co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010412: mannan metabolic process	0.00E+00
2	GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process	0.00E+00
3	GO:0006203: dGTP catabolic process	0.00E+00
4	GO:0070328: triglyceride homeostasis	0.00E+00
5	GO:0071475: cellular hyperosmotic salinity response	0.00E+00
6	GO:0055091: phospholipid homeostasis	0.00E+00
7	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
8	GO:0080021: response to benzoic acid	0.00E+00
9	GO:0090630: activation of GTPase activity	2.10E-05
10	GO:1902265: abscisic acid homeostasis	3.65E-04
11	GO:0097298: regulation of nucleus size	3.65E-04
12	GO:0046938: phytochelatin biosynthetic process	3.65E-04
13	GO:0009865: pollen tube adhesion	3.65E-04
14	GO:0031338: regulation of vesicle fusion	3.65E-04
15	GO:0042631: cellular response to water deprivation	3.89E-04
16	GO:0009819: drought recovery	4.05E-04
17	GO:0045489: pectin biosynthetic process	4.29E-04
18	GO:0031407: oxylipin metabolic process	7.94E-04
19	GO:0010289: homogalacturonan biosynthetic process	7.94E-04
20	GO:0055088: lipid homeostasis	7.94E-04
21	GO:0006898: receptor-mediated endocytosis	7.94E-04
22	GO:0015786: UDP-glucose transport	7.94E-04
23	GO:1901679: nucleotide transmembrane transport	7.94E-04
24	GO:0010507: negative regulation of autophagy	7.94E-04
25	GO:0052544: defense response by callose deposition in cell wall	9.42E-04
26	GO:0018107: peptidyl-threonine phosphorylation	1.22E-03
27	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.29E-03
28	GO:0015783: GDP-fucose transport	1.29E-03
29	GO:0080121: AMP transport	1.29E-03
30	GO:0042344: indole glucosinolate catabolic process	1.29E-03
31	GO:0046786: viral replication complex formation and maintenance	1.29E-03
32	GO:0044210: 'de novo' CTP biosynthetic process	1.29E-03
33	GO:0016045: detection of bacterium	1.29E-03
34	GO:0010359: regulation of anion channel activity	1.29E-03
35	GO:0010288: response to lead ion	1.29E-03
36	GO:0070588: calcium ion transmembrane transport	1.53E-03
37	GO:0016051: carbohydrate biosynthetic process	1.69E-03
38	GO:0055089: fatty acid homeostasis	1.85E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.85E-03
40	GO:0070301: cellular response to hydrogen peroxide	1.85E-03
41	GO:0072334: UDP-galactose transmembrane transport	1.85E-03
42	GO:0015700: arsenite transport	1.85E-03
43	GO:0080024: indolebutyric acid metabolic process	1.85E-03
44	GO:0031408: oxylipin biosynthetic process	2.30E-03
45	GO:0009687: abscisic acid metabolic process	2.49E-03
46	GO:0046345: abscisic acid catabolic process	2.49E-03
47	GO:0015689: molybdate ion transport	2.49E-03
48	GO:0051365: cellular response to potassium ion starvation	2.49E-03
49	GO:0046355: mannan catabolic process	2.49E-03
50	GO:0022622: root system development	2.49E-03
51	GO:0071585: detoxification of cadmium ion	2.49E-03
52	GO:0015867: ATP transport	2.49E-03
53	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.74E-03
54	GO:0001944: vasculature development	2.74E-03
55	GO:0006470: protein dephosphorylation	2.79E-03
56	GO:0010468: regulation of gene expression	2.98E-03
57	GO:0042538: hyperosmotic salinity response	3.12E-03
58	GO:0006665: sphingolipid metabolic process	3.18E-03
59	GO:0032957: inositol trisphosphate metabolic process	3.18E-03
60	GO:0070897: DNA-templated transcriptional preinitiation complex assembly	3.18E-03
61	GO:0009823: cytokinin catabolic process	3.18E-03
62	GO:0006656: phosphatidylcholine biosynthetic process	3.18E-03
63	GO:0009697: salicylic acid biosynthetic process	3.18E-03
64	GO:0006873: cellular ion homeostasis	3.18E-03
65	GO:0048497: maintenance of floral organ identity	3.18E-03
66	GO:0070417: cellular response to cold	3.23E-03
67	GO:0006751: glutathione catabolic process	3.93E-03
68	GO:0015866: ADP transport	3.93E-03
69	GO:0035435: phosphate ion transmembrane transport	3.93E-03
70	GO:0047484: regulation of response to osmotic stress	3.93E-03
71	GO:1900425: negative regulation of defense response to bacterium	3.93E-03
72	GO:0010337: regulation of salicylic acid metabolic process	3.93E-03
73	GO:2000033: regulation of seed dormancy process	4.74E-03
74	GO:0045926: negative regulation of growth	4.74E-03
75	GO:0010016: shoot system morphogenesis	4.74E-03
76	GO:0098655: cation transmembrane transport	4.74E-03
77	GO:0009624: response to nematode	5.36E-03
78	GO:0010103: stomatal complex morphogenesis	5.60E-03
79	GO:0032880: regulation of protein localization	5.60E-03
80	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	5.60E-03
81	GO:0019760: glucosinolate metabolic process	5.63E-03
82	GO:0009828: plant-type cell wall loosening	5.63E-03
83	GO:0010200: response to chitin	6.47E-03
84	GO:0007155: cell adhesion	6.51E-03
85	GO:0035265: organ growth	6.51E-03
86	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	6.51E-03
87	GO:0009690: cytokinin metabolic process	6.51E-03
88	GO:0006355: regulation of transcription, DNA-templated	6.65E-03
89	GO:0009827: plant-type cell wall modification	7.47E-03
90	GO:0006997: nucleus organization	7.47E-03
91	GO:0006526: arginine biosynthetic process	7.47E-03
92	GO:0098656: anion transmembrane transport	8.47E-03
93	GO:0046685: response to arsenic-containing substance	8.47E-03
94	GO:0035556: intracellular signal transduction	8.74E-03
95	GO:0071555: cell wall organization	9.23E-03
96	GO:0048767: root hair elongation	9.24E-03
97	GO:0048268: clathrin coat assembly	9.53E-03
98	GO:0042761: very long-chain fatty acid biosynthetic process	9.53E-03
99	GO:0007346: regulation of mitotic cell cycle	9.53E-03
100	GO:0006811: ion transport	9.70E-03
101	GO:0009631: cold acclimation	1.02E-02
102	GO:0009641: shade avoidance	1.06E-02
103	GO:0006949: syncytium formation	1.06E-02
104	GO:0045490: pectin catabolic process	1.08E-02
105	GO:0009751: response to salicylic acid	1.09E-02
106	GO:0009739: response to gibberellin	1.24E-02
107	GO:0006897: endocytosis	1.33E-02
108	GO:0006631: fatty acid metabolic process	1.33E-02
109	GO:0050826: response to freezing	1.42E-02
110	GO:2000012: regulation of auxin polar transport	1.42E-02
111	GO:0030048: actin filament-based movement	1.42E-02
112	GO:0009640: photomorphogenesis	1.44E-02
113	GO:0009737: response to abscisic acid	1.55E-02
114	GO:0009873: ethylene-activated signaling pathway	1.63E-02
115	GO:0009969: xyloglucan biosynthetic process	1.68E-02
116	GO:0010167: response to nitrate	1.68E-02
117	GO:0010030: positive regulation of seed germination	1.68E-02
118	GO:0009833: plant-type primary cell wall biogenesis	1.81E-02
119	GO:0009664: plant-type cell wall organization	1.81E-02
120	GO:0010025: wax biosynthetic process	1.81E-02
121	GO:0009863: salicylic acid mediated signaling pathway	1.95E-02
122	GO:0010187: negative regulation of seed germination	1.95E-02
123	GO:2000377: regulation of reactive oxygen species metabolic process	1.95E-02
124	GO:0006970: response to osmotic stress	2.06E-02
125	GO:0006825: copper ion transport	2.09E-02
126	GO:0009695: jasmonic acid biosynthetic process	2.09E-02
127	GO:0051321: meiotic cell cycle	2.24E-02
128	GO:0043086: negative regulation of catalytic activity	2.31E-02
129	GO:0080092: regulation of pollen tube growth	2.38E-02
130	GO:0048367: shoot system development	2.38E-02
131	GO:0071215: cellular response to abscisic acid stimulus	2.54E-02
132	GO:0009414: response to water deprivation	2.56E-02
133	GO:0010584: pollen exine formation	2.69E-02
134	GO:0048443: stamen development	2.69E-02
135	GO:0042545: cell wall modification	2.70E-02
136	GO:0009611: response to wounding	2.71E-02
137	GO:0006351: transcription, DNA-templated	2.71E-02
138	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.85E-02
139	GO:0008284: positive regulation of cell proliferation	2.85E-02
140	GO:0018105: peptidyl-serine phosphorylation	2.86E-02
141	GO:0000226: microtubule cytoskeleton organization	3.01E-02
142	GO:0030154: cell differentiation	3.08E-02
143	GO:0048868: pollen tube development	3.18E-02
144	GO:0010268: brassinosteroid homeostasis	3.18E-02
145	GO:0009960: endosperm development	3.18E-02
146	GO:0071472: cellular response to salt stress	3.18E-02
147	GO:0009958: positive gravitropism	3.18E-02
148	GO:0016567: protein ubiquitination	3.22E-02
149	GO:0010183: pollen tube guidance	3.52E-02
150	GO:0008654: phospholipid biosynthetic process	3.52E-02
151	GO:0016132: brassinosteroid biosynthetic process	3.69E-02
152	GO:0080156: mitochondrial mRNA modification	3.69E-02
153	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.69E-02
154	GO:0010193: response to ozone	3.69E-02
155	GO:0000302: response to reactive oxygen species	3.69E-02
156	GO:0006891: intra-Golgi vesicle-mediated transport	3.69E-02
157	GO:0055085: transmembrane transport	3.71E-02
158	GO:0032259: methylation	3.78E-02
159	GO:1901657: glycosyl compound metabolic process	4.05E-02
160	GO:0048364: root development	4.20E-02
161	GO:0016125: sterol metabolic process	4.23E-02
162	GO:0009639: response to red or far red light	4.23E-02
163	GO:0006904: vesicle docking involved in exocytosis	4.42E-02
164	GO:0009911: positive regulation of flower development	4.80E-02
165	GO:0010029: regulation of seed germination	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0035539: 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity	0.00E+00
2	GO:0017048: Rho GTPase binding	0.00E+00
3	GO:0008413: 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity	0.00E+00
4	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
5	GO:0019177: dihydroneopterin triphosphate pyrophosphohydrolase activity	0.00E+00
6	GO:0016629: 12-oxophytodienoate reductase activity	6.00E-06
7	GO:0003883: CTP synthase activity	4.63E-05
8	GO:0004105: choline-phosphate cytidylyltransferase activity	3.65E-04
9	GO:0046870: cadmium ion binding	3.65E-04
10	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	3.65E-04
11	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	3.65E-04
12	GO:0071992: phytochelatin transmembrane transporter activity	3.65E-04
13	GO:0017040: ceramidase activity	7.94E-04
14	GO:0003839: gamma-glutamylcyclotransferase activity	7.94E-04
15	GO:0047216: inositol 3-alpha-galactosyltransferase activity	7.94E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	7.94E-04
17	GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity	7.94E-04
18	GO:0017022: myosin binding	7.94E-04
19	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.64E-04
20	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.64E-04
21	GO:0044212: transcription regulatory region DNA binding	9.79E-04
22	GO:0005457: GDP-fucose transmembrane transporter activity	1.29E-03
23	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.29E-03
24	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.29E-03
25	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	1.29E-03
26	GO:0016758: transferase activity, transferring hexosyl groups	1.33E-03
27	GO:0005096: GTPase activator activity	1.33E-03
28	GO:0008083: growth factor activity	1.37E-03
29	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.85E-03
30	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.85E-03
31	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.85E-03
32	GO:0005460: UDP-glucose transmembrane transporter activity	1.85E-03
33	GO:0004707: MAP kinase activity	2.30E-03
34	GO:0016985: mannan endo-1,4-beta-mannosidase activity	2.49E-03
35	GO:0015098: molybdate ion transmembrane transporter activity	2.49E-03
36	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.49E-03
37	GO:0016757: transferase activity, transferring glycosyl groups	2.87E-03
38	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.18E-03
39	GO:0010294: abscisic acid glucosyltransferase activity	3.18E-03
40	GO:0005459: UDP-galactose transmembrane transporter activity	3.18E-03
41	GO:0019139: cytokinin dehydrogenase activity	3.18E-03
42	GO:0080122: AMP transmembrane transporter activity	3.18E-03
43	GO:0017137: Rab GTPase binding	3.18E-03
44	GO:0004623: phospholipase A2 activity	3.18E-03
45	GO:0043565: sequence-specific DNA binding	3.68E-03
46	GO:0000210: NAD+ diphosphatase activity	3.93E-03
47	GO:0010181: FMN binding	4.05E-03
48	GO:0015217: ADP transmembrane transporter activity	4.74E-03
49	GO:0005347: ATP transmembrane transporter activity	4.74E-03
50	GO:0004143: diacylglycerol kinase activity	5.60E-03
51	GO:0016621: cinnamoyl-CoA reductase activity	5.60E-03
52	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.99E-03
53	GO:0016209: antioxidant activity	6.51E-03
54	GO:0008308: voltage-gated anion channel activity	7.47E-03
55	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.28E-03
56	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	8.35E-03
57	GO:0000989: transcription factor activity, transcription factor binding	8.47E-03
58	GO:0004722: protein serine/threonine phosphatase activity	9.30E-03
59	GO:0046910: pectinesterase inhibitor activity	9.85E-03
60	GO:0005545: 1-phosphatidylinositol binding	1.06E-02
61	GO:0015020: glucuronosyltransferase activity	1.06E-02
62	GO:0005543: phospholipid binding	1.18E-02
63	GO:0008194: UDP-glycosyltransferase activity	1.24E-02
64	GO:0005262: calcium channel activity	1.42E-02
65	GO:0015114: phosphate ion transmembrane transporter activity	1.42E-02
66	GO:0005388: calcium-transporting ATPase activity	1.42E-02
67	GO:0003774: motor activity	1.55E-02
68	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-02
69	GO:0046872: metal ion binding	1.67E-02
70	GO:0008146: sulfotransferase activity	1.68E-02
71	GO:0017025: TBP-class protein binding	1.68E-02
72	GO:0004857: enzyme inhibitor activity	1.95E-02
73	GO:0043130: ubiquitin binding	1.95E-02
74	GO:0016298: lipase activity	2.02E-02
75	GO:0045330: aspartyl esterase activity	2.16E-02
76	GO:0035251: UDP-glucosyltransferase activity	2.24E-02
77	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.38E-02
78	GO:0030570: pectate lyase activity	2.54E-02
79	GO:0030599: pectinesterase activity	2.62E-02
80	GO:0030276: clathrin binding	3.18E-02
81	GO:0001085: RNA polymerase II transcription factor binding	3.18E-02
82	GO:0016759: cellulose synthase activity	4.23E-02
83	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.42E-02
84	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.46E-02
85	GO:0004842: ubiquitin-protein transferase activity	4.55E-02
86	GO:0016413: O-acetyltransferase activity	4.61E-02
87	GO:0005516: calmodulin binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0031357: integral component of chloroplast inner membrane	6.00E-06
2	GO:0070382: exocytic vesicle	3.65E-04
3	GO:0030133: transport vesicle	7.94E-04
4	GO:0005652: nuclear lamina	1.29E-03
5	GO:0045177: apical part of cell	1.85E-03
6	GO:0000139: Golgi membrane	2.02E-03
7	GO:0005622: intracellular	2.29E-03
8	GO:0005905: clathrin-coated pit	2.30E-03
9	GO:0005768: endosome	2.42E-03
10	GO:0030136: clathrin-coated vesicle	3.23E-03
11	GO:0043231: intracellular membrane-bounded organelle	3.46E-03
12	GO:0000793: condensed chromosome	3.93E-03
13	GO:0005794: Golgi apparatus	4.43E-03
14	GO:0000794: condensed nuclear chromosome	5.60E-03
15	GO:0005802: trans-Golgi network	5.84E-03
16	GO:0034399: nuclear periphery	6.51E-03
17	GO:0005618: cell wall	1.05E-02
18	GO:0031012: extracellular matrix	1.42E-02
19	GO:0005938: cell cortex	1.42E-02
20	GO:0046658: anchored component of plasma membrane	1.54E-02
21	GO:0005795: Golgi stack	1.68E-02
22	GO:0016607: nuclear speck	2.38E-02
23	GO:0005654: nucleoplasm	3.38E-02
24	GO:0031965: nuclear membrane	3.52E-02
25	GO:0000145: exocyst	3.87E-02