co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006005: L-fucose biosynthetic process	0.00E+00
2	GO:0045730: respiratory burst	0.00E+00
3	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
4	GO:0010372: positive regulation of gibberellin biosynthetic process	4.16E-07
5	GO:0009699: phenylpropanoid biosynthetic process	5.65E-07
6	GO:0006402: mRNA catabolic process	4.65E-05
7	GO:0051014: actin filament severing	8.78E-05
8	GO:0046244: salicylic acid catabolic process	8.78E-05
9	GO:0018920: glyphosate metabolic process	8.78E-05
10	GO:0080157: regulation of plant-type cell wall organization or biogenesis	8.78E-05
11	GO:0099636: cytoplasmic streaming	8.78E-05
12	GO:0042350: GDP-L-fucose biosynthetic process	8.78E-05
13	GO:0080173: male-female gamete recognition during double fertilization	8.78E-05
14	GO:0009073: aromatic amino acid family biosynthetic process	1.25E-04
15	GO:0034605: cellular response to heat	1.91E-04
16	GO:0010155: regulation of proton transport	2.08E-04
17	GO:0009805: coumarin biosynthetic process	2.08E-04
18	GO:0019521: D-gluconate metabolic process	2.08E-04
19	GO:0009225: nucleotide-sugar metabolic process	2.16E-04
20	GO:0010165: response to X-ray	3.48E-04
21	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	3.48E-04
22	GO:0006065: UDP-glucuronate biosynthetic process	3.48E-04
23	GO:0010447: response to acidic pH	3.48E-04
24	GO:0052546: cell wall pectin metabolic process	3.48E-04
25	GO:0070475: rRNA base methylation	3.48E-04
26	GO:0009306: protein secretion	4.27E-04
27	GO:0051131: chaperone-mediated protein complex assembly	5.01E-04
28	GO:0009800: cinnamic acid biosynthetic process	5.01E-04
29	GO:0009845: seed germination	6.27E-04
30	GO:2000122: negative regulation of stomatal complex development	6.66E-04
31	GO:1902347: response to strigolactone	6.66E-04
32	GO:0045227: capsule polysaccharide biosynthetic process	6.66E-04
33	GO:0033320: UDP-D-xylose biosynthetic process	6.66E-04
34	GO:0051764: actin crosslink formation	6.66E-04
35	GO:0033358: UDP-L-arabinose biosynthetic process	6.66E-04
36	GO:0031047: gene silencing by RNA	7.02E-04
37	GO:0010286: heat acclimation	8.40E-04
38	GO:0033365: protein localization to organelle	1.03E-03
39	GO:0000470: maturation of LSU-rRNA	1.03E-03
40	GO:0042732: D-xylose metabolic process	1.03E-03
41	GO:0006559: L-phenylalanine catabolic process	1.03E-03
42	GO:0009423: chorismate biosynthetic process	1.23E-03
43	GO:0010044: response to aluminum ion	1.44E-03
44	GO:0098869: cellular oxidant detoxification	1.44E-03
45	GO:0006744: ubiquinone biosynthetic process	1.44E-03
46	GO:1900056: negative regulation of leaf senescence	1.44E-03
47	GO:0051693: actin filament capping	1.44E-03
48	GO:0080186: developmental vegetative growth	1.44E-03
49	GO:0005975: carbohydrate metabolic process	1.62E-03
50	GO:0050821: protein stabilization	1.66E-03
51	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.66E-03
52	GO:0009819: drought recovery	1.66E-03
53	GO:0010052: guard cell differentiation	1.89E-03
54	GO:0017004: cytochrome complex assembly	1.89E-03
55	GO:0009808: lignin metabolic process	1.89E-03
56	GO:0015996: chlorophyll catabolic process	1.89E-03
57	GO:0080167: response to karrikin	1.90E-03
58	GO:0007062: sister chromatid cohesion	2.14E-03
59	GO:0006098: pentose-phosphate shunt	2.14E-03
60	GO:0090332: stomatal closure	2.39E-03
61	GO:0030042: actin filament depolymerization	2.39E-03
62	GO:0006032: chitin catabolic process	2.65E-03
63	GO:0010215: cellulose microfibril organization	2.65E-03
64	GO:0019538: protein metabolic process	2.65E-03
65	GO:0010224: response to UV-B	2.70E-03
66	GO:0010015: root morphogenesis	2.93E-03
67	GO:0009698: phenylpropanoid metabolic process	2.93E-03
68	GO:0006468: protein phosphorylation	3.04E-03
69	GO:0000266: mitochondrial fission	3.21E-03
70	GO:2000028: regulation of photoperiodism, flowering	3.50E-03
71	GO:0046274: lignin catabolic process	3.50E-03
72	GO:0055046: microgametogenesis	3.50E-03
73	GO:0007015: actin filament organization	3.80E-03
74	GO:0006446: regulation of translational initiation	3.80E-03
75	GO:0006302: double-strand break repair	3.80E-03
76	GO:0090351: seedling development	4.10E-03
77	GO:0007010: cytoskeleton organization	4.74E-03
78	GO:0010187: negative regulation of seed germination	4.74E-03
79	GO:0080147: root hair cell development	4.74E-03
80	GO:0051017: actin filament bundle assembly	4.74E-03
81	GO:0016998: cell wall macromolecule catabolic process	5.42E-03
82	GO:0048511: rhythmic process	5.42E-03
83	GO:0061077: chaperone-mediated protein folding	5.42E-03
84	GO:0006413: translational initiation	5.92E-03
85	GO:0009411: response to UV	6.12E-03
86	GO:0006012: galactose metabolic process	6.12E-03
87	GO:0071215: cellular response to abscisic acid stimulus	6.12E-03
88	GO:0009686: gibberellin biosynthetic process	6.12E-03
89	GO:0009561: megagametogenesis	6.48E-03
90	GO:0009651: response to salt stress	6.50E-03
91	GO:0009611: response to wounding	6.62E-03
92	GO:0042631: cellular response to water deprivation	7.24E-03
93	GO:0007166: cell surface receptor signaling pathway	7.26E-03
94	GO:0007059: chromosome segregation	8.02E-03
95	GO:0002229: defense response to oomycetes	8.83E-03
96	GO:1901657: glycosyl compound metabolic process	9.67E-03
97	GO:0016579: protein deubiquitination	1.10E-02
98	GO:0009816: defense response to bacterium, incompatible interaction	1.19E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.19E-02
100	GO:0048573: photoperiodism, flowering	1.28E-02
101	GO:0016049: cell growth	1.33E-02
102	GO:0048767: root hair elongation	1.43E-02
103	GO:0009813: flavonoid biosynthetic process	1.43E-02
104	GO:0000724: double-strand break repair via homologous recombination	1.58E-02
105	GO:0006839: mitochondrial transport	1.79E-02
106	GO:0050832: defense response to fungus	1.86E-02
107	GO:0006397: mRNA processing	1.89E-02
108	GO:0009753: response to jasmonic acid	1.94E-02
109	GO:0008283: cell proliferation	1.95E-02
110	GO:0008152: metabolic process	1.99E-02
111	GO:0009965: leaf morphogenesis	2.12E-02
112	GO:0009664: plant-type cell wall organization	2.29E-02
113	GO:0009873: ethylene-activated signaling pathway	2.33E-02
114	GO:0055114: oxidation-reduction process	2.39E-02
115	GO:0009809: lignin biosynthetic process	2.41E-02
116	GO:0006810: transport	2.56E-02
117	GO:0006417: regulation of translation	2.60E-02
118	GO:0046686: response to cadmium ion	2.75E-02
119	GO:0009620: response to fungus	2.91E-02
120	GO:0006396: RNA processing	3.17E-02
121	GO:0042744: hydrogen peroxide catabolic process	3.99E-02
122	GO:0016036: cellular response to phosphate starvation	4.35E-02
123	GO:0007623: circadian rhythm	4.58E-02
124	GO:0016310: phosphorylation	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
2	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
3	GO:0016207: 4-coumarate-CoA ligase activity	7.31E-05
4	GO:0031219: levanase activity	8.78E-05
5	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	8.78E-05
6	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	8.78E-05
7	GO:0050577: GDP-L-fucose synthase activity	8.78E-05
8	GO:0051669: fructan beta-fructosidase activity	8.78E-05
9	GO:0005524: ATP binding	1.99E-04
10	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.08E-04
11	GO:0003979: UDP-glucose 6-dehydrogenase activity	3.48E-04
12	GO:0045548: phenylalanine ammonia-lyase activity	3.48E-04
13	GO:0050373: UDP-arabinose 4-epimerase activity	6.66E-04
14	GO:0004518: nuclease activity	7.02E-04
15	GO:0016301: kinase activity	7.77E-04
16	GO:0047631: ADP-ribose diphosphatase activity	8.44E-04
17	GO:0048040: UDP-glucuronate decarboxylase activity	1.03E-03
18	GO:0003978: UDP-glucose 4-epimerase activity	1.23E-03
19	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.23E-03
20	GO:0004656: procollagen-proline 4-dioxygenase activity	1.23E-03
21	GO:0070403: NAD+ binding	1.23E-03
22	GO:0004012: phospholipid-translocating ATPase activity	1.23E-03
23	GO:0003729: mRNA binding	1.56E-03
24	GO:0004525: ribonuclease III activity	1.66E-03
25	GO:0004564: beta-fructofuranosidase activity	1.66E-03
26	GO:0004575: sucrose alpha-glucosidase activity	2.39E-03
27	GO:0004568: chitinase activity	2.65E-03
28	GO:0016874: ligase activity	3.48E-03
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.50E-03
30	GO:0004674: protein serine/threonine kinase activity	3.86E-03
31	GO:0031418: L-ascorbic acid binding	4.74E-03
32	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	5.42E-03
33	GO:0018024: histone-lysine N-methyltransferase activity	6.86E-03
34	GO:0003743: translation initiation factor activity	7.42E-03
35	GO:0001085: RNA polymerase II transcription factor binding	7.62E-03
36	GO:0050662: coenzyme binding	8.02E-03
37	GO:0016853: isomerase activity	8.02E-03
38	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.83E-03
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.16E-03
40	GO:0051015: actin filament binding	9.67E-03
41	GO:0030247: polysaccharide binding	1.28E-02
42	GO:0102483: scopolin beta-glucosidase activity	1.28E-02
43	GO:0004222: metalloendopeptidase activity	1.48E-02
44	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.53E-02
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.53E-02
46	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.63E-02
47	GO:0008422: beta-glucosidase activity	1.74E-02
48	GO:0005215: transporter activity	1.79E-02
49	GO:0051287: NAD binding	2.24E-02
50	GO:0016887: ATPase activity	2.80E-02
51	GO:0003779: actin binding	3.04E-02
52	GO:0051082: unfolded protein binding	3.10E-02
53	GO:0008026: ATP-dependent helicase activity	3.23E-02
54	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.99E-02
55	GO:0030246: carbohydrate binding	4.30E-02
56	GO:0015297: antiporter activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0010494: cytoplasmic stress granule	7.31E-05
4	GO:0048471: perinuclear region of cytoplasm	1.25E-04
5	GO:0005886: plasma membrane	3.60E-04
6	GO:0005618: cell wall	7.09E-04
7	GO:0032580: Golgi cisterna membrane	7.93E-04
8	GO:0030915: Smc5-Smc6 complex	8.44E-04
9	GO:0005746: mitochondrial respiratory chain	8.44E-04
10	GO:0000932: P-body	9.37E-04
11	GO:0010369: chromocenter	1.23E-03
12	GO:0005635: nuclear envelope	2.79E-03
13	GO:0005884: actin filament	2.93E-03
14	GO:0090404: pollen tube tip	2.93E-03
15	GO:0031012: extracellular matrix	3.50E-03
16	GO:0005741: mitochondrial outer membrane	5.42E-03
17	GO:0005770: late endosome	7.62E-03
18	GO:0005694: chromosome	9.24E-03
19	GO:0005737: cytoplasm	9.25E-03
20	GO:0005802: trans-Golgi network	1.17E-02
21	GO:0005788: endoplasmic reticulum lumen	1.19E-02
22	GO:0005667: transcription factor complex	1.24E-02
23	GO:0005768: endosome	1.38E-02
24	GO:0005743: mitochondrial inner membrane	1.68E-02
25	GO:0016021: integral component of membrane	1.69E-02
26	GO:0031902: late endosome membrane	1.84E-02
27	GO:0090406: pollen tube	1.95E-02
28	GO:0009505: plant-type cell wall	2.10E-02
29	GO:0005856: cytoskeleton	2.12E-02
30	GO:0005783: endoplasmic reticulum	2.29E-02
31	GO:0031966: mitochondrial membrane	2.29E-02
32	GO:0005789: endoplasmic reticulum membrane	2.69E-02
33	GO:0010008: endosome membrane	2.78E-02
34	GO:0005834: heterotrimeric G-protein complex	2.84E-02
35	GO:0005730: nucleolus	3.05E-02
36	GO:0005777: peroxisome	3.68E-02
37	GO:0005623: cell	3.71E-02
38	GO:0005794: Golgi apparatus	4.52E-02
39	GO:0005829: cytosol	4.75E-02
40	GO:0031225: anchored component of membrane	4.97E-02