Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G29170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042908: xenobiotic transport0.00E+00
2GO:0009856: pollination0.00E+00
3GO:0018293: protein-FAD linkage0.00E+00
4GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
5GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
6GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0055114: oxidation-reduction process2.64E-07
9GO:0010017: red or far-red light signaling pathway3.83E-05
10GO:0010189: vitamin E biosynthetic process6.14E-05
11GO:0051603: proteolysis involved in cellular protein catabolic process7.13E-05
12GO:0050790: regulation of catalytic activity8.22E-05
13GO:0006148: inosine catabolic process1.50E-04
14GO:0006835: dicarboxylic acid transport1.50E-04
15GO:0000305: response to oxygen radical1.50E-04
16GO:0031539: positive regulation of anthocyanin metabolic process1.50E-04
17GO:0009700: indole phytoalexin biosynthetic process1.50E-04
18GO:1903409: reactive oxygen species biosynthetic process1.50E-04
19GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport1.50E-04
20GO:0006750: glutathione biosynthetic process1.50E-04
21GO:0045454: cell redox homeostasis1.97E-04
22GO:0009627: systemic acquired resistance1.98E-04
23GO:0002213: defense response to insect3.11E-04
24GO:0007623: circadian rhythm3.19E-04
25GO:0051592: response to calcium ion3.42E-04
26GO:0080183: response to photooxidative stress3.42E-04
27GO:0043100: pyrimidine nucleobase salvage3.42E-04
28GO:0042754: negative regulation of circadian rhythm3.42E-04
29GO:0009915: phloem sucrose loading3.42E-04
30GO:0097054: L-glutamate biosynthetic process3.42E-04
31GO:0006099: tricarboxylic acid cycle3.58E-04
32GO:0009640: photomorphogenesis4.69E-04
33GO:0045493: xylan catabolic process5.61E-04
34GO:0010351: lithium ion transport5.61E-04
35GO:0052324: plant-type cell wall cellulose biosynthetic process5.61E-04
36GO:0019419: sulfate reduction5.61E-04
37GO:0071230: cellular response to amino acid stimulus5.61E-04
38GO:1901562: response to paraquat5.61E-04
39GO:0044375: regulation of peroxisome size5.61E-04
40GO:0006874: cellular calcium ion homeostasis6.09E-04
41GO:0009651: response to salt stress7.83E-04
42GO:0009723: response to ethylene7.87E-04
43GO:1902476: chloride transmembrane transport8.03E-04
44GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity8.03E-04
45GO:0006537: glutamate biosynthetic process8.03E-04
46GO:0009963: positive regulation of flavonoid biosynthetic process8.03E-04
47GO:0015700: arsenite transport8.03E-04
48GO:0006882: cellular zinc ion homeostasis8.03E-04
49GO:0080167: response to karrikin8.72E-04
50GO:0044550: secondary metabolite biosynthetic process9.88E-04
51GO:0042391: regulation of membrane potential9.99E-04
52GO:0080022: primary root development9.99E-04
53GO:0006646: phosphatidylethanolamine biosynthetic process1.06E-03
54GO:0019676: ammonia assimilation cycle1.06E-03
55GO:0015743: malate transport1.06E-03
56GO:0010600: regulation of auxin biosynthetic process1.06E-03
57GO:0015846: polyamine transport1.06E-03
58GO:0006749: glutathione metabolic process1.06E-03
59GO:0032366: intracellular sterol transport1.06E-03
60GO:0009902: chloroplast relocation1.06E-03
61GO:0009694: jasmonic acid metabolic process1.06E-03
62GO:0006814: sodium ion transport1.15E-03
63GO:0009696: salicylic acid metabolic process1.35E-03
64GO:0010236: plastoquinone biosynthetic process1.35E-03
65GO:0006121: mitochondrial electron transport, succinate to ubiquinone1.65E-03
66GO:0006555: methionine metabolic process1.65E-03
67GO:0048317: seed morphogenesis1.65E-03
68GO:0003006: developmental process involved in reproduction1.65E-03
69GO:0046686: response to cadmium ion1.72E-03
70GO:0009753: response to jasmonic acid1.74E-03
71GO:0019509: L-methionine salvage from methylthioadenosine1.98E-03
72GO:1901001: negative regulation of response to salt stress1.98E-03
73GO:0080060: integument development1.98E-03
74GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.33E-03
75GO:0045995: regulation of embryonic development2.33E-03
76GO:0080027: response to herbivore2.33E-03
77GO:0006955: immune response2.33E-03
78GO:0019745: pentacyclic triterpenoid biosynthetic process2.33E-03
79GO:0006821: chloride transport2.33E-03
80GO:0030026: cellular manganese ion homeostasis2.33E-03
81GO:0009739: response to gibberellin2.42E-03
82GO:0009817: defense response to fungus, incompatible interaction2.45E-03
83GO:0048658: anther wall tapetum development2.70E-03
84GO:0031540: regulation of anthocyanin biosynthetic process2.70E-03
85GO:0006102: isocitrate metabolic process2.70E-03
86GO:0016559: peroxisome fission2.70E-03
87GO:0009787: regulation of abscisic acid-activated signaling pathway2.70E-03
88GO:0030091: protein repair2.70E-03
89GO:0007568: aging2.82E-03
90GO:0010099: regulation of photomorphogenesis3.08E-03
91GO:0015996: chlorophyll catabolic process3.08E-03
92GO:0048574: long-day photoperiodism, flowering3.08E-03
93GO:0010100: negative regulation of photomorphogenesis3.08E-03
94GO:0046685: response to arsenic-containing substance3.49E-03
95GO:0080144: amino acid homeostasis3.49E-03
96GO:0051453: regulation of intracellular pH3.91E-03
97GO:0048354: mucilage biosynthetic process involved in seed coat development3.91E-03
98GO:0045036: protein targeting to chloroplast4.35E-03
99GO:0010215: cellulose microfibril organization4.35E-03
100GO:0055062: phosphate ion homeostasis4.35E-03
101GO:0000103: sulfate assimilation4.35E-03
102GO:0006855: drug transmembrane transport4.64E-03
103GO:0009684: indoleacetic acid biosynthetic process4.80E-03
104GO:0006816: calcium ion transport4.80E-03
105GO:0052544: defense response by callose deposition in cell wall4.80E-03
106GO:0000272: polysaccharide catabolic process4.80E-03
107GO:0046274: lignin catabolic process5.75E-03
108GO:0009785: blue light signaling pathway5.75E-03
109GO:0006108: malate metabolic process5.75E-03
110GO:0006006: glucose metabolic process5.75E-03
111GO:0009909: regulation of flower development5.92E-03
112GO:0009266: response to temperature stimulus6.25E-03
113GO:0048316: seed development6.53E-03
114GO:0006508: proteolysis6.54E-03
115GO:0007031: peroxisome organization6.77E-03
116GO:0042343: indole glucosinolate metabolic process6.77E-03
117GO:0010039: response to iron ion6.77E-03
118GO:0034976: response to endoplasmic reticulum stress7.30E-03
119GO:0042753: positive regulation of circadian rhythm7.30E-03
120GO:0006636: unsaturated fatty acid biosynthetic process7.30E-03
121GO:0009751: response to salicylic acid7.72E-03
122GO:0019344: cysteine biosynthetic process7.84E-03
123GO:0051017: actin filament bundle assembly7.84E-03
124GO:0008299: isoprenoid biosynthetic process8.40E-03
125GO:0098542: defense response to other organism8.97E-03
126GO:0019748: secondary metabolic process9.56E-03
127GO:0016226: iron-sulfur cluster assembly9.56E-03
128GO:0010214: seed coat development1.08E-02
129GO:0048653: anther development1.20E-02
130GO:0009958: positive gravitropism1.27E-02
131GO:0042752: regulation of circadian rhythm1.34E-02
132GO:0055072: iron ion homeostasis1.41E-02
133GO:0009851: auxin biosynthetic process1.41E-02
134GO:0008654: phospholipid biosynthetic process1.41E-02
135GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.47E-02
136GO:0010193: response to ozone1.47E-02
137GO:0009630: gravitropism1.55E-02
138GO:0019761: glucosinolate biosynthetic process1.55E-02
139GO:0009617: response to bacterium1.58E-02
140GO:0006464: cellular protein modification process1.69E-02
141GO:0009615: response to virus1.92E-02
142GO:0009816: defense response to bacterium, incompatible interaction1.99E-02
143GO:0055085: transmembrane transport2.20E-02
144GO:0016049: cell growth2.23E-02
145GO:0009832: plant-type cell wall biogenesis2.40E-02
146GO:0009407: toxin catabolic process2.48E-02
147GO:0006811: ion transport2.48E-02
148GO:0010218: response to far red light2.48E-02
149GO:0045087: innate immune response2.74E-02
150GO:0010114: response to red light3.28E-02
151GO:0009737: response to abscisic acid3.35E-02
152GO:0009636: response to toxic substance3.56E-02
153GO:0031347: regulation of defense response3.76E-02
154GO:0009664: plant-type cell wall organization3.85E-02
155GO:0042538: hyperosmotic salinity response3.85E-02
156GO:0006812: cation transport3.85E-02
157GO:0042742: defense response to bacterium3.93E-02
158GO:0009585: red, far-red light phototransduction4.05E-02
159GO:0008152: metabolic process4.12E-02
160GO:0010224: response to UV-B4.15E-02
161GO:0006857: oligopeptide transport4.26E-02
162GO:0009733: response to auxin4.53E-02
163GO:0006096: glycolytic process4.56E-02
164GO:0009626: plant-type hypersensitive response4.78E-02
165GO:0009620: response to fungus4.88E-02
166GO:0009740: gibberellic acid mediated signaling pathway4.99E-02
RankGO TermAdjusted P value
1GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
2GO:0050342: tocopherol O-methyltransferase activity0.00E+00
3GO:0000250: lanosterol synthase activity0.00E+00
4GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
5GO:0004357: glutamate-cysteine ligase activity0.00E+00
6GO:0015205: nucleobase transmembrane transporter activity0.00E+00
7GO:0015930: glutamate synthase activity0.00E+00
8GO:0017153: sodium:dicarboxylate symporter activity0.00E+00
9GO:0010176: homogentisate phytyltransferase activity0.00E+00
10GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
11GO:0004362: glutathione-disulfide reductase activity1.11E-06
12GO:0004197: cysteine-type endopeptidase activity4.11E-06
13GO:0008106: alcohol dehydrogenase (NADP+) activity9.63E-06
14GO:0080032: methyl jasmonate esterase activity1.80E-05
15GO:0004301: epoxide hydrolase activity1.80E-05
16GO:0080030: methyl indole-3-acetate esterase activity4.37E-05
17GO:0005261: cation channel activity6.14E-05
18GO:0008234: cysteine-type peptidase activity8.08E-05
19GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity1.50E-04
20GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.50E-04
21GO:0016776: phosphotransferase activity, phosphate group as acceptor1.50E-04
22GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity1.50E-04
23GO:0001530: lipopolysaccharide binding1.50E-04
24GO:0016780: phosphotransferase activity, for other substituted phosphate groups1.50E-04
25GO:0008066: glutamate receptor activity1.50E-04
26GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.50E-04
27GO:0045437: uridine nucleosidase activity1.50E-04
28GO:0009671: nitrate:proton symporter activity1.50E-04
29GO:0071992: phytochelatin transmembrane transporter activity1.50E-04
30GO:0004307: ethanolaminephosphotransferase activity1.50E-04
31GO:0016041: glutamate synthase (ferredoxin) activity1.50E-04
32GO:0016491: oxidoreductase activity3.14E-04
33GO:0004566: beta-glucuronidase activity3.42E-04
34GO:0015179: L-amino acid transmembrane transporter activity3.42E-04
35GO:0033741: adenylyl-sulfate reductase (glutathione) activity3.42E-04
36GO:0047724: inosine nucleosidase activity3.42E-04
37GO:0050347: trans-octaprenyltranstransferase activity3.42E-04
38GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity3.42E-04
39GO:0009973: adenylyl-sulfate reductase activity3.42E-04
40GO:0030572: phosphatidyltransferase activity3.42E-04
41GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity3.42E-04
42GO:0004142: diacylglycerol cholinephosphotransferase activity3.42E-04
43GO:0004450: isocitrate dehydrogenase (NADP+) activity3.42E-04
44GO:0051980: iron-nicotianamine transmembrane transporter activity3.42E-04
45GO:0080109: indole-3-acetonitrile nitrile hydratase activity3.42E-04
46GO:0030552: cAMP binding4.48E-04
47GO:0030553: cGMP binding4.48E-04
48GO:0052692: raffinose alpha-galactosidase activity5.61E-04
49GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity5.61E-04
50GO:0010277: chlorophyllide a oxygenase [overall] activity5.61E-04
51GO:0004557: alpha-galactosidase activity5.61E-04
52GO:0080061: indole-3-acetonitrile nitrilase activity5.61E-04
53GO:0016805: dipeptidase activity5.61E-04
54GO:0005216: ion channel activity6.09E-04
55GO:0080031: methyl salicylate esterase activity8.03E-04
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity8.03E-04
57GO:0000257: nitrilase activity8.03E-04
58GO:0015203: polyamine transmembrane transporter activity8.03E-04
59GO:0005249: voltage-gated potassium channel activity9.99E-04
60GO:0030551: cyclic nucleotide binding9.99E-04
61GO:0004659: prenyltransferase activity1.06E-03
62GO:0015368: calcium:cation antiporter activity1.06E-03
63GO:0015369: calcium:proton antiporter activity1.06E-03
64GO:0009044: xylan 1,4-beta-xylosidase activity1.06E-03
65GO:0005253: anion channel activity1.06E-03
66GO:0016866: intramolecular transferase activity1.06E-03
67GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.28E-03
68GO:0008177: succinate dehydrogenase (ubiquinone) activity1.35E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding1.35E-03
70GO:0016615: malate dehydrogenase activity1.65E-03
71GO:0005247: voltage-gated chloride channel activity1.65E-03
72GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity1.65E-03
73GO:0016161: beta-amylase activity1.98E-03
74GO:0030060: L-malate dehydrogenase activity1.98E-03
75GO:0008235: metalloexopeptidase activity2.33E-03
76GO:0015140: malate transmembrane transporter activity2.33E-03
77GO:0004869: cysteine-type endopeptidase inhibitor activity2.70E-03
78GO:0015491: cation:cation antiporter activity2.70E-03
79GO:0005506: iron ion binding2.76E-03
80GO:0000989: transcription factor activity, transcription factor binding3.49E-03
81GO:0050661: NADP binding3.52E-03
82GO:0016788: hydrolase activity, acting on ester bonds3.74E-03
83GO:0015174: basic amino acid transmembrane transporter activity3.91E-03
84GO:0004177: aminopeptidase activity4.80E-03
85GO:0008559: xenobiotic-transporting ATPase activity4.80E-03
86GO:0051287: NAD binding4.81E-03
87GO:0015198: oligopeptide transporter activity5.27E-03
88GO:0052716: hydroquinone:oxygen oxidoreductase activity5.27E-03
89GO:0005262: calcium channel activity5.75E-03
90GO:0004022: alcohol dehydrogenase (NAD) activity5.75E-03
91GO:0020037: heme binding6.31E-03
92GO:0019825: oxygen binding6.39E-03
93GO:0005507: copper ion binding6.39E-03
94GO:0008061: chitin binding6.77E-03
95GO:0004970: ionotropic glutamate receptor activity6.77E-03
96GO:0005217: intracellular ligand-gated ion channel activity6.77E-03
97GO:0015035: protein disulfide oxidoreductase activity7.84E-03
98GO:0008324: cation transmembrane transporter activity8.40E-03
99GO:0009055: electron carrier activity8.60E-03
100GO:0035251: UDP-glucosyltransferase activity8.97E-03
101GO:0004540: ribonuclease activity8.97E-03
102GO:0016787: hydrolase activity1.07E-02
103GO:0003756: protein disulfide isomerase activity1.08E-02
104GO:0015297: antiporter activity1.26E-02
105GO:0004527: exonuclease activity1.27E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.62E-02
107GO:0042802: identical protein binding1.68E-02
108GO:0016722: oxidoreductase activity, oxidizing metal ions1.76E-02
109GO:0016798: hydrolase activity, acting on glycosyl bonds2.15E-02
110GO:0008236: serine-type peptidase activity2.23E-02
111GO:0015238: drug transmembrane transporter activity2.40E-02
112GO:0030145: manganese ion binding2.56E-02
113GO:0005516: calmodulin binding2.72E-02
114GO:0004364: glutathione transferase activity3.19E-02
115GO:0004185: serine-type carboxypeptidase activity3.28E-02
116GO:0051537: 2 iron, 2 sulfur cluster binding3.47E-02
117GO:0015293: symporter activity3.56E-02
118GO:0044212: transcription regulatory region DNA binding3.93E-02
119GO:0016298: lipase activity4.15E-02
120GO:0003690: double-stranded DNA binding4.15E-02
121GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.67E-02
122GO:0022857: transmembrane transporter activity4.99E-02
RankGO TermAdjusted P value
1GO:0005764: lysosome2.02E-07
2GO:0005773: vacuole3.38E-07
3GO:0005615: extracellular space4.27E-05
4GO:0005578: proteinaceous extracellular matrix3.54E-04
5GO:0005829: cytosol5.46E-04
6GO:0009526: plastid envelope1.06E-03
7GO:0034707: chloride channel complex1.65E-03
8GO:0031463: Cul3-RING ubiquitin ligase complex1.65E-03
9GO:0048046: apoplast2.98E-03
10GO:0005779: integral component of peroxisomal membrane3.08E-03
11GO:0005765: lysosomal membrane4.80E-03
12GO:0005884: actin filament4.80E-03
13GO:0031012: extracellular matrix5.75E-03
14GO:0005774: vacuolar membrane8.26E-03
15GO:0005576: extracellular region1.11E-02
16GO:0005887: integral component of plasma membrane1.16E-02
17GO:0005759: mitochondrial matrix1.20E-02
18GO:0009705: plant-type vacuole membrane1.32E-02
19GO:0009536: plastid1.48E-02
20GO:0009505: plant-type cell wall1.53E-02
21GO:0046658: anchored component of plasma membrane1.75E-02
22GO:0005778: peroxisomal membrane1.76E-02
23GO:0031969: chloroplast membrane2.54E-02
24GO:0000325: plant-type vacuole2.56E-02
25GO:0009570: chloroplast stroma2.79E-02
26GO:0031225: anchored component of membrane2.85E-02
27GO:0016020: membrane3.17E-02
28GO:0005886: plasma membrane4.28E-02
29GO:0005747: mitochondrial respiratory chain complex I4.67E-02
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Gene type



Gene DE type