Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G29330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0008298: intracellular mRNA localization0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0098586: cellular response to virus0.00E+00
6GO:0017009: protein-phycocyanobilin linkage0.00E+00
7GO:0009304: tRNA transcription0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0000256: allantoin catabolic process4.70E-06
13GO:0005977: glycogen metabolic process1.67E-05
14GO:0010136: ureide catabolic process1.67E-05
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.71E-05
16GO:0006145: purine nucleobase catabolic process3.71E-05
17GO:0009773: photosynthetic electron transport in photosystem I4.17E-05
18GO:0015979: photosynthesis4.95E-05
19GO:0009767: photosynthetic electron transport chain6.40E-05
20GO:0009902: chloroplast relocation6.61E-05
21GO:0010021: amylopectin biosynthetic process6.61E-05
22GO:0019253: reductive pentose-phosphate cycle7.75E-05
23GO:0015995: chlorophyll biosynthetic process9.49E-05
24GO:0016123: xanthophyll biosynthetic process1.04E-04
25GO:0071470: cellular response to osmotic stress2.05E-04
26GO:0055114: oxidation-reduction process2.34E-04
27GO:1904964: positive regulation of phytol biosynthetic process3.22E-04
28GO:0042371: vitamin K biosynthetic process3.22E-04
29GO:0010028: xanthophyll cycle3.22E-04
30GO:0010362: negative regulation of anion channel activity by blue light3.22E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
32GO:0031426: polycistronic mRNA processing3.22E-04
33GO:0033388: putrescine biosynthetic process from arginine3.22E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process3.22E-04
35GO:0071277: cellular response to calcium ion3.22E-04
36GO:0048564: photosystem I assembly3.36E-04
37GO:0000373: Group II intron splicing4.95E-04
38GO:0009638: phototropism5.85E-04
39GO:0009446: putrescine biosynthetic process7.02E-04
40GO:0046741: transport of virus in host, tissue to tissue7.02E-04
41GO:0042853: L-alanine catabolic process7.02E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process7.02E-04
43GO:2000030: regulation of response to red or far red light7.02E-04
44GO:0080005: photosystem stoichiometry adjustment7.02E-04
45GO:0048314: embryo sac morphogenesis7.02E-04
46GO:0019752: carboxylic acid metabolic process7.02E-04
47GO:0006435: threonyl-tRNA aminoacylation7.02E-04
48GO:0030187: melatonin biosynthetic process7.02E-04
49GO:0009658: chloroplast organization7.23E-04
50GO:0018119: peptidyl-cysteine S-nitrosylation7.88E-04
51GO:0018298: protein-chromophore linkage9.92E-04
52GO:0006006: glucose metabolic process1.02E-03
53GO:0009405: pathogenesis1.14E-03
54GO:0090391: granum assembly1.14E-03
55GO:0006013: mannose metabolic process1.14E-03
56GO:0002230: positive regulation of defense response to virus by host1.14E-03
57GO:1901672: positive regulation of systemic acquired resistance1.14E-03
58GO:0009853: photorespiration1.33E-03
59GO:0043572: plastid fission1.63E-03
60GO:0071484: cellular response to light intensity1.63E-03
61GO:0010239: chloroplast mRNA processing1.63E-03
62GO:0090307: mitotic spindle assembly1.63E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch1.63E-03
64GO:0009650: UV protection1.63E-03
65GO:0051016: barbed-end actin filament capping1.63E-03
66GO:0046739: transport of virus in multicellular host1.63E-03
67GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.63E-03
68GO:0007017: microtubule-based process1.74E-03
69GO:0031935: regulation of chromatin silencing2.19E-03
70GO:0009765: photosynthesis, light harvesting2.19E-03
71GO:0031122: cytoplasmic microtubule organization2.19E-03
72GO:0006021: inositol biosynthetic process2.19E-03
73GO:0006282: regulation of DNA repair2.80E-03
74GO:0034052: positive regulation of plant-type hypersensitive response2.80E-03
75GO:0016558: protein import into peroxisome matrix2.80E-03
76GO:0016120: carotene biosynthetic process2.80E-03
77GO:0006656: phosphatidylcholine biosynthetic process2.80E-03
78GO:0043097: pyrimidine nucleoside salvage2.80E-03
79GO:0010117: photoprotection2.80E-03
80GO:0006564: L-serine biosynthetic process2.80E-03
81GO:0006096: glycolytic process3.33E-03
82GO:0009643: photosynthetic acclimation3.46E-03
83GO:0050665: hydrogen peroxide biosynthetic process3.46E-03
84GO:0006206: pyrimidine nucleobase metabolic process3.46E-03
85GO:0000741: karyogamy3.46E-03
86GO:0046855: inositol phosphate dephosphorylation3.46E-03
87GO:0019252: starch biosynthetic process3.60E-03
88GO:0009791: post-embryonic development3.60E-03
89GO:0019761: glucosinolate biosynthetic process4.11E-03
90GO:0010189: vitamin E biosynthetic process4.17E-03
91GO:0009854: oxidative photosynthetic carbon pathway4.17E-03
92GO:0009793: embryo development ending in seed dormancy4.58E-03
93GO:0080167: response to karrikin4.60E-03
94GO:0006810: transport4.65E-03
95GO:0009735: response to cytokinin4.88E-03
96GO:0048528: post-embryonic root development4.92E-03
97GO:0009772: photosynthetic electron transport in photosystem II4.92E-03
98GO:1900056: negative regulation of leaf senescence4.92E-03
99GO:0009787: regulation of abscisic acid-activated signaling pathway5.71E-03
100GO:0009642: response to light intensity5.71E-03
101GO:0030091: protein repair5.71E-03
102GO:0042255: ribosome assembly5.71E-03
103GO:0006353: DNA-templated transcription, termination5.71E-03
104GO:0009704: de-etiolation5.71E-03
105GO:0009816: defense response to bacterium, incompatible interaction5.89E-03
106GO:0009058: biosynthetic process6.00E-03
107GO:0009657: plastid organization6.55E-03
108GO:0098656: anion transmembrane transport7.42E-03
109GO:0006098: pentose-phosphate shunt7.42E-03
110GO:0009821: alkaloid biosynthetic process7.42E-03
111GO:0048507: meristem development7.42E-03
112GO:0090333: regulation of stomatal closure7.42E-03
113GO:0032259: methylation7.80E-03
114GO:0006811: ion transport8.02E-03
115GO:1900426: positive regulation of defense response to bacterium8.34E-03
116GO:0009098: leucine biosynthetic process8.34E-03
117GO:0010380: regulation of chlorophyll biosynthetic process8.34E-03
118GO:0009451: RNA modification8.71E-03
119GO:0045036: protein targeting to chloroplast9.30E-03
120GO:0006949: syncytium formation9.30E-03
121GO:0006259: DNA metabolic process9.30E-03
122GO:0006265: DNA topological change1.03E-02
123GO:0006790: sulfur compound metabolic process1.13E-02
124GO:0009409: response to cold1.15E-02
125GO:0009744: response to sucrose1.19E-02
126GO:0009725: response to hormone1.24E-02
127GO:0006094: gluconeogenesis1.24E-02
128GO:0006807: nitrogen compound metabolic process1.24E-02
129GO:0009644: response to high light intensity1.29E-02
130GO:0010020: chloroplast fission1.35E-02
131GO:0046854: phosphatidylinositol phosphorylation1.46E-02
132GO:0019853: L-ascorbic acid biosynthetic process1.46E-02
133GO:0006863: purine nucleobase transport1.58E-02
134GO:0006833: water transport1.58E-02
135GO:0009585: red, far-red light phototransduction1.61E-02
136GO:0009863: salicylic acid mediated signaling pathway1.70E-02
137GO:0080147: root hair cell development1.70E-02
138GO:0051302: regulation of cell division1.83E-02
139GO:0051321: meiotic cell cycle1.95E-02
140GO:0009416: response to light stimulus1.98E-02
141GO:0080092: regulation of pollen tube growth2.08E-02
142GO:0006730: one-carbon metabolic process2.08E-02
143GO:0009625: response to insect2.22E-02
144GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.22E-02
145GO:0009411: response to UV2.22E-02
146GO:0009553: embryo sac development2.23E-02
147GO:0016117: carotenoid biosynthetic process2.49E-02
148GO:0008033: tRNA processing2.63E-02
149GO:0034220: ion transmembrane transport2.63E-02
150GO:0010118: stomatal movement2.63E-02
151GO:0006606: protein import into nucleus2.63E-02
152GO:0010197: polar nucleus fusion2.78E-02
153GO:0048868: pollen tube development2.78E-02
154GO:0071472: cellular response to salt stress2.78E-02
155GO:0055085: transmembrane transport2.82E-02
156GO:0015986: ATP synthesis coupled proton transport2.92E-02
157GO:0007059: chromosome segregation2.92E-02
158GO:0008654: phospholipid biosynthetic process3.07E-02
159GO:0006635: fatty acid beta-oxidation3.23E-02
160GO:0000302: response to reactive oxygen species3.23E-02
161GO:0010193: response to ozone3.23E-02
162GO:0032502: developmental process3.38E-02
163GO:0031047: gene silencing by RNA3.38E-02
164GO:0016032: viral process3.38E-02
165GO:0009828: plant-type cell wall loosening3.70E-02
166GO:0040008: regulation of growth3.78E-02
167GO:0007623: circadian rhythm3.96E-02
168GO:0051607: defense response to virus4.03E-02
169GO:0001666: response to hypoxia4.19E-02
170GO:0010411: xyloglucan metabolic process4.71E-02
171GO:0010468: regulation of gene expression4.72E-02
RankGO TermAdjusted P value
1GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0042623: ATPase activity, coupled0.00E+00
13GO:0010276: phytol kinase activity0.00E+00
14GO:0008974: phosphoribulokinase activity0.00E+00
15GO:0015229: L-ascorbic acid transporter activity0.00E+00
16GO:0019156: isoamylase activity4.70E-06
17GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.70E-06
18GO:0016851: magnesium chelatase activity3.71E-05
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.61E-05
20GO:0008453: alanine-glyoxylate transaminase activity6.61E-05
21GO:0000293: ferric-chelate reductase activity1.50E-04
22GO:0004556: alpha-amylase activity1.50E-04
23GO:0019899: enzyme binding2.67E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.22E-04
25GO:0030941: chloroplast targeting sequence binding3.22E-04
26GO:0010347: L-galactose-1-phosphate phosphatase activity3.22E-04
27GO:0035671: enone reductase activity3.22E-04
28GO:0004451: isocitrate lyase activity3.22E-04
29GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.22E-04
30GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity3.22E-04
31GO:0008080: N-acetyltransferase activity3.36E-04
32GO:0010181: FMN binding3.70E-04
33GO:0048038: quinone binding4.44E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity7.02E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity7.02E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity7.02E-04
38GO:0004829: threonine-tRNA ligase activity7.02E-04
39GO:0000234: phosphoethanolamine N-methyltransferase activity7.02E-04
40GO:0003862: 3-isopropylmalate dehydrogenase activity7.02E-04
41GO:0005089: Rho guanyl-nucleotide exchange factor activity7.88E-04
42GO:0070402: NADPH binding1.14E-03
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.14E-03
44GO:0010277: chlorophyllide a oxygenase [overall] activity1.14E-03
45GO:0004848: ureidoglycolate hydrolase activity1.14E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
47GO:0004751: ribose-5-phosphate isomerase activity1.14E-03
48GO:0016491: oxidoreductase activity1.19E-03
49GO:0009882: blue light photoreceptor activity1.63E-03
50GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.63E-03
51GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.63E-03
52GO:0048027: mRNA 5'-UTR binding1.63E-03
53GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.63E-03
54GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.63E-03
55GO:0008891: glycolate oxidase activity2.19E-03
56GO:0051861: glycolipid binding2.19E-03
57GO:0043015: gamma-tubulin binding2.19E-03
58GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.19E-03
59GO:0043495: protein anchor2.19E-03
60GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.19E-03
61GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
62GO:0051287: NAD binding2.35E-03
63GO:0003727: single-stranded RNA binding2.47E-03
64GO:0051011: microtubule minus-end binding2.80E-03
65GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.80E-03
66GO:0004605: phosphatidate cytidylyltransferase activity3.46E-03
67GO:0004332: fructose-bisphosphate aldolase activity3.46E-03
68GO:0004462: lactoylglutathione lyase activity3.46E-03
69GO:0004559: alpha-mannosidase activity4.17E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.17E-03
71GO:0015631: tubulin binding4.17E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.17E-03
73GO:0004849: uridine kinase activity4.17E-03
74GO:0004033: aldo-keto reductase (NADP) activity5.71E-03
75GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.80E-03
76GO:0016168: chlorophyll binding5.89E-03
77GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity6.55E-03
78GO:0016844: strictosidine synthase activity8.34E-03
79GO:0045309: protein phosphorylated amino acid binding8.34E-03
80GO:0009055: electron carrier activity9.26E-03
81GO:0004519: endonuclease activity9.46E-03
82GO:0001054: RNA polymerase I activity1.03E-02
83GO:0019904: protein domain specific binding1.03E-02
84GO:0001056: RNA polymerase III activity1.13E-02
85GO:0004364: glutathione transferase activity1.14E-02
86GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
87GO:0004089: carbonate dehydratase activity1.24E-02
88GO:0000155: phosphorelay sensor kinase activity1.24E-02
89GO:0008081: phosphoric diester hydrolase activity1.24E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.29E-02
91GO:0005345: purine nucleobase transmembrane transporter activity1.83E-02
92GO:0004176: ATP-dependent peptidase activity1.95E-02
93GO:0008514: organic anion transmembrane transporter activity2.35E-02
94GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.78E-02
95GO:0019843: rRNA binding2.88E-02
96GO:0016853: isomerase activity2.92E-02
97GO:0004872: receptor activity3.07E-02
98GO:0016829: lyase activity3.11E-02
99GO:0016762: xyloglucan:xyloglucosyl transferase activity3.23E-02
100GO:0003723: RNA binding3.38E-02
101GO:0008483: transaminase activity3.86E-02
102GO:0008237: metallopeptidase activity3.86E-02
103GO:0005200: structural constituent of cytoskeleton3.86E-02
104GO:0016597: amino acid binding4.03E-02
105GO:0015250: water channel activity4.19E-02
106GO:0016798: hydrolase activity, acting on glycosyl bonds4.71E-02
107GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.88E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast5.84E-44
3GO:0009535: chloroplast thylakoid membrane1.56E-22
4GO:0009570: chloroplast stroma7.47E-12
5GO:0009941: chloroplast envelope1.67E-07
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.86E-07
7GO:0009534: chloroplast thylakoid5.47E-07
8GO:0009579: thylakoid4.34E-06
9GO:0031969: chloroplast membrane3.36E-05
10GO:0010319: stromule5.60E-05
11GO:0030286: dynein complex6.61E-05
12GO:0009654: photosystem II oxygen evolving complex1.47E-04
13GO:0042651: thylakoid membrane1.47E-04
14GO:0008274: gamma-tubulin ring complex7.02E-04
15GO:0008290: F-actin capping protein complex7.02E-04
16GO:0009706: chloroplast inner membrane7.46E-04
17GO:0009707: chloroplast outer membrane9.92E-04
18GO:0009543: chloroplast thylakoid lumen1.05E-03
19GO:0030095: chloroplast photosystem II1.14E-03
20GO:0010007: magnesium chelatase complex1.14E-03
21GO:0000923: equatorial microtubule organizing center1.63E-03
22GO:0031977: thylakoid lumen1.66E-03
23GO:0048046: apoplast2.03E-03
24GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.19E-03
25GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.46E-03
26GO:0009523: photosystem II3.60E-03
27GO:0019898: extrinsic component of membrane3.60E-03
28GO:0031359: integral component of chloroplast outer membrane4.92E-03
29GO:0009295: nucleoid4.95E-03
30GO:0009539: photosystem II reaction center6.55E-03
31GO:0005736: DNA-directed RNA polymerase I complex7.42E-03
32GO:0042644: chloroplast nucleoid7.42E-03
33GO:0000922: spindle pole7.42E-03
34GO:0005666: DNA-directed RNA polymerase III complex8.34E-03
35GO:0016324: apical plasma membrane9.30E-03
36GO:0048471: perinuclear region of cytoplasm1.03E-02
37GO:0009508: plastid chromosome1.24E-02
38GO:0005875: microtubule associated complex1.58E-02
39GO:0045271: respiratory chain complex I1.83E-02
40GO:0005747: mitochondrial respiratory chain complex I1.97E-02
41GO:0005777: peroxisome2.43E-02
42GO:0010287: plastoglobule2.73E-02
43GO:0009505: plant-type cell wall2.83E-02
44GO:0005778: peroxisomal membrane3.86E-02
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Gene type



Gene DE type