co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0016118: carotenoid catabolic process	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0015717: triose phosphate transport	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:2000505: regulation of energy homeostasis	0.00E+00
10	GO:0015979: photosynthesis	3.47E-31
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.25E-23
12	GO:0018298: protein-chromophore linkage	5.09E-21
13	GO:0009645: response to low light intensity stimulus	1.40E-13
14	GO:0009644: response to high light intensity	4.10E-12
15	GO:0010196: nonphotochemical quenching	5.04E-11
16	GO:0009769: photosynthesis, light harvesting in photosystem II	5.04E-11
17	GO:0009773: photosynthetic electron transport in photosystem I	1.82E-09
18	GO:0042549: photosystem II stabilization	2.75E-09
19	GO:0010114: response to red light	5.15E-09
20	GO:0010207: photosystem II assembly	6.02E-09
21	GO:0010218: response to far red light	4.87E-08
22	GO:0006094: gluconeogenesis	3.75E-07
23	GO:0035304: regulation of protein dephosphorylation	1.89E-06
24	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.89E-06
25	GO:0009637: response to blue light	2.39E-06
26	GO:0010206: photosystem II repair	5.88E-06
27	GO:0006000: fructose metabolic process	6.94E-06
28	GO:0010205: photoinhibition	8.00E-06
29	GO:0019684: photosynthesis, light reaction	1.37E-05
30	GO:0010027: thylakoid membrane organization	1.83E-05
31	GO:0006021: inositol biosynthetic process	2.94E-05
32	GO:0010021: amylopectin biosynthetic process	2.94E-05
33	GO:0009765: photosynthesis, light harvesting	2.94E-05
34	GO:0009409: response to cold	4.65E-05
35	GO:0009269: response to desiccation	6.16E-05
36	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	6.98E-05
37	GO:0009416: response to light stimulus	7.23E-05
38	GO:0006659: phosphatidylserine biosynthetic process	2.00E-04
39	GO:0080093: regulation of photorespiration	2.00E-04
40	GO:0031998: regulation of fatty acid beta-oxidation	2.00E-04
41	GO:0006002: fructose 6-phosphate metabolic process	2.04E-04
42	GO:0006098: pentose-phosphate shunt	2.49E-04
43	GO:0042742: defense response to bacterium	4.30E-04
44	GO:0016560: protein import into peroxisome matrix, docking	4.48E-04
45	GO:0016124: xanthophyll catabolic process	4.48E-04
46	GO:0097054: L-glutamate biosynthetic process	4.48E-04
47	GO:0006729: tetrahydrobiopterin biosynthetic process	4.48E-04
48	GO:0016121: carotene catabolic process	4.48E-04
49	GO:0051262: protein tetramerization	4.48E-04
50	GO:0005983: starch catabolic process	4.63E-04
51	GO:0005986: sucrose biosynthetic process	5.25E-04
52	GO:0009266: response to temperature stimulus	5.92E-04
53	GO:0090391: granum assembly	7.29E-04
54	GO:0035436: triose phosphate transmembrane transport	7.29E-04
55	GO:0016050: vesicle organization	7.29E-04
56	GO:1902448: positive regulation of shade avoidance	7.29E-04
57	GO:0006537: glutamate biosynthetic process	1.04E-03
58	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.04E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.04E-03
60	GO:0071484: cellular response to light intensity	1.04E-03
61	GO:0010017: red or far-red light signaling pathway	1.07E-03
62	GO:0010600: regulation of auxin biosynthetic process	1.38E-03
63	GO:0030104: water homeostasis	1.38E-03
64	GO:0006552: leucine catabolic process	1.38E-03
65	GO:0015713: phosphoglycerate transport	1.38E-03
66	GO:0010109: regulation of photosynthesis	1.38E-03
67	GO:0019676: ammonia assimilation cycle	1.38E-03
68	GO:0015976: carbon utilization	1.38E-03
69	GO:0010023: proanthocyanidin biosynthetic process	1.38E-03
70	GO:0006109: regulation of carbohydrate metabolic process	1.38E-03
71	GO:0045727: positive regulation of translation	1.38E-03
72	GO:0015994: chlorophyll metabolic process	1.38E-03
73	GO:0009735: response to cytokinin	1.44E-03
74	GO:0080167: response to karrikin	1.60E-03
75	GO:0009646: response to absence of light	1.70E-03
76	GO:0016120: carotene biosynthetic process	1.76E-03
77	GO:0006097: glyoxylate cycle	1.76E-03
78	GO:0035434: copper ion transmembrane transport	1.76E-03
79	GO:0016123: xanthophyll biosynthetic process	1.76E-03
80	GO:0019252: starch biosynthetic process	1.82E-03
81	GO:0008654: phospholipid biosynthetic process	1.82E-03
82	GO:0045454: cell redox homeostasis	2.10E-03
83	GO:0010190: cytochrome b6f complex assembly	2.17E-03
84	GO:0009635: response to herbicide	2.17E-03
85	GO:0009643: photosynthetic acclimation	2.17E-03
86	GO:0050665: hydrogen peroxide biosynthetic process	2.17E-03
87	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.60E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	2.60E-03
89	GO:1900057: positive regulation of leaf senescence	3.06E-03
90	GO:0022904: respiratory electron transport chain	3.06E-03
91	GO:0071446: cellular response to salicylic acid stimulus	3.06E-03
92	GO:0015995: chlorophyll biosynthetic process	3.29E-03
93	GO:0016311: dephosphorylation	3.47E-03
94	GO:0007623: circadian rhythm	3.50E-03
95	GO:0009642: response to light intensity	3.55E-03
96	GO:0006605: protein targeting	3.55E-03
97	GO:0010928: regulation of auxin mediated signaling pathway	3.55E-03
98	GO:0005978: glycogen biosynthetic process	3.55E-03
99	GO:0000160: phosphorelay signal transduction system	3.83E-03
100	GO:0032544: plastid translation	4.06E-03
101	GO:0017004: cytochrome complex assembly	4.06E-03
102	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.06E-03
103	GO:0090333: regulation of stomatal closure	4.60E-03
104	GO:0055114: oxidation-reduction process	5.11E-03
105	GO:0005982: starch metabolic process	5.15E-03
106	GO:0009688: abscisic acid biosynthetic process	5.74E-03
107	GO:0048829: root cap development	5.74E-03
108	GO:0031627: telomeric loop formation	5.74E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
110	GO:0043085: positive regulation of catalytic activity	6.34E-03
111	GO:0000272: polysaccharide catabolic process	6.34E-03
112	GO:0009750: response to fructose	6.34E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	6.34E-03
114	GO:0016485: protein processing	6.34E-03
115	GO:0009698: phenylpropanoid metabolic process	6.34E-03
116	GO:0006970: response to osmotic stress	6.70E-03
117	GO:0045037: protein import into chloroplast stroma	6.96E-03
118	GO:0010628: positive regulation of gene expression	7.61E-03
119	GO:0006108: malate metabolic process	7.61E-03
120	GO:0009718: anthocyanin-containing compound biosynthetic process	7.61E-03
121	GO:0009767: photosynthetic electron transport chain	7.61E-03
122	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
123	GO:0006302: double-strand break repair	8.28E-03
124	GO:0005985: sucrose metabolic process	8.97E-03
125	GO:0090351: seedling development	8.97E-03
126	GO:0006096: glycolytic process	9.48E-03
127	GO:0006636: unsaturated fatty acid biosynthetic process	9.68E-03
128	GO:0006825: copper ion transport	1.12E-02
129	GO:0051321: meiotic cell cycle	1.19E-02
130	GO:0048511: rhythmic process	1.19E-02
131	GO:0009693: ethylene biosynthetic process	1.35E-02
132	GO:0071215: cellular response to abscisic acid stimulus	1.35E-02
133	GO:0040007: growth	1.35E-02
134	GO:0009561: megagametogenesis	1.43E-02
135	GO:0016117: carotenoid biosynthetic process	1.52E-02
136	GO:0042631: cellular response to water deprivation	1.60E-02
137	GO:0006662: glycerol ether metabolic process	1.69E-02
138	GO:0010182: sugar mediated signaling pathway	1.69E-02
139	GO:0009791: post-embryonic development	1.87E-02
140	GO:0071554: cell wall organization or biogenesis	1.97E-02
141	GO:0048235: pollen sperm cell differentiation	2.06E-02
142	GO:0009737: response to abscisic acid	2.14E-02
143	GO:0010090: trichome morphogenesis	2.16E-02
144	GO:0051607: defense response to virus	2.45E-02
145	GO:0048573: photoperiodism, flowering	2.87E-02
146	GO:0009658: chloroplast organization	3.07E-02
147	GO:0009834: plant-type secondary cell wall biogenesis	3.31E-02
148	GO:0048527: lateral root development	3.42E-02
149	GO:0010119: regulation of stomatal movement	3.42E-02
150	GO:0006810: transport	3.53E-02
151	GO:0009853: photorespiration	3.65E-02
152	GO:0034599: cellular response to oxidative stress	3.77E-02
153	GO:0006099: tricarboxylic acid cycle	3.77E-02
154	GO:0042542: response to hydrogen peroxide	4.25E-02
155	GO:0009640: photomorphogenesis	4.37E-02
156	GO:0009744: response to sucrose	4.37E-02
157	GO:0045892: negative regulation of transcription, DNA-templated	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
2	GO:0010242: oxygen evolving activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0048039: ubiquinone binding	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
8	GO:0051738: xanthophyll binding	0.00E+00
9	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
10	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
11	GO:0031409: pigment binding	2.24E-24
12	GO:0016168: chlorophyll binding	1.05E-21
13	GO:0008266: poly(U) RNA binding	5.02E-07
14	GO:0004512: inositol-3-phosphate synthase activity	1.89E-06
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.89E-06
16	GO:0004332: fructose-bisphosphate aldolase activity	6.98E-05
17	GO:0045485: omega-6 fatty acid desaturase activity	2.00E-04
18	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.00E-04
19	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.00E-04
20	GO:0016041: glutamate synthase (ferredoxin) activity	2.00E-04
21	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.00E-04
22	GO:0005227: calcium activated cation channel activity	2.00E-04
23	GO:0071949: FAD binding	2.49E-04
24	GO:0046872: metal ion binding	4.47E-04
25	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.48E-04
26	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.48E-04
27	GO:0008967: phosphoglycolate phosphatase activity	4.48E-04
28	GO:0047746: chlorophyllase activity	4.48E-04
29	GO:0010297: heteropolysaccharide binding	4.48E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	4.48E-04
31	GO:0004565: beta-galactosidase activity	5.25E-04
32	GO:0031072: heat shock protein binding	5.25E-04
33	GO:0003913: DNA photolyase activity	7.29E-04
34	GO:0071917: triose-phosphate transmembrane transporter activity	7.29E-04
35	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.29E-04
36	GO:0004324: ferredoxin-NADP+ reductase activity	7.29E-04
37	GO:0043169: cation binding	7.29E-04
38	GO:0004373: glycogen (starch) synthase activity	7.29E-04
39	GO:0016851: magnesium chelatase activity	1.04E-03
40	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.04E-03
41	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.04E-03
42	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.04E-03
43	GO:0009011: starch synthase activity	1.38E-03
44	GO:0008891: glycolate oxidase activity	1.38E-03
45	GO:0015120: phosphoglycerate transmembrane transporter activity	1.38E-03
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.38E-03
47	GO:0003959: NADPH dehydrogenase activity	1.76E-03
48	GO:0051538: 3 iron, 4 sulfur cluster binding	1.76E-03
49	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.76E-03
50	GO:0016615: malate dehydrogenase activity	2.17E-03
51	GO:0000156: phosphorelay response regulator activity	2.21E-03
52	GO:0019843: rRNA binding	2.33E-03
53	GO:0004017: adenylate kinase activity	2.60E-03
54	GO:0030060: L-malate dehydrogenase activity	2.60E-03
55	GO:0005261: cation channel activity	2.60E-03
56	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.60E-03
57	GO:0016491: oxidoreductase activity	2.77E-03
58	GO:0009881: photoreceptor activity	3.06E-03
59	GO:0005515: protein binding	3.25E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-03
61	GO:0005375: copper ion transmembrane transporter activity	4.06E-03
62	GO:0005509: calcium ion binding	5.03E-03
63	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.15E-03
64	GO:0008047: enzyme activator activity	5.74E-03
65	GO:0003691: double-stranded telomeric DNA binding	6.34E-03
66	GO:0016787: hydrolase activity	7.20E-03
67	GO:0004089: carbonate dehydratase activity	7.61E-03
68	GO:0003712: transcription cofactor activity	8.97E-03
69	GO:0004857: enzyme inhibitor activity	1.04E-02
70	GO:0051082: unfolded protein binding	1.14E-02
71	GO:0015035: protein disulfide oxidoreductase activity	1.18E-02
72	GO:0004176: ATP-dependent peptidase activity	1.19E-02
73	GO:0008408: 3'-5' exonuclease activity	1.19E-02
74	GO:0022891: substrate-specific transmembrane transporter activity	1.35E-02
75	GO:0003756: protein disulfide isomerase activity	1.43E-02
76	GO:0047134: protein-disulfide reductase activity	1.52E-02
77	GO:0010181: FMN binding	1.78E-02
78	GO:0050662: coenzyme binding	1.78E-02
79	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-02
80	GO:0048038: quinone binding	1.97E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.16E-02
82	GO:0016413: O-acetyltransferase activity	2.45E-02
83	GO:0042802: identical protein binding	2.52E-02
84	GO:0008236: serine-type peptidase activity	2.98E-02
85	GO:0030145: manganese ion binding	3.42E-02
86	GO:0003746: translation elongation factor activity	3.65E-02
87	GO:0003993: acid phosphatase activity	3.77E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	4.01E-02
89	GO:0004185: serine-type carboxypeptidase activity	4.37E-02
90	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0043233: organelle lumen	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
6	GO:0009534: chloroplast thylakoid	4.84E-62
7	GO:0009535: chloroplast thylakoid membrane	4.02E-49
8	GO:0009507: chloroplast	6.22E-44
9	GO:0009941: chloroplast envelope	5.47E-38
10	GO:0009579: thylakoid	2.19E-35
11	GO:0010287: plastoglobule	1.26E-31
12	GO:0030076: light-harvesting complex	3.07E-22
13	GO:0009522: photosystem I	2.16E-21
14	GO:0009570: chloroplast stroma	2.14E-18
15	GO:0009523: photosystem II	6.98E-15
16	GO:0009517: PSII associated light-harvesting complex II	2.51E-13
17	GO:0030095: chloroplast photosystem II	5.50E-11
18	GO:0031977: thylakoid lumen	9.11E-11
19	GO:0009543: chloroplast thylakoid lumen	5.15E-09
20	GO:0042651: thylakoid membrane	2.17E-08
21	GO:0009654: photosystem II oxygen evolving complex	2.17E-08
22	GO:0009538: photosystem I reaction center	2.19E-08
23	GO:0019898: extrinsic component of membrane	1.81E-07
24	GO:0048046: apoplast	4.34E-07
25	GO:0055035: plastid thylakoid membrane	4.73E-05
26	GO:0009501: amyloplast	1.64E-04
27	GO:0009515: granal stacked thylakoid	2.00E-04
28	GO:0009782: photosystem I antenna complex	2.00E-04
29	GO:0000791: euchromatin	2.00E-04
30	GO:0016020: membrane	2.13E-04
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-04
32	GO:0009706: chloroplast inner membrane	2.53E-04
33	GO:0030093: chloroplast photosystem I	4.48E-04
34	GO:0030870: Mre11 complex	4.48E-04
35	GO:0043036: starch grain	4.48E-04
36	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.48E-04
37	GO:0009508: plastid chromosome	5.25E-04
38	GO:0016021: integral component of membrane	5.73E-04
39	GO:0010007: magnesium chelatase complex	7.29E-04
40	GO:0009509: chromoplast	7.29E-04
41	GO:0005782: peroxisomal matrix	7.29E-04
42	GO:0031969: chloroplast membrane	1.60E-03
43	GO:0000795: synaptonemal complex	1.76E-03
44	GO:0005623: cell	2.41E-03
45	GO:0009295: nucleoid	2.50E-03
46	GO:0010319: stromule	2.50E-03
47	GO:0009533: chloroplast stromal thylakoid	3.06E-03
48	GO:0031305: integral component of mitochondrial inner membrane	3.55E-03
49	GO:0000783: nuclear telomere cap complex	4.06E-03
50	GO:0008180: COP9 signalosome	4.60E-03
51	GO:0005740: mitochondrial envelope	5.74E-03
52	GO:0005777: peroxisome	8.54E-03
53	GO:0000785: chromatin	2.06E-02
54	GO:0005840: ribosome	2.15E-02
55	GO:0019005: SCF ubiquitin ligase complex	3.09E-02
56	GO:0005773: vacuole	4.01E-02