co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0010477: response to sulfur dioxide	0.00E+00
3	GO:0010336: gibberellic acid homeostasis	0.00E+00
4	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
5	GO:0042908: xenobiotic transport	0.00E+00
6	GO:0018293: protein-FAD linkage	0.00E+00
7	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0055114: oxidation-reduction process	3.16E-10
10	GO:0006508: proteolysis	4.87E-05
11	GO:0044550: secondary metabolite biosynthetic process	6.03E-05
12	GO:0006099: tricarboxylic acid cycle	6.12E-05
13	GO:0006555: methionine metabolic process	7.50E-05
14	GO:0019509: L-methionine salvage from methylthioadenosine	1.04E-04
15	GO:0050790: regulation of catalytic activity	1.37E-04
16	GO:0051603: proteolysis involved in cellular protein catabolic process	1.64E-04
17	GO:0006102: isocitrate metabolic process	1.76E-04
18	GO:0031539: positive regulation of anthocyanin metabolic process	2.09E-04
19	GO:0009700: indole phytoalexin biosynthetic process	2.09E-04
20	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	2.09E-04
21	GO:1903409: reactive oxygen species biosynthetic process	2.09E-04
22	GO:0006750: glutathione biosynthetic process	2.09E-04
23	GO:0006835: dicarboxylic acid transport	2.09E-04
24	GO:2000030: regulation of response to red or far red light	4.66E-04
25	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.66E-04
26	GO:0019441: tryptophan catabolic process to kynurenine	4.66E-04
27	GO:0080183: response to photooxidative stress	4.66E-04
28	GO:0043100: pyrimidine nucleobase salvage	4.66E-04
29	GO:0042754: negative regulation of circadian rhythm	4.66E-04
30	GO:0002213: defense response to insect	4.92E-04
31	GO:0007568: aging	5.45E-04
32	GO:0042343: indole glucosinolate metabolic process	7.02E-04
33	GO:1901562: response to paraquat	7.59E-04
34	GO:0044375: regulation of peroxisome size	7.59E-04
35	GO:0019419: sulfate reduction	7.59E-04
36	GO:0098542: defense response to other organism	1.04E-03
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.08E-03
38	GO:0010148: transpiration	1.08E-03
39	GO:0009963: positive regulation of flavonoid biosynthetic process	1.08E-03
40	GO:0015700: arsenite transport	1.08E-03
41	GO:1902476: chloride transmembrane transport	1.08E-03
42	GO:0016226: iron-sulfur cluster assembly	1.13E-03
43	GO:0010017: red or far-red light signaling pathway	1.13E-03
44	GO:0015846: polyamine transport	1.44E-03
45	GO:0009902: chloroplast relocation	1.44E-03
46	GO:0009694: jasmonic acid metabolic process	1.44E-03
47	GO:0006646: phosphatidylethanolamine biosynthetic process	1.44E-03
48	GO:0070534: protein K63-linked ubiquitination	1.44E-03
49	GO:0015743: malate transport	1.44E-03
50	GO:0015994: chlorophyll metabolic process	1.44E-03
51	GO:0042391: regulation of membrane potential	1.56E-03
52	GO:0009696: salicylic acid metabolic process	1.83E-03
53	GO:0010236: plastoquinone biosynthetic process	1.83E-03
54	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.26E-03
55	GO:0006301: postreplication repair	2.26E-03
56	GO:0045454: cell redox homeostasis	2.32E-03
57	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.71E-03
58	GO:0010189: vitamin E biosynthetic process	2.71E-03
59	GO:1901001: negative regulation of response to salt stress	2.71E-03
60	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.20E-03
61	GO:0006821: chloride transport	3.20E-03
62	GO:0080027: response to herbivore	3.20E-03
63	GO:0006955: immune response	3.20E-03
64	GO:0009627: systemic acquired resistance	3.32E-03
65	GO:0042128: nitrate assimilation	3.32E-03
66	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.71E-03
67	GO:0030091: protein repair	3.71E-03
68	GO:0016559: peroxisome fission	3.71E-03
69	GO:0009817: defense response to fungus, incompatible interaction	3.88E-03
70	GO:0048574: long-day photoperiodism, flowering	4.24E-03
71	GO:0010099: regulation of photomorphogenesis	4.24E-03
72	GO:0015996: chlorophyll catabolic process	4.24E-03
73	GO:0009407: toxin catabolic process	4.28E-03
74	GO:0009821: alkaloid biosynthetic process	4.80E-03
75	GO:0046685: response to arsenic-containing substance	4.80E-03
76	GO:0051453: regulation of intracellular pH	5.38E-03
77	GO:0000103: sulfate assimilation	5.99E-03
78	GO:0045036: protein targeting to chloroplast	5.99E-03
79	GO:0052544: defense response by callose deposition in cell wall	6.62E-03
80	GO:0006879: cellular iron ion homeostasis	6.62E-03
81	GO:0000272: polysaccharide catabolic process	6.62E-03
82	GO:0006790: sulfur compound metabolic process	7.28E-03
83	GO:0009723: response to ethylene	7.96E-03
84	GO:0006108: malate metabolic process	7.96E-03
85	GO:0050826: response to freezing	7.96E-03
86	GO:0080167: response to karrikin	8.69E-03
87	GO:0019853: L-ascorbic acid biosynthetic process	9.37E-03
88	GO:0009225: nucleotide-sugar metabolic process	9.37E-03
89	GO:0007031: peroxisome organization	9.37E-03
90	GO:0034976: response to endoplasmic reticulum stress	1.01E-02
91	GO:0042753: positive regulation of circadian rhythm	1.01E-02
92	GO:0051017: actin filament bundle assembly	1.09E-02
93	GO:0019344: cysteine biosynthetic process	1.09E-02
94	GO:0008299: isoprenoid biosynthetic process	1.17E-02
95	GO:0019748: secondary metabolic process	1.33E-02
96	GO:0009693: ethylene biosynthetic process	1.41E-02
97	GO:0006012: galactose metabolic process	1.41E-02
98	GO:0009753: response to jasmonic acid	1.56E-02
99	GO:0009058: biosynthetic process	1.61E-02
100	GO:0080022: primary root development	1.68E-02
101	GO:0009958: positive gravitropism	1.77E-02
102	GO:0006520: cellular amino acid metabolic process	1.77E-02
103	GO:0009741: response to brassinosteroid	1.77E-02
104	GO:0006814: sodium ion transport	1.86E-02
105	GO:0042752: regulation of circadian rhythm	1.86E-02
106	GO:0008654: phospholipid biosynthetic process	1.96E-02
107	GO:0010193: response to ozone	2.06E-02
108	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.06E-02
109	GO:0007623: circadian rhythm	2.11E-02
110	GO:0019761: glucosinolate biosynthetic process	2.15E-02
111	GO:1901657: glycosyl compound metabolic process	2.25E-02
112	GO:0030163: protein catabolic process	2.25E-02
113	GO:0006464: cellular protein modification process	2.36E-02
114	GO:0009615: response to virus	2.67E-02
115	GO:0016126: sterol biosynthetic process	2.67E-02
116	GO:0009816: defense response to bacterium, incompatible interaction	2.78E-02
117	GO:0015995: chlorophyll biosynthetic process	3.00E-02
118	GO:0010411: xyloglucan metabolic process	3.00E-02
119	GO:0018298: protein-chromophore linkage	3.23E-02
120	GO:0010218: response to far red light	3.46E-02
121	GO:0010043: response to zinc ion	3.58E-02
122	GO:0055085: transmembrane transport	3.94E-02
123	GO:0046686: response to cadmium ion	4.21E-02
124	GO:0009640: photomorphogenesis	4.57E-02
125	GO:0010114: response to red light	4.57E-02
126	GO:0042546: cell wall biogenesis	4.71E-02
127	GO:0009636: response to toxic substance	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
3	GO:0004357: glutamate-cysteine ligase activity	0.00E+00
4	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
5	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
6	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
7	GO:0008482: sulfite oxidase activity	0.00E+00
8	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
9	GO:0042030: ATPase inhibitor activity	0.00E+00
10	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
11	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
12	GO:0000250: lanosterol synthase activity	0.00E+00
13	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.06E-06
14	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.54E-06
15	GO:0016491: oxidoreductase activity	8.67E-06
16	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.73E-05
17	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	9.27E-05
18	GO:0005261: cation channel activity	1.04E-04
19	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.09E-04
20	GO:0009671: nitrate:proton symporter activity	2.09E-04
21	GO:0016783: sulfurtransferase activity	2.09E-04
22	GO:0071992: phytochelatin transmembrane transporter activity	2.09E-04
23	GO:0004307: ethanolaminephosphotransferase activity	2.09E-04
24	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	2.09E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.09E-04
26	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2.09E-04
27	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.09E-04
28	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.09E-04
29	GO:0046480: galactolipid galactosyltransferase activity	2.09E-04
30	GO:0080079: cellobiose glucosidase activity	2.09E-04
31	GO:0004733: pyridoxamine-phosphate oxidase activity	2.09E-04
32	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.09E-04
33	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.09E-04
34	GO:0001530: lipopolysaccharide binding	2.09E-04
35	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	2.09E-04
36	GO:0004197: cysteine-type endopeptidase activity	2.12E-04
37	GO:0020037: heme binding	3.95E-04
38	GO:0008236: serine-type peptidase activity	4.24E-04
39	GO:0030572: phosphatidyltransferase activity	4.66E-04
40	GO:0004046: aminoacylase activity	4.66E-04
41	GO:0004142: diacylglycerol cholinephosphotransferase activity	4.66E-04
42	GO:0009973: adenylyl-sulfate reductase activity	4.66E-04
43	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	4.66E-04
44	GO:0004061: arylformamidase activity	4.66E-04
45	GO:0004362: glutathione-disulfide reductase activity	4.66E-04
46	GO:0004566: beta-glucuronidase activity	4.66E-04
47	GO:0015179: L-amino acid transmembrane transporter activity	4.66E-04
48	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	4.66E-04
49	GO:0050347: trans-octaprenyltranstransferase activity	4.66E-04
50	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.66E-04
51	GO:0005506: iron ion binding	4.79E-04
52	GO:0030552: cAMP binding	7.02E-04
53	GO:0030553: cGMP binding	7.02E-04
54	GO:0003913: DNA photolyase activity	7.59E-04
55	GO:0004557: alpha-galactosidase activity	7.59E-04
56	GO:0016805: dipeptidase activity	7.59E-04
57	GO:0004180: carboxypeptidase activity	7.59E-04
58	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.59E-04
59	GO:0004185: serine-type carboxypeptidase activity	8.42E-04
60	GO:0019825: oxygen binding	9.10E-04
61	GO:0005216: ion channel activity	9.49E-04
62	GO:0051287: NAD binding	1.07E-03
63	GO:0015203: polyamine transmembrane transporter activity	1.08E-03
64	GO:0004792: thiosulfate sulfurtransferase activity	1.08E-03
65	GO:0080031: methyl salicylate esterase activity	1.08E-03
66	GO:0000254: C-4 methylsterol oxidase activity	1.08E-03
67	GO:0016788: hydrolase activity, acting on ester bonds	1.31E-03
68	GO:0008234: cysteine-type peptidase activity	1.38E-03
69	GO:0016866: intramolecular transferase activity	1.44E-03
70	GO:0005253: anion channel activity	1.44E-03
71	GO:0004301: epoxide hydrolase activity	1.44E-03
72	GO:0080032: methyl jasmonate esterase activity	1.44E-03
73	GO:0005249: voltage-gated potassium channel activity	1.56E-03
74	GO:0030551: cyclic nucleotide binding	1.56E-03
75	GO:0010181: FMN binding	1.81E-03
76	GO:0016853: isomerase activity	1.81E-03
77	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.83E-03
78	GO:0030151: molybdenum ion binding	1.83E-03
79	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.26E-03
80	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.26E-03
81	GO:0016615: malate dehydrogenase activity	2.26E-03
82	GO:0005247: voltage-gated chloride channel activity	2.26E-03
83	GO:0080030: methyl indole-3-acetate esterase activity	2.26E-03
84	GO:0016161: beta-amylase activity	2.71E-03
85	GO:0030060: L-malate dehydrogenase activity	2.71E-03
86	GO:0015140: malate transmembrane transporter activity	3.20E-03
87	GO:0008235: metalloexopeptidase activity	3.20E-03
88	GO:0016621: cinnamoyl-CoA reductase activity	3.20E-03
89	GO:0009881: photoreceptor activity	3.20E-03
90	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.71E-03
91	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.71E-03
92	GO:0004034: aldose 1-epimerase activity	3.71E-03
93	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.14E-03
94	GO:0016844: strictosidine synthase activity	5.38E-03
95	GO:0015174: basic amino acid transmembrane transporter activity	5.38E-03
96	GO:0004364: glutathione transferase activity	6.08E-03
97	GO:0004177: aminopeptidase activity	6.62E-03
98	GO:0008559: xenobiotic-transporting ATPase activity	6.62E-03
99	GO:0008378: galactosyltransferase activity	7.28E-03
100	GO:0004022: alcohol dehydrogenase (NAD) activity	7.96E-03
101	GO:0008061: chitin binding	9.37E-03
102	GO:0008324: cation transmembrane transporter activity	1.17E-02
103	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.25E-02
104	GO:0015035: protein disulfide oxidoreductase activity	1.25E-02
105	GO:0004540: ribonuclease activity	1.25E-02
106	GO:0022891: substrate-specific transmembrane transporter activity	1.41E-02
107	GO:0003756: protein disulfide isomerase activity	1.50E-02
108	GO:0050662: coenzyme binding	1.86E-02
109	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.06E-02
110	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
111	GO:0008483: transaminase activity	2.46E-02
112	GO:0003824: catalytic activity	2.53E-02
113	GO:0016413: O-acetyltransferase activity	2.57E-02
114	GO:0042802: identical protein binding	2.68E-02
115	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.00E-02
116	GO:0000287: magnesium ion binding	3.21E-02
117	GO:0030145: manganese ion binding	3.58E-02
118	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.82E-02
119	GO:0004672: protein kinase activity	3.87E-02
120	GO:0008422: beta-glucosidase activity	4.07E-02
121	GO:0052689: carboxylic ester hydrolase activity	4.46E-02
122	GO:0051537: 2 iron, 2 sulfur cluster binding	4.84E-02
123	GO:0005516: calmodulin binding	4.85E-02
124	GO:0015293: symporter activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0005764: lysosome	5.78E-07
3	GO:0005773: vacuole	9.60E-07
4	GO:0009507: chloroplast	4.77E-04
5	GO:0005615: extracellular space	7.83E-04
6	GO:0009526: plastid envelope	1.44E-03
7	GO:0031372: UBC13-MMS2 complex	1.44E-03
8	GO:0005747: mitochondrial respiratory chain complex I	1.56E-03
9	GO:0005746: mitochondrial respiratory chain	1.83E-03
10	GO:0031463: Cul3-RING ubiquitin ligase complex	2.26E-03
11	GO:0034707: chloride channel complex	2.26E-03
12	GO:0005777: peroxisome	2.40E-03
13	GO:0009840: chloroplastic endopeptidase Clp complex	2.71E-03
14	GO:0031359: integral component of chloroplast outer membrane	3.20E-03
15	GO:0005779: integral component of peroxisomal membrane	4.24E-03
16	GO:0005884: actin filament	6.62E-03
17	GO:0005765: lysosomal membrane	6.62E-03
18	GO:0005750: mitochondrial respiratory chain complex III	8.66E-03
19	GO:0030659: cytoplasmic vesicle membrane	8.66E-03
20	GO:0031969: chloroplast membrane	8.69E-03
21	GO:0009505: plant-type cell wall	9.59E-03
22	GO:0005758: mitochondrial intermembrane space	1.09E-02
23	GO:0009570: chloroplast stroma	1.17E-02
24	GO:0009706: chloroplast inner membrane	1.22E-02
25	GO:0009532: plastid stroma	1.25E-02
26	GO:0005783: endoplasmic reticulum	1.35E-02
27	GO:0005829: cytosol	1.48E-02
28	GO:0005759: mitochondrial matrix	1.92E-02
29	GO:0016020: membrane	1.99E-02
30	GO:0005887: integral component of plasma membrane	2.10E-02
31	GO:0005778: peroxisomal membrane	2.46E-02
32	GO:0009536: plastid	2.98E-02
33	GO:0009707: chloroplast outer membrane	3.23E-02
34	GO:0000325: plant-type vacuole	3.58E-02