co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0010021: amylopectin biosynthetic process	1.24E-06
5	GO:0019252: starch biosynthetic process	3.08E-06
6	GO:0005978: glycogen biosynthetic process	8.99E-06
7	GO:0010206: photosystem II repair	1.48E-05
8	GO:0043489: RNA stabilization	3.12E-05
9	GO:0044262: cellular carbohydrate metabolic process	3.12E-05
10	GO:0034337: RNA folding	3.12E-05
11	GO:0000023: maltose metabolic process	3.12E-05
12	GO:0000025: maltose catabolic process	3.12E-05
13	GO:0005980: glycogen catabolic process	3.12E-05
14	GO:0015979: photosynthesis	3.14E-05
15	GO:0005983: starch catabolic process	3.17E-05
16	GO:0005976: polysaccharide metabolic process	7.88E-05
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.88E-05
18	GO:0009409: response to cold	1.04E-04
19	GO:0009735: response to cytokinin	1.24E-04
20	GO:0006000: fructose metabolic process	1.37E-04
21	GO:0046686: response to cadmium ion	1.39E-04
22	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.04E-04
23	GO:0006424: glutamyl-tRNA aminoacylation	2.04E-04
24	GO:2000122: negative regulation of stomatal complex development	2.76E-04
25	GO:0010037: response to carbon dioxide	2.76E-04
26	GO:0015976: carbon utilization	2.76E-04
27	GO:0019464: glycine decarboxylation via glycine cleavage system	2.76E-04
28	GO:0045727: positive regulation of translation	2.76E-04
29	GO:0009817: defense response to fungus, incompatible interaction	3.32E-04
30	GO:0032543: mitochondrial translation	3.53E-04
31	GO:0006461: protein complex assembly	3.53E-04
32	GO:0009435: NAD biosynthetic process	3.53E-04
33	GO:0016120: carotene biosynthetic process	3.53E-04
34	GO:0006544: glycine metabolic process	3.53E-04
35	GO:0006563: L-serine metabolic process	4.34E-04
36	GO:0000470: maturation of LSU-rRNA	4.34E-04
37	GO:1901259: chloroplast rRNA processing	5.20E-04
38	GO:0032544: plastid translation	7.94E-04
39	GO:0006002: fructose 6-phosphate metabolic process	7.94E-04
40	GO:0009657: plastid organization	7.94E-04
41	GO:0005982: starch metabolic process	9.92E-04
42	GO:0035999: tetrahydrofolate interconversion	9.92E-04
43	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.10E-03
44	GO:0009750: response to fructose	1.20E-03
45	GO:0018119: peptidyl-cysteine S-nitrosylation	1.20E-03
46	GO:0016485: protein processing	1.20E-03
47	GO:0009773: photosynthetic electron transport in photosystem I	1.20E-03
48	GO:0006094: gluconeogenesis	1.43E-03
49	GO:0005986: sucrose biosynthetic process	1.43E-03
50	GO:0006807: nitrogen compound metabolic process	1.43E-03
51	GO:0019253: reductive pentose-phosphate cycle	1.55E-03
52	GO:0007623: circadian rhythm	1.69E-03
53	GO:0010025: wax biosynthetic process	1.79E-03
54	GO:0030245: cellulose catabolic process	2.32E-03
55	GO:0035428: hexose transmembrane transport	2.32E-03
56	GO:0006508: proteolysis	2.48E-03
57	GO:0016117: carotenoid biosynthetic process	2.75E-03
58	GO:0042742: defense response to bacterium	2.84E-03
59	GO:0042335: cuticle development	2.90E-03
60	GO:0046323: glucose import	3.05E-03
61	GO:0000302: response to reactive oxygen species	3.51E-03
62	GO:0030163: protein catabolic process	3.84E-03
63	GO:0016311: dephosphorylation	5.23E-03
64	GO:0010119: regulation of stomatal movement	5.99E-03
65	GO:0009631: cold acclimation	5.99E-03
66	GO:0045087: innate immune response	6.38E-03
67	GO:0009853: photorespiration	6.38E-03
68	GO:0034599: cellular response to oxidative stress	6.58E-03
69	GO:0009737: response to abscisic acid	7.39E-03
70	GO:0006855: drug transmembrane transport	8.46E-03
71	GO:0006364: rRNA processing	9.36E-03
72	GO:0006096: glycolytic process	1.05E-02
73	GO:0009626: plant-type hypersensitive response	1.10E-02
74	GO:0009624: response to nematode	1.20E-02
75	GO:0006396: RNA processing	1.22E-02
76	GO:0042744: hydrogen peroxide catabolic process	1.54E-02
77	GO:0009451: RNA modification	1.80E-02
78	GO:0015031: protein transport	2.15E-02
79	GO:0009658: chloroplast organization	2.41E-02
80	GO:0006869: lipid transport	3.41E-02
81	GO:0006281: DNA repair	3.71E-02
82	GO:0006397: mRNA processing	3.82E-02

Rank	GO Term	Adjusted P value
1	GO:0016166: phytoene dehydrogenase activity	0.00E+00
2	GO:0008266: poly(U) RNA binding	1.73E-09
3	GO:0004134: 4-alpha-glucanotransferase activity	3.12E-05
4	GO:0004645: phosphorylase activity	3.12E-05
5	GO:0008184: glycogen phosphorylase activity	3.12E-05
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.12E-05
7	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.12E-05
8	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.88E-05
9	GO:0004618: phosphoglycerate kinase activity	7.88E-05
10	GO:0010297: heteropolysaccharide binding	7.88E-05
11	GO:0033201: alpha-1,4-glucan synthase activity	7.88E-05
12	GO:0004750: ribulose-phosphate 3-epimerase activity	7.88E-05
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.88E-05
14	GO:0008967: phosphoglycolate phosphatase activity	7.88E-05
15	GO:0019843: rRNA binding	9.14E-05
16	GO:0004324: ferredoxin-NADP+ reductase activity	1.37E-04
17	GO:0043169: cation binding	1.37E-04
18	GO:0004373: glycogen (starch) synthase activity	1.37E-04
19	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.76E-04
20	GO:0009011: starch synthase activity	2.76E-04
21	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.76E-04
22	GO:0008236: serine-type peptidase activity	3.16E-04
23	GO:0004372: glycine hydroxymethyltransferase activity	3.53E-04
24	GO:0003959: NADPH dehydrogenase activity	3.53E-04
25	GO:0004222: metalloendopeptidase activity	3.66E-04
26	GO:2001070: starch binding	4.34E-04
27	GO:0004130: cytochrome-c peroxidase activity	4.34E-04
28	GO:0004602: glutathione peroxidase activity	5.20E-04
29	GO:0003729: mRNA binding	8.37E-04
30	GO:0015386: potassium:proton antiporter activity	1.20E-03
31	GO:0030170: pyridoxal phosphate binding	1.37E-03
32	GO:0004252: serine-type endopeptidase activity	1.37E-03
33	GO:0004089: carbonate dehydratase activity	1.43E-03
34	GO:0015079: potassium ion transmembrane transporter activity	2.05E-03
35	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.14E-03
36	GO:0008810: cellulase activity	2.46E-03
37	GO:0003723: RNA binding	2.57E-03
38	GO:0008233: peptidase activity	3.15E-03
39	GO:0005355: glucose transmembrane transporter activity	3.20E-03
40	GO:0050662: coenzyme binding	3.20E-03
41	GO:0008237: metallopeptidase activity	4.17E-03
42	GO:0003746: translation elongation factor activity	6.38E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.10E-02
44	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.43E-02
45	GO:0015144: carbohydrate transmembrane transporter activity	1.60E-02
46	GO:0005351: sugar:proton symporter activity	1.74E-02
47	GO:0004601: peroxidase activity	2.41E-02
48	GO:0004519: endonuclease activity	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	1.93E-22
3	GO:0009570: chloroplast stroma	1.17E-21
4	GO:0009941: chloroplast envelope	8.60E-20
5	GO:0009534: chloroplast thylakoid	2.53E-16
6	GO:0009579: thylakoid	1.29E-14
7	GO:0009535: chloroplast thylakoid membrane	6.40E-13
8	GO:0010319: stromule	6.05E-08
9	GO:0009533: chloroplast stromal thylakoid	6.71E-06
10	GO:0009501: amyloplast	8.99E-06
11	GO:0048046: apoplast	1.45E-05
12	GO:0031977: thylakoid lumen	2.06E-05
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.12E-05
14	GO:0009508: plastid chromosome	3.71E-05
15	GO:0030093: chloroplast photosystem I	7.88E-05
16	GO:0009543: chloroplast thylakoid lumen	9.14E-05
17	GO:0009509: chromoplast	1.37E-04
18	GO:0009295: nucleoid	2.25E-04
19	GO:0031969: chloroplast membrane	3.52E-04
20	GO:0042644: chloroplast nucleoid	8.92E-04
21	GO:0032040: small-subunit processome	1.31E-03
22	GO:0005759: mitochondrial matrix	1.54E-03
23	GO:0030095: chloroplast photosystem II	1.55E-03
24	GO:0005840: ribosome	3.01E-03
25	GO:0016020: membrane	3.32E-03
26	GO:0009523: photosystem II	3.36E-03
27	GO:0005829: cytosol	4.19E-03
28	GO:0030529: intracellular ribonucleoprotein complex	4.52E-03
29	GO:0009706: chloroplast inner membrane	1.20E-02
30	GO:0010287: plastoglobule	1.35E-02
31	GO:0022625: cytosolic large ribosomal subunit	2.91E-02