Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G32060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
2GO:0046487: glyoxylate metabolic process0.00E+00
3GO:0006384: transcription initiation from RNA polymerase III promoter0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:1990258: histone glutamine methylation0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0000740: nuclear membrane fusion0.00E+00
8GO:0044843: cell cycle G1/S phase transition0.00E+00
9GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
10GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
11GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
12GO:0006412: translation4.48E-173
13GO:0042254: ribosome biogenesis7.82E-64
14GO:0000027: ribosomal large subunit assembly6.10E-13
15GO:0006626: protein targeting to mitochondrion1.75E-08
16GO:0000028: ribosomal small subunit assembly2.28E-08
17GO:0000387: spliceosomal snRNP assembly6.66E-06
18GO:0000398: mRNA splicing, via spliceosome6.86E-06
19GO:0009735: response to cytokinin8.79E-06
20GO:0009967: positive regulation of signal transduction2.27E-05
21GO:0045041: protein import into mitochondrial intermembrane space2.27E-05
22GO:0009955: adaxial/abaxial pattern specification3.10E-05
23GO:0006458: 'de novo' protein folding3.10E-05
24GO:0030150: protein import into mitochondrial matrix6.05E-05
25GO:1902626: assembly of large subunit precursor of preribosome7.33E-05
26GO:0002181: cytoplasmic translation7.33E-05
27GO:0061077: chaperone-mediated protein folding8.83E-05
28GO:0006364: rRNA processing1.04E-04
29GO:0009651: response to salt stress1.93E-04
30GO:0042274: ribosomal small subunit biogenesis2.56E-04
31GO:0031167: rRNA methylation3.84E-04
32GO:0043248: proteasome assembly5.33E-04
33GO:0045040: protein import into mitochondrial outer membrane5.33E-04
34GO:0016070: RNA metabolic process5.33E-04
35GO:0009793: embryo development ending in seed dormancy6.63E-04
36GO:0042026: protein refolding7.05E-04
37GO:0000245: spliceosomal complex assembly7.05E-04
38GO:0006434: seryl-tRNA aminoacylation7.31E-04
39GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.31E-04
40GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.31E-04
41GO:0032365: intracellular lipid transport7.31E-04
42GO:0006407: rRNA export from nucleus7.31E-04
43GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.31E-04
44GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.31E-04
45GO:0006475: internal protein amino acid acetylation7.31E-04
46GO:0015801: aromatic amino acid transport7.31E-04
47GO:0017198: N-terminal peptidyl-serine acetylation7.31E-04
48GO:0030490: maturation of SSU-rRNA7.31E-04
49GO:0001510: RNA methylation1.36E-03
50GO:0048569: post-embryonic animal organ development1.58E-03
51GO:0010198: synergid death1.58E-03
52GO:0015786: UDP-glucose transport1.58E-03
53GO:0051788: response to misfolded protein1.58E-03
54GO:2000072: regulation of defense response to fungus, incompatible interaction1.58E-03
55GO:0010197: polar nucleus fusion1.60E-03
56GO:0080156: mitochondrial mRNA modification2.10E-03
57GO:0006414: translational elongation2.19E-03
58GO:0046686: response to cadmium ion2.60E-03
59GO:0010452: histone H3-K36 methylation2.61E-03
60GO:0006954: inflammatory response2.61E-03
61GO:1904278: positive regulation of wax biosynthetic process2.61E-03
62GO:0009150: purine ribonucleotide metabolic process2.61E-03
63GO:0045793: positive regulation of cell size2.61E-03
64GO:0015783: GDP-fucose transport2.61E-03
65GO:0034227: tRNA thio-modification2.61E-03
66GO:0010476: gibberellin mediated signaling pathway2.61E-03
67GO:0042256: mature ribosome assembly2.61E-03
68GO:0090506: axillary shoot meristem initiation2.61E-03
69GO:0006413: translational initiation2.63E-03
70GO:0006820: anion transport3.01E-03
71GO:0051085: chaperone mediated protein folding requiring cofactor3.80E-03
72GO:0006241: CTP biosynthetic process3.80E-03
73GO:0072334: UDP-galactose transmembrane transport3.80E-03
74GO:0009647: skotomorphogenesis3.80E-03
75GO:0032981: mitochondrial respiratory chain complex I assembly3.80E-03
76GO:0006165: nucleoside diphosphate phosphorylation3.80E-03
77GO:0006228: UTP biosynthetic process3.80E-03
78GO:0006164: purine nucleotide biosynthetic process3.80E-03
79GO:0006168: adenine salvage3.80E-03
80GO:0009855: determination of bilateral symmetry3.80E-03
81GO:0009558: embryo sac cellularization3.80E-03
82GO:0046513: ceramide biosynthetic process3.80E-03
83GO:0032877: positive regulation of DNA endoreduplication3.80E-03
84GO:0033617: mitochondrial respiratory chain complex IV assembly3.80E-03
85GO:0006166: purine ribonucleoside salvage3.80E-03
86GO:0070301: cellular response to hydrogen peroxide3.80E-03
87GO:0006446: regulation of translational initiation3.87E-03
88GO:0006183: GTP biosynthetic process5.13E-03
89GO:0010363: regulation of plant-type hypersensitive response5.13E-03
90GO:0042273: ribosomal large subunit biogenesis5.13E-03
91GO:2000032: regulation of secondary shoot formation5.13E-03
92GO:0051781: positive regulation of cell division5.13E-03
93GO:0045116: protein neddylation6.60E-03
94GO:0071493: cellular response to UV-B6.60E-03
95GO:0019408: dolichol biosynthetic process6.60E-03
96GO:0007029: endoplasmic reticulum organization6.60E-03
97GO:1902183: regulation of shoot apical meristem development6.60E-03
98GO:0044209: AMP salvage6.60E-03
99GO:0071215: cellular response to abscisic acid stimulus7.86E-03
100GO:0040007: growth7.86E-03
101GO:0000470: maturation of LSU-rRNA8.20E-03
102GO:0000741: karyogamy8.20E-03
103GO:0001731: formation of translation preinitiation complex8.20E-03
104GO:0051568: histone H3-K4 methylation8.20E-03
105GO:1901001: negative regulation of response to salt stress9.92E-03
106GO:0000911: cytokinesis by cell plate formation9.92E-03
107GO:0009612: response to mechanical stimulus9.92E-03
108GO:0000054: ribosomal subunit export from nucleus9.92E-03
109GO:0009554: megasporogenesis9.92E-03
110GO:0009648: photoperiodism9.92E-03
111GO:0008033: tRNA processing1.00E-02
112GO:0000413: protein peptidyl-prolyl isomerization1.00E-02
113GO:0009965: leaf morphogenesis1.04E-02
114GO:0080186: developmental vegetative growth1.18E-02
115GO:0009645: response to low light intensity stimulus1.18E-02
116GO:0032880: regulation of protein localization1.18E-02
117GO:0048528: post-embryonic root development1.18E-02
118GO:0009749: response to glucose1.25E-02
119GO:0006635: fatty acid beta-oxidation1.34E-02
120GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.37E-02
121GO:0051603: proteolysis involved in cellular protein catabolic process1.37E-02
122GO:0009690: cytokinin metabolic process1.37E-02
123GO:0050821: protein stabilization1.37E-02
124GO:0031540: regulation of anthocyanin biosynthetic process1.37E-02
125GO:0001558: regulation of cell growth1.58E-02
126GO:0006526: arginine biosynthetic process1.58E-02
127GO:0010204: defense response signaling pathway, resistance gene-independent1.58E-02
128GO:0030968: endoplasmic reticulum unfolded protein response1.58E-02
129GO:0007338: single fertilization1.80E-02
130GO:0009245: lipid A biosynthetic process1.80E-02
131GO:0048507: meristem development1.80E-02
132GO:0006189: 'de novo' IMP biosynthetic process1.80E-02
133GO:0048589: developmental growth1.80E-02
134GO:0015780: nucleotide-sugar transport1.80E-02
135GO:0098656: anion transmembrane transport1.80E-02
136GO:0009553: embryo sac development1.98E-02
137GO:0042761: very long-chain fatty acid biosynthetic process2.02E-02
138GO:0010162: seed dormancy process2.26E-02
139GO:0009870: defense response signaling pathway, resistance gene-dependent2.26E-02
140GO:0045036: protein targeting to chloroplast2.26E-02
141GO:0016441: posttranscriptional gene silencing2.26E-02
142GO:0009409: response to cold2.40E-02
143GO:0006913: nucleocytoplasmic transport2.51E-02
144GO:0015770: sucrose transport2.51E-02
145GO:0010015: root morphogenesis2.51E-02
146GO:0006790: sulfur compound metabolic process2.76E-02
147GO:0010102: lateral root morphogenesis3.02E-02
148GO:0009845: seed germination3.02E-02
149GO:0006511: ubiquitin-dependent protein catabolic process3.25E-02
150GO:0048467: gynoecium development3.30E-02
151GO:0002237: response to molecule of bacterial origin3.30E-02
152GO:0090351: seedling development3.58E-02
153GO:0009908: flower development4.07E-02
154GO:0009116: nucleoside metabolic process4.16E-02
155GO:0009944: polarity specification of adaxial/abaxial axis4.16E-02
156GO:0006406: mRNA export from nucleus4.16E-02
157GO:0006289: nucleotide-excision repair4.16E-02
158GO:0006487: protein N-linked glycosylation4.16E-02
159GO:0008283: cell proliferation4.17E-02
160GO:0051302: regulation of cell division4.46E-02
161GO:0009644: response to high light intensity4.51E-02
162GO:0008643: carbohydrate transport4.51E-02
163GO:0015031: protein transport4.71E-02
164GO:0003333: amino acid transmembrane transport4.77E-02
165GO:0015992: proton transport4.77E-02
166GO:0051260: protein homooligomerization4.77E-02
167GO:0048511: rhythmic process4.77E-02
168GO:0010431: seed maturation4.77E-02
RankGO TermAdjusted P value
1GO:0052873: FMN reductase (NADPH) activity0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0004055: argininosuccinate synthase activity0.00E+00
4GO:1990259: histone-glutamine methyltransferase activity0.00E+00
5GO:0008752: FMN reductase activity0.00E+00
6GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
7GO:0016881: acid-amino acid ligase activity0.00E+00
8GO:0003735: structural constituent of ribosome4.57E-217
9GO:0003729: mRNA binding2.39E-42
10GO:0019843: rRNA binding1.00E-16
11GO:0003723: RNA binding4.63E-08
12GO:0044183: protein binding involved in protein folding1.34E-05
13GO:0001056: RNA polymerase III activity1.81E-05
14GO:0005078: MAP-kinase scaffold activity2.27E-05
15GO:0008649: rRNA methyltransferase activity7.33E-05
16GO:0004298: threonine-type endopeptidase activity8.83E-05
17GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.30E-04
18GO:0008097: 5S rRNA binding1.52E-04
19GO:0001055: RNA polymerase II activity1.64E-04
20GO:0001054: RNA polymerase I activity2.54E-04
21GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.04E-04
22GO:0000824: inositol tetrakisphosphate 3-kinase activity7.31E-04
23GO:1990189: peptide-serine-N-acetyltransferase activity7.31E-04
24GO:0047326: inositol tetrakisphosphate 5-kinase activity7.31E-04
25GO:0004828: serine-tRNA ligase activity7.31E-04
26GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.31E-04
27GO:0048037: cofactor binding7.31E-04
28GO:0005080: protein kinase C binding7.31E-04
29GO:1990190: peptide-glutamate-N-acetyltransferase activity7.31E-04
30GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.31E-04
31GO:0035614: snRNA stem-loop binding7.31E-04
32GO:0016817: hydrolase activity, acting on acid anhydrides7.31E-04
33GO:0008233: peptidase activity7.68E-04
34GO:0030515: snoRNA binding8.99E-04
35GO:0015288: porin activity1.12E-03
36GO:0051082: unfolded protein binding1.13E-03
37GO:0008308: voltage-gated anion channel activity1.36E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.58E-03
39GO:0004750: ribulose-phosphate 3-epimerase activity1.58E-03
40GO:0032934: sterol binding1.58E-03
41GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.58E-03
42GO:0004775: succinate-CoA ligase (ADP-forming) activity1.58E-03
43GO:0030619: U1 snRNA binding1.58E-03
44GO:0004776: succinate-CoA ligase (GDP-forming) activity1.58E-03
45GO:0050291: sphingosine N-acyltransferase activity1.58E-03
46GO:0004618: phosphoglycerate kinase activity1.58E-03
47GO:0019781: NEDD8 activating enzyme activity1.58E-03
48GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.29E-03
49GO:0000166: nucleotide binding2.29E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.61E-03
51GO:0032947: protein complex scaffold2.61E-03
52GO:0070181: small ribosomal subunit rRNA binding2.61E-03
53GO:0005457: GDP-fucose transmembrane transporter activity2.61E-03
54GO:0015462: ATPase-coupled protein transmembrane transporter activity2.61E-03
55GO:0015266: protein channel activity3.43E-03
56GO:0003999: adenine phosphoribosyltransferase activity3.80E-03
57GO:0005460: UDP-glucose transmembrane transporter activity3.80E-03
58GO:0004550: nucleoside diphosphate kinase activity3.80E-03
59GO:0047627: adenylylsulfatase activity3.80E-03
60GO:0003743: translation initiation factor activity3.93E-03
61GO:0070628: proteasome binding5.13E-03
62GO:0010011: auxin binding5.13E-03
63GO:0003746: translation elongation factor activity6.46E-03
64GO:0003697: single-stranded DNA binding6.46E-03
65GO:0005459: UDP-galactose transmembrane transporter activity6.60E-03
66GO:0008641: small protein activating enzyme activity6.60E-03
67GO:0004888: transmembrane signaling receptor activity6.60E-03
68GO:0045547: dehydrodolichyl diphosphate synthase activity6.60E-03
69GO:0005275: amine transmembrane transporter activity6.60E-03
70GO:0031593: polyubiquitin binding8.20E-03
71GO:0031177: phosphopantetheine binding8.20E-03
72GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity8.20E-03
73GO:0008514: organic anion transmembrane transporter activity8.55E-03
74GO:0000035: acyl binding9.92E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity9.92E-03
76GO:0051920: peroxiredoxin activity9.92E-03
77GO:0005338: nucleotide-sugar transmembrane transporter activity1.18E-02
78GO:0008235: metalloexopeptidase activity1.18E-02
79GO:0042162: telomeric DNA binding1.18E-02
80GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.37E-02
81GO:0043022: ribosome binding1.37E-02
82GO:0016209: antioxidant activity1.37E-02
83GO:0008135: translation factor activity, RNA binding1.58E-02
84GO:0000989: transcription factor activity, transcription factor binding1.80E-02
85GO:0008515: sucrose transmembrane transporter activity2.51E-02
86GO:0031072: heat shock protein binding3.02E-02
87GO:0051119: sugar transmembrane transporter activity3.58E-02
88GO:0004407: histone deacetylase activity4.16E-02
89GO:0043130: ubiquitin binding4.16E-02
90GO:0005528: FK506 binding4.16E-02
91GO:0031418: L-ascorbic acid binding4.16E-02
92GO:0051087: chaperone binding4.46E-02
93GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.77E-02
RankGO TermAdjusted P value
1GO:0005832: chaperonin-containing T-complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005840: ribosome3.02E-149
4GO:0022626: cytosolic ribosome1.58E-141
5GO:0022625: cytosolic large ribosomal subunit7.49E-130
6GO:0022627: cytosolic small ribosomal subunit1.56E-92
7GO:0005829: cytosol2.73E-54
8GO:0005730: nucleolus6.49E-50
9GO:0005737: cytoplasm3.14E-44
10GO:0009506: plasmodesma1.50E-31
11GO:0015934: large ribosomal subunit1.17E-21
12GO:0005774: vacuolar membrane9.06E-18
13GO:0016020: membrane6.52E-13
14GO:0015935: small ribosomal subunit1.80E-12
15GO:0005773: vacuole1.56E-08
16GO:0005618: cell wall1.84E-08
17GO:0005732: small nucleolar ribonucleoprotein complex3.76E-08
18GO:0000502: proteasome complex1.04E-06
19GO:0009507: chloroplast1.12E-06
20GO:0005742: mitochondrial outer membrane translocase complex2.85E-06
21GO:0005666: DNA-directed RNA polymerase III complex6.66E-06
22GO:0071011: precatalytic spliceosome6.66E-06
23GO:0071013: catalytic step 2 spliceosome1.34E-05
24GO:0005665: DNA-directed RNA polymerase II, core complex1.81E-05
25GO:0019013: viral nucleocapsid2.40E-05
26GO:0005886: plasma membrane3.04E-05
27GO:0034719: SMN-Sm protein complex7.33E-05
28GO:0005839: proteasome core complex8.83E-05
29GO:0005736: DNA-directed RNA polymerase I complex1.27E-04
30GO:0005685: U1 snRNP1.27E-04
31GO:0005681: spliceosomal complex1.56E-04
32GO:0015030: Cajal body1.64E-04
33GO:0000418: DNA-directed RNA polymerase IV complex2.06E-04
34GO:0005682: U5 snRNP2.56E-04
35GO:0097526: spliceosomal tri-snRNP complex3.84E-04
36GO:0005687: U4 snRNP3.84E-04
37GO:0031428: box C/D snoRNP complex5.33E-04
38GO:0000419: DNA-directed RNA polymerase V complex5.82E-04
39GO:0005689: U12-type spliceosomal complex7.05E-04
40GO:0030686: 90S preribosome7.31E-04
41GO:0005741: mitochondrial outer membrane8.54E-04
42GO:0005834: heterotrimeric G-protein complex9.10E-04
43GO:0005688: U6 snRNP1.12E-03
44GO:0005744: mitochondrial inner membrane presequence translocase complex1.19E-03
45GO:0046540: U4/U6 x U5 tri-snRNP complex1.36E-03
46GO:0046930: pore complex1.36E-03
47GO:0071010: prespliceosome1.58E-03
48GO:0031415: NatA complex1.58E-03
49GO:0005697: telomerase holoenzyme complex1.58E-03
50GO:0005686: U2 snRNP2.27E-03
51GO:0034715: pICln-Sm protein complex2.61E-03
52GO:0005853: eukaryotic translation elongation factor 1 complex2.61E-03
53GO:0008541: proteasome regulatory particle, lid subcomplex2.62E-03
54GO:0032040: small-subunit processome3.01E-03
55GO:1990726: Lsm1-7-Pat1 complex3.80E-03
56GO:0016593: Cdc73/Paf1 complex5.13E-03
57GO:0005758: mitochondrial intermembrane space5.39E-03
58GO:0016282: eukaryotic 43S preinitiation complex8.20E-03
59GO:0000974: Prp19 complex8.20E-03
60GO:0000243: commitment complex8.20E-03
61GO:0005622: intracellular8.94E-03
62GO:0033290: eukaryotic 48S preinitiation complex9.92E-03
63GO:0016272: prefoldin complex9.92E-03
64GO:0071004: U2-type prespliceosome1.37E-02
65GO:0019773: proteasome core complex, alpha-subunit complex1.58E-02
66GO:0005743: mitochondrial inner membrane1.63E-02
67GO:0030529: intracellular ribonucleoprotein complex1.95E-02
68GO:0016604: nuclear body2.02E-02
69GO:0005788: endoplasmic reticulum lumen2.07E-02
70GO:0005852: eukaryotic translation initiation factor 3 complex2.51E-02
71GO:0048471: perinuclear region of cytoplasm2.51E-02
72GO:0009707: chloroplast outer membrane2.55E-02
73GO:0031307: integral component of mitochondrial outer membrane2.76E-02
74GO:0009508: plastid chromosome3.02E-02
75GO:0005759: mitochondrial matrix3.63E-02
76GO:0009536: plastid4.39E-02
77GO:0070469: respiratory chain4.46E-02
78GO:0005783: endoplasmic reticulum4.70E-02
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Gene type



Gene DE type