron-sulfur cluster assembly	1.79E-03
45	GO:0009902: chloroplast relocation	1.97E-03
46	GO:0034613: cellular protein localization	1.97E-03
47	GO:0010021: amylopectin biosynthetic process	1.97E-03
48	GO:0006808: regulation of nitrogen utilization	1.97E-03
49	GO:0015743: malate transport	1.97E-03
50	GO:0042274: ribosomal small subunit biogenesis	1.97E-03
51	GO:0019464: glycine decarboxylation via glycine cleavage system	1.97E-03
52	GO:0009765: photosynthesis, light harvesting	1.97E-03
53	GO:0009649: entrainment of circadian clock	1.97E-03
54	GO:0006546: glycine catabolic process	1.97E-03
55	GO:0010118: stomatal movement	2.48E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	2.52E-03
57	GO:0035434: copper ion transmembrane transport	2.52E-03
58	GO:0009229: thiamine diphosphate biosynthetic process	2.52E-03
59	GO:0016123: xanthophyll biosynthetic process	2.52E-03
60	GO:0010117: photoprotection	2.52E-03
61	GO:0046283: anthocyanin-containing compound metabolic process	2.52E-03
62	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.11E-03
63	GO:0009959: negative gravitropism	3.11E-03
64	GO:0006555: methionine metabolic process	3.11E-03
65	GO:0009228: thiamine biosynthetic process	3.11E-03
66	GO:0000060: protein import into nucleus, translocation	3.11E-03
67	GO:0033365: protein localization to organelle	3.11E-03
68	GO:0009117: nucleotide metabolic process	3.11E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	3.74E-03
70	GO:0010077: maintenance of inflorescence meristem identity	3.74E-03
71	GO:0019509: L-methionine salvage from methylthioadenosine	3.74E-03
72	GO:0010076: maintenance of floral meristem identity	3.74E-03
73	GO:0055114: oxidation-reduction process	4.28E-03
74	GO:0010038: response to metal ion	4.41E-03
75	GO:0010161: red light signaling pathway	4.41E-03
76	GO:1900056: negative regulation of leaf senescence	4.41E-03
77	GO:0016126: sterol biosynthetic process	4.76E-03
78	GO:0009704: de-etiolation	5.12E-03
79	GO:0050821: protein stabilization	5.12E-03
80	GO:0009231: riboflavin biosynthetic process	5.12E-03
81	GO:0006644: phospholipid metabolic process	5.12E-03
82	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.12E-03
83	GO:0015995: chlorophyll biosynthetic process	5.61E-03
84	GO:0071482: cellular response to light stimulus	5.87E-03
85	GO:0022900: electron transport chain	5.87E-03
86	GO:0019430: removal of superoxide radicals	5.87E-03
87	GO:0006508: proteolysis	6.14E-03
88	GO:0006783: heme biosynthetic process	6.65E-03
89	GO:0098656: anion transmembrane transport	6.65E-03
90	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.65E-03
91	GO:0046916: cellular transition metal ion homeostasis	6.65E-03
92	GO:0010043: response to zinc ion	7.19E-03
93	GO:0007568: aging	7.19E-03
94	GO:1900426: positive regulation of defense response to bacterium	7.48E-03
95	GO:0009638: phototropism	7.48E-03
96	GO:0006779: porphyrin-containing compound biosynthetic process	7.48E-03
97	GO:0010380: regulation of chlorophyll biosynthetic process	7.48E-03
98	GO:0009688: abscisic acid biosynthetic process	8.33E-03
99	GO:0045036: protein targeting to chloroplast	8.33E-03
100	GO:0009641: shade avoidance	8.33E-03
101	GO:0051555: flavonol biosynthetic process	8.33E-03
102	GO:0006352: DNA-templated transcription, initiation	9.22E-03
103	GO:0009682: induced systemic resistance	9.22E-03
104	GO:0043085: positive regulation of catalytic activity	9.22E-03
105	GO:0006879: cellular iron ion homeostasis	9.22E-03
106	GO:0006790: sulfur compound metabolic process	1.01E-02
107	GO:0010582: floral meristem determinacy	1.01E-02
108	GO:0009718: anthocyanin-containing compound biosynthetic process	1.11E-02
109	GO:0009767: photosynthetic electron transport chain	1.11E-02
110	GO:0009785: blue light signaling pathway	1.11E-02
111	GO:0006807: nitrogen compound metabolic process	1.11E-02
112	GO:0007033: vacuole organization	1.31E-02
113	GO:0000162: tryptophan biosynthetic process	1.41E-02
114	GO:0006825: copper ion transport	1.63E-02
115	GO:0007017: microtubule-based process	1.63E-02
116	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.86E-02
117	GO:0009306: protein secretion	2.10E-02
118	GO:0006662: glycerol ether metabolic process	2.48E-02
119	GO:0006814: sodium ion transport	2.61E-02
120	GO:0019252: starch biosynthetic process	2.75E-02
121	GO:0009851: auxin biosynthetic process	2.75E-02
122	GO:0009791: post-embryonic development	2.75E-02
123	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.88E-02
124	GO:0002229: defense response to oomycetes	2.88E-02
125	GO:0009630: gravitropism	3.02E-02
126	GO:0007264: small GTPase mediated signal transduction	3.02E-02
127	GO:0030163: protein catabolic process	3.16E-02
128	GO:0010286: heat acclimation	3.45E-02
129	GO:0006904: vesicle docking involved in exocytosis	3.45E-02
130	GO:0010228: vegetative to reproductive phase transition of meristem	3.55E-02
131	GO:0010027: thylakoid membrane organization	3.75E-02
132	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.90E-02
133	GO:0009816: defense response to bacterium, incompatible interaction	3.90E-02
134	GO:0048573: photoperiodism, flowering	4.21E-02
135	GO:0006950: response to stress	4.21E-02
136	GO:0018298: protein-chromophore linkage	4.53E-02
137	GO:0000160: phosphorelay signal transduction system	4.69E-02
138	GO:0006811: ion transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0010307: acetylglutamate kinase regulator activity	0.00E+00
6	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
11	GO:0004180: carboxypeptidase activity	1.37E-05
12	GO:0004848: ureidoglycolate hydrolase activity	1.37E-05
13	GO:0048038: quinone binding	2.50E-05
14	GO:0047627: adenylylsulfatase activity	3.07E-05
15	GO:0000254: C-4 methylsterol oxidase activity	3.07E-05
16	GO:0016851: magnesium chelatase activity	3.07E-05
17	GO:0004559: alpha-mannosidase activity	1.74E-04
18	GO:0030941: chloroplast targeting sequence binding	2.89E-04
19	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.89E-04
20	GO:0046906: tetrapyrrole binding	2.89E-04
21	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.89E-04
22	GO:0004325: ferrochelatase activity	2.89E-04
23	GO:0051996: squalene synthase activity	2.89E-04
24	GO:0016783: sulfurtransferase activity	2.89E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.34E-04
26	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	6.34E-04
27	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	6.34E-04
28	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.34E-04
29	GO:0004047: aminomethyltransferase activity	6.34E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	6.34E-04
31	GO:0004412: homoserine dehydrogenase activity	6.34E-04
32	GO:0004046: aminoacylase activity	6.34E-04
33	GO:0015367: oxoglutarate:malate antiporter activity	6.34E-04
34	GO:0035241: protein-arginine omega-N monomethyltransferase activity	6.34E-04
35	GO:0004222: metalloendopeptidase activity	9.24E-04
36	GO:0008469: histone-arginine N-methyltransferase activity	1.03E-03
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.03E-03
38	GO:0004373: glycogen (starch) synthase activity	1.03E-03
39	GO:0032947: protein complex scaffold	1.03E-03
40	GO:0003935: GTP cyclohydrolase II activity	1.03E-03
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.03E-03
42	GO:0005506: iron ion binding	1.37E-03
43	GO:0009882: blue light photoreceptor activity	1.47E-03
44	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.47E-03
45	GO:0004792: thiosulfate sulfurtransferase activity	1.47E-03
46	GO:0004176: ATP-dependent peptidase activity	1.64E-03
47	GO:0001053: plastid sigma factor activity	1.97E-03
48	GO:0004834: tryptophan synthase activity	1.97E-03
49	GO:0051861: glycolipid binding	1.97E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.97E-03
51	GO:0016987: sigma factor activity	1.97E-03
52	GO:0009011: starch synthase activity	1.97E-03
53	GO:0004623: phospholipase A2 activity	2.52E-03
54	GO:0016491: oxidoreductase activity	2.60E-03
55	GO:0008080: N-acetyltransferase activity	2.67E-03
56	GO:0004784: superoxide dismutase activity	3.11E-03
57	GO:0008237: metallopeptidase activity	4.24E-03
58	GO:0016621: cinnamoyl-CoA reductase activity	4.41E-03
59	GO:0019899: enzyme binding	4.41E-03
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-03
61	GO:0005375: copper ion transmembrane transporter activity	5.87E-03
62	GO:0046914: transition metal ion binding	5.87E-03
63	GO:0008236: serine-type peptidase activity	5.91E-03
64	GO:0071949: FAD binding	6.65E-03
65	GO:0005381: iron ion transmembrane transporter activity	7.48E-03
66	GO:0042802: identical protein binding	9.40E-03
67	GO:0005315: inorganic phosphate transmembrane transporter activity	1.11E-02
68	GO:0031072: heat shock protein binding	1.11E-02
69	GO:0000155: phosphorelay sensor kinase activity	1.11E-02
70	GO:0015266: protein channel activity	1.11E-02
71	GO:0008061: chitin binding	1.31E-02
72	GO:0003887: DNA-directed DNA polymerase activity	1.41E-02
73	GO:0051536: iron-sulfur cluster binding	1.52E-02
74	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.68E-02
75	GO:0008514: organic anion transmembrane transporter activity	2.10E-02
76	GO:0047134: protein-disulfide reductase activity	2.23E-02
77	GO:0003924: GTPase activity	2.60E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	2.61E-02
79	GO:0010181: FMN binding	2.61E-02
80	GO:0050662: coenzyme binding	2.61E-02
81	GO:0046872: metal ion binding	2.85E-02
82	GO:0004518: nuclease activity	3.02E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.16E-02
84	GO:0005525: GTP binding	3.27E-02
85	GO:0016887: ATPase activity	4.46E-02
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.45E-27
2	GO:0009535: chloroplast thylakoid membrane	1.82E-14
3	GO:0031969: chloroplast membrane	1.58E-07
4	GO:0009536: plastid	7.77E-06
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.45E-05
6	GO:0031972: chloroplast intermembrane space	2.89E-04
7	GO:0000152: nuclear ubiquitin ligase complex	2.89E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	6.34E-04
9	GO:0009941: chloroplast envelope	1.03E-03
10	GO:0010007: magnesium chelatase complex	1.03E-03
11	GO:0005960: glycine cleavage complex	1.47E-03
12	GO:0009534: chloroplast thylakoid	1.68E-03
13	GO:0009527: plastid outer membrane	1.97E-03
14	GO:0030286: dynein complex	1.97E-03
15	GO:0009517: PSII associated light-harvesting complex II	1.97E-03
16	GO:0055035: plastid thylakoid membrane	2.52E-03
17	GO:0009570: chloroplast stroma	2.72E-03
18	GO:0031359: integral component of chloroplast outer membrane	4.41E-03
19	GO:0009501: amyloplast	5.12E-03
20	GO:0046930: pore complex	5.87E-03
21	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.87E-03
22	GO:0009707: chloroplast outer membrane	6.21E-03
23	GO:0016604: nuclear body	7.48E-03
24	GO:0016021: integral component of membrane	1.05E-02
25	GO:0031966: mitochondrial membrane	1.28E-02
26	GO:0005875: microtubule associated complex	1.41E-02
27	GO:0043234: protein complex	1.41E-02
28	GO:0045271: respiratory chain complex I	1.63E-02
29	GO:0042651: thylakoid membrane	1.63E-02
30	GO:0005747: mitochondrial respiratory chain complex I	1.68E-02
31	GO:0009706: chloroplast inner membrane	1.96E-02
32	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.10E-02
33	GO:0010287: plastoglobule	2.33E-02
34	GO:0005773: vacuole	4.85E-02