GO Enrichment Analysis of Co-expressed Genes with
AT2G31840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:1901259: chloroplast rRNA processing | 1.00E-05 |
| 3 | GO:0000476: maturation of 4.5S rRNA | 4.88E-05 |
| 4 | GO:0000967: rRNA 5'-end processing | 4.88E-05 |
| 5 | GO:0034470: ncRNA processing | 1.20E-04 |
| 6 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.20E-04 |
| 7 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.01E-04 |
| 8 | GO:2001141: regulation of RNA biosynthetic process | 3.01E-04 |
| 9 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.01E-04 |
| 10 | GO:0009102: biotin biosynthetic process | 3.01E-04 |
| 11 | GO:0010239: chloroplast mRNA processing | 3.01E-04 |
| 12 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 3.01E-04 |
| 13 | GO:0009451: RNA modification | 3.29E-04 |
| 14 | GO:0006221: pyrimidine nucleotide biosynthetic process | 4.04E-04 |
| 15 | GO:0016558: protein import into peroxisome matrix | 5.13E-04 |
| 16 | GO:0010190: cytochrome b6f complex assembly | 6.29E-04 |
| 17 | GO:0000105: histidine biosynthetic process | 1.01E-03 |
| 18 | GO:0009642: response to light intensity | 1.01E-03 |
| 19 | GO:0017004: cytochrome complex assembly | 1.14E-03 |
| 20 | GO:0071482: cellular response to light stimulus | 1.14E-03 |
| 21 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.75E-03 |
| 22 | GO:0006352: DNA-templated transcription, initiation | 1.75E-03 |
| 23 | GO:0006810: transport | 1.96E-03 |
| 24 | GO:0019853: L-ascorbic acid biosynthetic process | 2.44E-03 |
| 25 | GO:0010030: positive regulation of seed germination | 2.44E-03 |
| 26 | GO:0006863: purine nucleobase transport | 2.62E-03 |
| 27 | GO:0000162: tryptophan biosynthetic process | 2.62E-03 |
| 28 | GO:0048511: rhythmic process | 3.20E-03 |
| 29 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 3.41E-03 |
| 30 | GO:0071369: cellular response to ethylene stimulus | 3.61E-03 |
| 31 | GO:0006012: galactose metabolic process | 3.61E-03 |
| 32 | GO:0009793: embryo development ending in seed dormancy | 3.90E-03 |
| 33 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 4.04E-03 |
| 34 | GO:0000413: protein peptidyl-prolyl isomerization | 4.26E-03 |
| 35 | GO:0042631: cellular response to water deprivation | 4.26E-03 |
| 36 | GO:0048868: pollen tube development | 4.48E-03 |
| 37 | GO:0009658: chloroplast organization | 4.55E-03 |
| 38 | GO:0006814: sodium ion transport | 4.71E-03 |
| 39 | GO:0042752: regulation of circadian rhythm | 4.71E-03 |
| 40 | GO:0006635: fatty acid beta-oxidation | 5.18E-03 |
| 41 | GO:0016311: dephosphorylation | 7.75E-03 |
| 42 | GO:0032259: methylation | 7.96E-03 |
| 43 | GO:0009817: defense response to fungus, incompatible interaction | 8.03E-03 |
| 44 | GO:0016042: lipid catabolic process | 8.08E-03 |
| 45 | GO:0009637: response to blue light | 9.47E-03 |
| 46 | GO:0010114: response to red light | 1.13E-02 |
| 47 | GO:0031347: regulation of defense response | 1.30E-02 |
| 48 | GO:0009553: embryo sac development | 1.76E-02 |
| 49 | GO:0006457: protein folding | 1.92E-02 |
| 50 | GO:0009790: embryo development | 2.35E-02 |
| 51 | GO:0010468: regulation of gene expression | 3.00E-02 |
| 52 | GO:0042254: ribosome biogenesis | 3.66E-02 |
| 53 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.31E-02 |
| 54 | GO:0044550: secondary metabolite biosynthetic process | 4.47E-02 |
| 55 | GO:0015979: photosynthesis | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 3 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 4 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 5 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.31E-05 |
| 6 | GO:0004751: ribose-5-phosphate isomerase activity | 2.06E-04 |
| 7 | GO:0008508: bile acid:sodium symporter activity | 3.01E-04 |
| 8 | GO:0009041: uridylate kinase activity | 3.01E-04 |
| 9 | GO:0001053: plastid sigma factor activity | 4.04E-04 |
| 10 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.04E-04 |
| 11 | GO:0080032: methyl jasmonate esterase activity | 4.04E-04 |
| 12 | GO:0016987: sigma factor activity | 4.04E-04 |
| 13 | GO:0003723: RNA binding | 5.42E-04 |
| 14 | GO:0016788: hydrolase activity, acting on ester bonds | 5.70E-04 |
| 15 | GO:0080030: methyl indole-3-acetate esterase activity | 6.29E-04 |
| 16 | GO:0042578: phosphoric ester hydrolase activity | 6.29E-04 |
| 17 | GO:0008195: phosphatidate phosphatase activity | 7.50E-04 |
| 18 | GO:0003993: acid phosphatase activity | 7.60E-04 |
| 19 | GO:0004033: aldo-keto reductase (NADP) activity | 1.01E-03 |
| 20 | GO:0004519: endonuclease activity | 1.30E-03 |
| 21 | GO:0004521: endoribonuclease activity | 1.91E-03 |
| 22 | GO:0019843: rRNA binding | 2.16E-03 |
| 23 | GO:0005528: FK506 binding | 2.81E-03 |
| 24 | GO:0003714: transcription corepressor activity | 2.81E-03 |
| 25 | GO:0043424: protein histidine kinase binding | 3.01E-03 |
| 26 | GO:0005345: purine nucleobase transmembrane transporter activity | 3.01E-03 |
| 27 | GO:0008168: methyltransferase activity | 4.38E-03 |
| 28 | GO:0048038: quinone binding | 5.18E-03 |
| 29 | GO:0052689: carboxylic ester hydrolase activity | 6.22E-03 |
| 30 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.04E-02 |
| 31 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.20E-02 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.40E-02 |
| 33 | GO:0008026: ATP-dependent helicase activity | 1.87E-02 |
| 34 | GO:0008017: microtubule binding | 2.73E-02 |
| 35 | GO:0005215: transporter activity | 3.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.48E-15 |
| 2 | GO:0042646: plastid nucleoid | 1.36E-06 |
| 3 | GO:0042644: chloroplast nucleoid | 2.98E-05 |
| 4 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.20E-04 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.55E-04 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.07E-04 |
| 7 | GO:0009533: chloroplast stromal thylakoid | 8.75E-04 |
| 8 | GO:0009538: photosystem I reaction center | 1.01E-03 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.28E-03 |
| 10 | GO:0055028: cortical microtubule | 1.59E-03 |
| 11 | GO:0009508: plastid chromosome | 2.08E-03 |
| 12 | GO:0009534: chloroplast thylakoid | 3.06E-03 |
| 13 | GO:0009570: chloroplast stroma | 5.30E-03 |
| 14 | GO:0005778: peroxisomal membrane | 6.16E-03 |
| 15 | GO:0009295: nucleoid | 6.16E-03 |
| 16 | GO:0015934: large ribosomal subunit | 8.88E-03 |
| 17 | GO:0031977: thylakoid lumen | 1.07E-02 |
| 18 | GO:0009941: chloroplast envelope | 1.14E-02 |
| 19 | GO:0009579: thylakoid | 1.77E-02 |
| 20 | GO:0010287: plastoglobule | 2.02E-02 |
| 21 | GO:0031225: anchored component of membrane | 2.31E-02 |
| 22 | GO:0005840: ribosome | 3.14E-02 |
| 23 | GO:0005874: microtubule | 4.11E-02 |