co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G30170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
8	GO:0010196: nonphotochemical quenching	1.09E-07
9	GO:0090391: granum assembly	8.71E-07
10	GO:0010027: thylakoid membrane organization	2.92E-05
11	GO:0043609: regulation of carbon utilization	6.26E-05
12	GO:0043007: maintenance of rDNA	6.26E-05
13	GO:0009773: photosynthetic electron transport in photosystem I	7.62E-05
14	GO:0006790: sulfur compound metabolic process	8.91E-05
15	GO:0010207: photosystem II assembly	1.18E-04
16	GO:0046854: phosphatidylinositol phosphorylation	1.34E-04
17	GO:0030187: melatonin biosynthetic process	1.52E-04
18	GO:0000256: allantoin catabolic process	1.52E-04
19	GO:0097054: L-glutamate biosynthetic process	1.52E-04
20	GO:0006568: tryptophan metabolic process	1.52E-04
21	GO:0015979: photosynthesis	1.65E-04
22	GO:0071492: cellular response to UV-A	2.57E-04
23	GO:0006000: fructose metabolic process	2.57E-04
24	GO:0009405: pathogenesis	2.57E-04
25	GO:0010136: ureide catabolic process	2.57E-04
26	GO:0016117: carotenoid biosynthetic process	2.97E-04
27	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.73E-04
28	GO:0006020: inositol metabolic process	3.73E-04
29	GO:0006145: purine nucleobase catabolic process	3.73E-04
30	GO:0006537: glutamate biosynthetic process	3.73E-04
31	GO:0046739: transport of virus in multicellular host	3.73E-04
32	GO:0006021: inositol biosynthetic process	4.99E-04
33	GO:0010109: regulation of photosynthesis	4.99E-04
34	GO:0019676: ammonia assimilation cycle	4.99E-04
35	GO:0071486: cellular response to high light intensity	4.99E-04
36	GO:0015994: chlorophyll metabolic process	4.99E-04
37	GO:0006546: glycine catabolic process	4.99E-04
38	GO:0016123: xanthophyll biosynthetic process	6.32E-04
39	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.73E-04
40	GO:0046855: inositol phosphate dephosphorylation	7.73E-04
41	GO:0009853: photorespiration	9.88E-04
42	GO:0009645: response to low light intensity stimulus	1.07E-03
43	GO:0006605: protein targeting	1.24E-03
44	GO:0009642: response to light intensity	1.24E-03
45	GO:0009644: response to high light intensity	1.36E-03
46	GO:0032544: plastid translation	1.41E-03
47	GO:0006002: fructose 6-phosphate metabolic process	1.41E-03
48	GO:0009657: plastid organization	1.41E-03
49	GO:0010206: photosystem II repair	1.58E-03
50	GO:0006415: translational termination	2.17E-03
51	GO:0043085: positive regulation of catalytic activity	2.17E-03
52	GO:0006006: glucose metabolic process	2.58E-03
53	GO:0009767: photosynthetic electron transport chain	2.58E-03
54	GO:0019253: reductive pentose-phosphate cycle	2.80E-03
55	GO:0009768: photosynthesis, light harvesting in photosystem I	3.74E-03
56	GO:0006825: copper ion transport	3.74E-03
57	GO:0008299: isoprenoid biosynthetic process	3.74E-03
58	GO:0006413: translational initiation	3.79E-03
59	GO:0006012: galactose metabolic process	4.50E-03
60	GO:0009561: megagametogenesis	4.76E-03
61	GO:0006662: glycerol ether metabolic process	5.59E-03
62	GO:0009646: response to absence of light	5.88E-03
63	GO:0019252: starch biosynthetic process	6.17E-03
64	GO:0009658: chloroplast organization	6.27E-03
65	GO:0009793: embryo development ending in seed dormancy	6.41E-03
66	GO:0016032: viral process	6.76E-03
67	GO:0010090: trichome morphogenesis	7.07E-03
68	GO:0055114: oxidation-reduction process	8.27E-03
69	GO:0045454: cell redox homeostasis	9.31E-03
70	GO:0015995: chlorophyll biosynthetic process	9.36E-03
71	GO:0018298: protein-chromophore linkage	1.01E-02
72	GO:0006499: N-terminal protein myristoylation	1.08E-02
73	GO:0007568: aging	1.11E-02
74	GO:0034599: cellular response to oxidative stress	1.23E-02
75	GO:0008152: metabolic process	1.27E-02
76	GO:0009744: response to sucrose	1.42E-02
77	GO:0006855: drug transmembrane transport	1.58E-02
78	GO:0006096: glycolytic process	1.98E-02
79	GO:0006396: RNA processing	2.30E-02

Rank	GO Term	Adjusted P value
1	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
11	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
12	GO:0031072: heat shock protein binding	1.45E-06
13	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.50E-05
14	GO:0016041: glutamate synthase (ferredoxin) activity	6.26E-05
15	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	6.26E-05
16	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.26E-05
17	GO:0004008: copper-exporting ATPase activity	6.26E-05
18	GO:0019200: carbohydrate kinase activity	1.52E-04
19	GO:0010291: carotene beta-ring hydroxylase activity	1.52E-04
20	GO:0047746: chlorophyllase activity	1.52E-04
21	GO:0004047: aminomethyltransferase activity	1.52E-04
22	GO:0052832: inositol monophosphate 3-phosphatase activity	1.52E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	1.52E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	1.52E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.52E-04
26	GO:0051082: unfolded protein binding	2.36E-04
27	GO:0030267: glyoxylate reductase (NADP) activity	2.57E-04
28	GO:0070402: NADPH binding	2.57E-04
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.57E-04
30	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.57E-04
31	GO:0016853: isomerase activity	3.73E-04
32	GO:0004792: thiosulfate sulfurtransferase activity	3.73E-04
33	GO:0016149: translation release factor activity, codon specific	3.73E-04
34	GO:0008453: alanine-glyoxylate transaminase activity	4.99E-04
35	GO:0009011: starch synthase activity	4.99E-04
36	GO:0051538: 3 iron, 4 sulfur cluster binding	6.32E-04
37	GO:0016168: chlorophyll binding	6.45E-04
38	GO:2001070: starch binding	7.73E-04
39	GO:0004017: adenylate kinase activity	9.20E-04
40	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	9.20E-04
41	GO:0004034: aldose 1-epimerase activity	1.24E-03
42	GO:0005375: copper ion transmembrane transporter activity	1.41E-03
43	GO:0051287: NAD binding	1.51E-03
44	GO:0003747: translation release factor activity	1.58E-03
45	GO:0046872: metal ion binding	1.80E-03
46	GO:0008047: enzyme activator activity	1.96E-03
47	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.58E-03
48	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.04E-03
49	GO:0031409: pigment binding	3.26E-03
50	GO:0005528: FK506 binding	3.49E-03
51	GO:0022891: substrate-specific transmembrane transporter activity	4.50E-03
52	GO:0003756: protein disulfide isomerase activity	4.76E-03
53	GO:0047134: protein-disulfide reductase activity	5.03E-03
54	GO:0008080: N-acetyltransferase activity	5.59E-03
55	GO:0016787: hydrolase activity	5.71E-03
56	GO:0004791: thioredoxin-disulfide reductase activity	5.88E-03
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.07E-03
58	GO:0008483: transaminase activity	7.70E-03
59	GO:0008236: serine-type peptidase activity	9.70E-03
60	GO:0015238: drug transmembrane transporter activity	1.04E-02
61	GO:0030145: manganese ion binding	1.11E-02
62	GO:0050661: NADP binding	1.30E-02
63	GO:0043621: protein self-association	1.50E-02
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.58E-02
65	GO:0015035: protein disulfide oxidoreductase activity	2.30E-02
66	GO:0019825: oxygen binding	2.91E-02
67	GO:0015297: antiporter activity	3.22E-02
68	GO:0003743: translation initiation factor activity	3.72E-02
69	GO:0042802: identical protein binding	3.95E-02
70	GO:0005506: iron ion binding	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.46E-29
3	GO:0009535: chloroplast thylakoid membrane	1.26E-18
4	GO:0009534: chloroplast thylakoid	6.19E-17
5	GO:0009570: chloroplast stroma	6.13E-16
6	GO:0009941: chloroplast envelope	1.15E-08
7	GO:0009579: thylakoid	4.15E-08
8	GO:0009543: chloroplast thylakoid lumen	7.50E-07
9	GO:0009782: photosystem I antenna complex	6.26E-05
10	GO:0031977: thylakoid lumen	8.32E-05
11	GO:0031969: chloroplast membrane	1.31E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.58E-03
13	GO:0030076: light-harvesting complex	3.03E-03
14	GO:0009654: photosystem II oxygen evolving complex	3.74E-03
15	GO:0042651: thylakoid membrane	3.74E-03
16	GO:0009523: photosystem II	6.17E-03
17	GO:0019898: extrinsic component of membrane	6.17E-03
18	GO:0048046: apoplast	1.27E-02
19	GO:0005829: cytosol	1.58E-02
20	GO:0010287: plastoglobule	2.55E-02
21	GO:0005623: cell	2.70E-02
22	GO:0016020: membrane	2.91E-02
23	GO:0005759: mitochondrial matrix	3.11E-02