co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0010025: wax biosynthetic process	6.54E-06
4	GO:0000023: maltose metabolic process	9.14E-05
5	GO:0000025: maltose catabolic process	9.14E-05
6	GO:0042761: very long-chain fatty acid biosynthetic process	9.45E-05
7	GO:0005976: polysaccharide metabolic process	2.16E-04
8	GO:0010623: programmed cell death involved in cell development	3.61E-04
9	GO:0015979: photosynthesis	3.79E-04
10	GO:0010017: red or far-red light signaling pathway	3.80E-04
11	GO:0010021: amylopectin biosynthetic process	6.90E-04
12	GO:0010037: response to carbon dioxide	6.90E-04
13	GO:0015976: carbon utilization	6.90E-04
14	GO:0010023: proanthocyanidin biosynthetic process	6.90E-04
15	GO:0009765: photosynthesis, light harvesting	6.90E-04
16	GO:0045727: positive regulation of translation	6.90E-04
17	GO:0022622: root system development	6.90E-04
18	GO:0010600: regulation of auxin biosynthetic process	6.90E-04
19	GO:0010508: positive regulation of autophagy	6.90E-04
20	GO:0071585: detoxification of cadmium ion	6.90E-04
21	GO:2000122: negative regulation of stomatal complex development	6.90E-04
22	GO:0006461: protein complex assembly	8.73E-04
23	GO:0009823: cytokinin catabolic process	8.73E-04
24	GO:0006656: phosphatidylcholine biosynthetic process	8.73E-04
25	GO:0000470: maturation of LSU-rRNA	1.07E-03
26	GO:0009913: epidermal cell differentiation	1.07E-03
27	GO:0009735: response to cytokinin	1.17E-03
28	GO:0009955: adaxial/abaxial pattern specification	1.27E-03
29	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.27E-03
30	GO:0045926: negative regulation of growth	1.27E-03
31	GO:0009631: cold acclimation	1.46E-03
32	GO:0010103: stomatal complex morphogenesis	1.49E-03
33	GO:0032880: regulation of protein localization	1.49E-03
34	GO:0010161: red light signaling pathway	1.49E-03
35	GO:0050829: defense response to Gram-negative bacterium	1.49E-03
36	GO:0009645: response to low light intensity stimulus	1.49E-03
37	GO:0009704: de-etiolation	1.72E-03
38	GO:0010928: regulation of auxin mediated signaling pathway	1.72E-03
39	GO:0009819: drought recovery	1.72E-03
40	GO:0030091: protein repair	1.72E-03
41	GO:0009690: cytokinin metabolic process	1.72E-03
42	GO:0032544: plastid translation	1.96E-03
43	GO:0009657: plastid organization	1.96E-03
44	GO:0010114: response to red light	2.05E-03
45	GO:0009644: response to high light intensity	2.21E-03
46	GO:0006949: syncytium formation	2.75E-03
47	GO:0009773: photosynthetic electron transport in photosystem I	3.03E-03
48	GO:0043086: negative regulation of catalytic activity	3.24E-03
49	GO:0005983: starch catabolic process	3.32E-03
50	GO:0016024: CDP-diacylglycerol biosynthetic process	3.32E-03
51	GO:0009718: anthocyanin-containing compound biosynthetic process	3.63E-03
52	GO:0006094: gluconeogenesis	3.63E-03
53	GO:2000012: regulation of auxin polar transport	3.63E-03
54	GO:0010102: lateral root morphogenesis	3.63E-03
55	GO:0009266: response to temperature stimulus	3.93E-03
56	GO:0010143: cutin biosynthetic process	3.93E-03
57	GO:0006289: nucleotide-excision repair	4.92E-03
58	GO:0009058: biosynthetic process	5.12E-03
59	GO:0007017: microtubule-based process	5.27E-03
60	GO:0009768: photosynthesis, light harvesting in photosystem I	5.27E-03
61	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	6.35E-03
62	GO:0010089: xylem development	6.73E-03
63	GO:0006284: base-excision repair	6.73E-03
64	GO:0070417: cellular response to cold	7.11E-03
65	GO:0008284: positive regulation of cell proliferation	7.11E-03
66	GO:0009739: response to gibberellin	7.49E-03
67	GO:0042631: cellular response to water deprivation	7.51E-03
68	GO:0000226: microtubule cytoskeleton organization	7.51E-03
69	GO:0009958: positive gravitropism	7.91E-03
70	GO:0019252: starch biosynthetic process	8.74E-03
71	GO:0048825: cotyledon development	8.74E-03
72	GO:0000302: response to reactive oxygen species	9.16E-03
73	GO:0010583: response to cyclopentenone	9.60E-03
74	GO:0009828: plant-type cell wall loosening	1.05E-02
75	GO:0019760: glucosinolate metabolic process	1.05E-02
76	GO:0009737: response to abscisic acid	1.22E-02
77	GO:0006974: cellular response to DNA damage stimulus	1.28E-02
78	GO:0018298: protein-chromophore linkage	1.43E-02
79	GO:0009817: defense response to fungus, incompatible interaction	1.43E-02
80	GO:0000160: phosphorelay signal transduction system	1.48E-02
81	GO:0010218: response to far red light	1.54E-02
82	GO:0048527: lateral root development	1.59E-02
83	GO:0010119: regulation of stomatal movement	1.59E-02
84	GO:0009637: response to blue light	1.69E-02
85	GO:0006979: response to oxidative stress	1.71E-02
86	GO:0034599: cellular response to oxidative stress	1.75E-02
87	GO:0006631: fatty acid metabolic process	1.91E-02
88	GO:0009640: photomorphogenesis	2.03E-02
89	GO:0008283: cell proliferation	2.03E-02
90	GO:0000209: protein polyubiquitination	2.09E-02
91	GO:0008152: metabolic process	2.10E-02
92	GO:0015031: protein transport	2.28E-02
93	GO:0009664: plant-type cell wall organization	2.38E-02
94	GO:0009409: response to cold	2.47E-02
95	GO:0006364: rRNA processing	2.51E-02
96	GO:0009585: red, far-red light phototransduction	2.51E-02
97	GO:0055114: oxidation-reduction process	2.70E-02
98	GO:0006096: glycolytic process	2.82E-02
99	GO:0042545: cell wall modification	3.16E-02
100	GO:0009742: brassinosteroid mediated signaling pathway	3.36E-02
101	GO:0009845: seed germination	4.00E-02
102	GO:0042744: hydrogen peroxide catabolic process	4.15E-02
103	GO:0006633: fatty acid biosynthetic process	4.45E-02
104	GO:0045490: pectin catabolic process	4.75E-02
105	GO:0007623: circadian rhythm	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	9.14E-05
4	GO:0004105: choline-phosphate cytidylyltransferase activity	9.14E-05
5	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	9.14E-05
6	GO:0004134: 4-alpha-glucanotransferase activity	9.14E-05
7	GO:0010297: heteropolysaccharide binding	2.16E-04
8	GO:0033201: alpha-1,4-glucan synthase activity	2.16E-04
9	GO:0018708: thiol S-methyltransferase activity	2.16E-04
10	GO:0004373: glycogen (starch) synthase activity	3.61E-04
11	GO:0019104: DNA N-glycosylase activity	6.90E-04
12	GO:0009011: starch synthase activity	6.90E-04
13	GO:0046910: pectinesterase inhibitor activity	8.31E-04
14	GO:0019139: cytokinin dehydrogenase activity	8.73E-04
15	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	8.73E-04
16	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.07E-03
17	GO:2001070: starch binding	1.07E-03
18	GO:0004332: fructose-bisphosphate aldolase activity	1.07E-03
19	GO:0004130: cytochrome-c peroxidase activity	1.07E-03
20	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.07E-03
21	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.27E-03
22	GO:0004602: glutathione peroxidase activity	1.27E-03
23	GO:0016209: antioxidant activity	1.72E-03
24	GO:0047372: acylglycerol lipase activity	3.03E-03
25	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.34E-03
26	GO:0004089: carbonate dehydratase activity	3.63E-03
27	GO:0004022: alcohol dehydrogenase (NAD) activity	3.63E-03
28	GO:0008266: poly(U) RNA binding	3.93E-03
29	GO:0008083: growth factor activity	3.93E-03
30	GO:0031409: pigment binding	4.58E-03
31	GO:0019843: rRNA binding	4.86E-03
32	GO:0003713: transcription coactivator activity	7.91E-03
33	GO:0050662: coenzyme binding	8.32E-03
34	GO:0048038: quinone binding	9.16E-03
35	GO:0000156: phosphorelay response regulator activity	1.00E-02
36	GO:0003684: damaged DNA binding	1.05E-02
37	GO:0016791: phosphatase activity	1.05E-02
38	GO:0005200: structural constituent of cytoskeleton	1.09E-02
39	GO:0016168: chlorophyll binding	1.23E-02
40	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.59E-02
41	GO:0003993: acid phosphatase activity	1.75E-02
42	GO:0003824: catalytic activity	1.90E-02
43	GO:0003924: GTPase activity	1.91E-02
44	GO:0031625: ubiquitin protein ligase binding	2.70E-02
45	GO:0045330: aspartyl esterase activity	2.70E-02
46	GO:0016874: ligase activity	3.09E-02
47	GO:0030599: pectinesterase activity	3.09E-02
48	GO:0016746: transferase activity, transferring acyl groups	3.29E-02
49	GO:0016740: transferase activity	4.12E-02
50	GO:0043565: sequence-specific DNA binding	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	2.17E-08
2	GO:0009535: chloroplast thylakoid membrane	4.64E-08
3	GO:0009579: thylakoid	3.16E-07
4	GO:0009534: chloroplast thylakoid	3.28E-07
5	GO:0010287: plastoglobule	2.46E-06
6	GO:0009570: chloroplast stroma	8.16E-06
7	GO:0009507: chloroplast	5.18E-05
8	GO:0030093: chloroplast photosystem I	2.16E-04
9	GO:0031357: integral component of chloroplast inner membrane	2.16E-04
10	GO:0009523: photosystem II	6.49E-04
11	GO:0009533: chloroplast stromal thylakoid	1.49E-03
12	GO:0009501: amyloplast	1.72E-03
13	GO:0009538: photosystem I reaction center	1.72E-03
14	GO:0031977: thylakoid lumen	1.89E-03
15	GO:0045298: tubulin complex	2.21E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-03
17	GO:0009508: plastid chromosome	3.63E-03
18	GO:0030095: chloroplast photosystem II	3.93E-03
19	GO:0030076: light-harvesting complex	4.26E-03
20	GO:0009543: chloroplast thylakoid lumen	4.86E-03
21	GO:0005615: extracellular space	7.49E-03
22	GO:0009522: photosystem I	8.32E-03
23	GO:0071944: cell periphery	1.00E-02
24	GO:0010319: stromule	1.09E-02
25	GO:0009295: nucleoid	1.09E-02
26	GO:0009706: chloroplast inner membrane	3.22E-02