co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0015882: L-ascorbic acid transport	0.00E+00
5	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0044249: cellular biosynthetic process	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:0008298: intracellular mRNA localization	0.00E+00
10	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
11	GO:0042493: response to drug	0.00E+00
12	GO:0015979: photosynthesis	7.38E-10
13	GO:0018298: protein-chromophore linkage	1.38E-07
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.35E-06
15	GO:0005977: glycogen metabolic process	1.21E-05
16	GO:0009765: photosynthesis, light harvesting	4.90E-05
17	GO:0010021: amylopectin biosynthetic process	4.90E-05
18	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-04
19	GO:0009637: response to blue light	1.11E-04
20	GO:0010114: response to red light	1.74E-04
21	GO:0048564: photosystem I assembly	2.58E-04
22	GO:0010028: xanthophyll cycle	2.70E-04
23	GO:0034337: RNA folding	2.70E-04
24	GO:0010362: negative regulation of anion channel activity by blue light	2.70E-04
25	GO:0071277: cellular response to calcium ion	2.70E-04
26	GO:0000481: maturation of 5S rRNA	2.70E-04
27	GO:0042371: vitamin K biosynthetic process	2.70E-04
28	GO:0055114: oxidation-reduction process	3.06E-04
29	GO:0010206: photosystem II repair	3.84E-04
30	GO:0009638: phototropism	4.56E-04
31	GO:0010155: regulation of proton transport	5.94E-04
32	GO:0006435: threonyl-tRNA aminoacylation	5.94E-04
33	GO:0019752: carboxylic acid metabolic process	5.94E-04
34	GO:0030187: melatonin biosynthetic process	5.94E-04
35	GO:0009773: photosynthetic electron transport in photosystem I	6.14E-04
36	GO:0015995: chlorophyll biosynthetic process	6.33E-04
37	GO:0016311: dephosphorylation	6.76E-04
38	GO:0006006: glucose metabolic process	7.96E-04
39	GO:0010218: response to far red light	8.15E-04
40	GO:0019253: reductive pentose-phosphate cycle	8.95E-04
41	GO:0009405: pathogenesis	9.62E-04
42	GO:0090391: granum assembly	9.62E-04
43	GO:0009744: response to sucrose	1.33E-03
44	GO:0006020: inositol metabolic process	1.38E-03
45	GO:0071484: cellular response to light intensity	1.38E-03
46	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.38E-03
47	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.38E-03
48	GO:0009650: UV protection	1.38E-03
49	GO:0046739: transport of virus in multicellular host	1.38E-03
50	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.38E-03
51	GO:0009625: response to insect	1.76E-03
52	GO:0006021: inositol biosynthetic process	1.84E-03
53	GO:0009755: hormone-mediated signaling pathway	1.84E-03
54	GO:0010438: cellular response to sulfur starvation	2.35E-03
55	GO:0009616: virus induced gene silencing	2.35E-03
56	GO:0006656: phosphatidylcholine biosynthetic process	2.35E-03
57	GO:0016558: protein import into peroxisome matrix	2.35E-03
58	GO:0006564: L-serine biosynthetic process	2.35E-03
59	GO:0009904: chloroplast accumulation movement	2.35E-03
60	GO:0019252: starch biosynthetic process	2.79E-03
61	GO:0035194: posttranscriptional gene silencing by RNA	2.90E-03
62	GO:0046855: inositol phosphate dephosphorylation	2.90E-03
63	GO:0010190: cytochrome b6f complex assembly	2.90E-03
64	GO:0009643: photosynthetic acclimation	2.90E-03
65	GO:0080167: response to karrikin	3.10E-03
66	GO:0019761: glucosinolate biosynthetic process	3.18E-03
67	GO:0071470: cellular response to osmotic stress	3.49E-03
68	GO:0019509: L-methionine salvage from methylthioadenosine	3.49E-03
69	GO:0031930: mitochondria-nucleus signaling pathway	3.49E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.49E-03
71	GO:0009903: chloroplast avoidance movement	3.49E-03
72	GO:0010189: vitamin E biosynthetic process	3.49E-03
73	GO:0009416: response to light stimulus	3.62E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	4.12E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	4.12E-03
76	GO:0009645: response to low light intensity stimulus	4.12E-03
77	GO:0016559: peroxisome fission	4.77E-03
78	GO:0009819: drought recovery	4.77E-03
79	GO:0009642: response to light intensity	4.77E-03
80	GO:0010439: regulation of glucosinolate biosynthetic process	4.77E-03
81	GO:0006605: protein targeting	4.77E-03
82	GO:0009704: de-etiolation	4.77E-03
83	GO:0032508: DNA duplex unwinding	4.77E-03
84	GO:2000070: regulation of response to water deprivation	4.77E-03
85	GO:0009231: riboflavin biosynthetic process	4.77E-03
86	GO:0009657: plastid organization	5.47E-03
87	GO:0017004: cytochrome complex assembly	5.47E-03
88	GO:0098656: anion transmembrane transport	6.20E-03
89	GO:0009821: alkaloid biosynthetic process	6.20E-03
90	GO:0090333: regulation of stomatal closure	6.20E-03
91	GO:0000373: Group II intron splicing	6.20E-03
92	GO:0009098: leucine biosynthetic process	6.96E-03
93	GO:0009867: jasmonic acid mediated signaling pathway	7.11E-03
94	GO:0006896: Golgi to vacuole transport	7.75E-03
95	GO:0009682: induced systemic resistance	8.58E-03
96	GO:0009750: response to fructose	8.58E-03
97	GO:0018119: peptidyl-cysteine S-nitrosylation	8.58E-03
98	GO:0005975: carbohydrate metabolic process	8.63E-03
99	GO:0006790: sulfur compound metabolic process	9.44E-03
100	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.44E-03
101	GO:0009644: response to high light intensity	9.94E-03
102	GO:0009725: response to hormone	1.03E-02
103	GO:0009767: photosynthetic electron transport chain	1.03E-02
104	GO:0009785: blue light signaling pathway	1.03E-02
105	GO:0010628: positive regulation of gene expression	1.03E-02
106	GO:0009658: chloroplast organization	1.06E-02
107	GO:0010020: chloroplast fission	1.12E-02
108	GO:0010207: photosystem II assembly	1.12E-02
109	GO:0019853: L-ascorbic acid biosynthetic process	1.22E-02
110	GO:0071732: cellular response to nitric oxide	1.22E-02
111	GO:0046854: phosphatidylinositol phosphorylation	1.22E-02
112	GO:0006833: water transport	1.32E-02
113	GO:0006863: purine nucleobase transport	1.32E-02
114	GO:0009863: salicylic acid mediated signaling pathway	1.42E-02
115	GO:0080147: root hair cell development	1.42E-02
116	GO:0006096: glycolytic process	1.47E-02
117	GO:0007017: microtubule-based process	1.52E-02
118	GO:0009695: jasmonic acid biosynthetic process	1.52E-02
119	GO:0048511: rhythmic process	1.62E-02
120	GO:0009269: response to desiccation	1.62E-02
121	GO:0080092: regulation of pollen tube growth	1.73E-02
122	GO:0006012: galactose metabolic process	1.84E-02
123	GO:0009411: response to UV	1.84E-02
124	GO:0071369: cellular response to ethylene stimulus	1.84E-02
125	GO:0006284: base-excision repair	1.95E-02
126	GO:0009306: protein secretion	1.95E-02
127	GO:0042147: retrograde transport, endosome to Golgi	2.07E-02
128	GO:0034220: ion transmembrane transport	2.19E-02
129	GO:0048868: pollen tube development	2.31E-02
130	GO:0042752: regulation of circadian rhythm	2.43E-02
131	GO:0015986: ATP synthesis coupled proton transport	2.43E-02
132	GO:0006623: protein targeting to vacuole	2.55E-02
133	GO:0009791: post-embryonic development	2.55E-02
134	GO:0009749: response to glucose	2.55E-02
135	GO:0008654: phospholipid biosynthetic process	2.55E-02
136	GO:0010193: response to ozone	2.68E-02
137	GO:0006891: intra-Golgi vesicle-mediated transport	2.68E-02
138	GO:0006635: fatty acid beta-oxidation	2.68E-02
139	GO:0016032: viral process	2.81E-02
140	GO:0006413: translational initiation	2.85E-02
141	GO:0071281: cellular response to iron ion	2.94E-02
142	GO:0007623: circadian rhythm	3.06E-02
143	GO:0009451: RNA modification	3.13E-02
144	GO:0009739: response to gibberellin	3.42E-02
145	GO:0010027: thylakoid membrane organization	3.48E-02
146	GO:0009627: systemic acquired resistance	3.77E-02
147	GO:0006888: ER to Golgi vesicle-mediated transport	3.91E-02
148	GO:0010411: xyloglucan metabolic process	3.91E-02
149	GO:0009735: response to cytokinin	4.16E-02
150	GO:0009817: defense response to fungus, incompatible interaction	4.21E-02
151	GO:0000160: phosphorelay signal transduction system	4.36E-02
152	GO:0009407: toxin catabolic process	4.51E-02
153	GO:0006811: ion transport	4.51E-02
154	GO:0010119: regulation of stomatal movement	4.66E-02
155	GO:0009853: photorespiration	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
8	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
9	GO:0042623: ATPase activity, coupled	0.00E+00
10	GO:0010276: phytol kinase activity	0.00E+00
11	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
12	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
13	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
14	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
15	GO:0016168: chlorophyll binding	2.24E-06
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.35E-06
17	GO:0019156: isoamylase activity	3.35E-06
18	GO:0043495: protein anchor	4.90E-05
19	GO:0031409: pigment binding	7.44E-05
20	GO:0004556: alpha-amylase activity	1.13E-04
21	GO:0004462: lactoylglutathione lyase activity	1.13E-04
22	GO:0019899: enzyme binding	2.04E-04
23	GO:0004451: isocitrate lyase activity	2.70E-04
24	GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity	2.70E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	5.94E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	5.94E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	5.94E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	5.94E-04
29	GO:0016630: protochlorophyllide reductase activity	5.94E-04
30	GO:0004829: threonine-tRNA ligase activity	5.94E-04
31	GO:0019172: glyoxalase III activity	5.94E-04
32	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.94E-04
33	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.94E-04
34	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.14E-04
35	GO:0016491: oxidoreductase activity	6.40E-04
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.62E-04
37	GO:0004148: dihydrolipoyl dehydrogenase activity	9.62E-04
38	GO:0046423: allene-oxide cyclase activity	9.62E-04
39	GO:0004751: ribose-5-phosphate isomerase activity	9.62E-04
40	GO:0003993: acid phosphatase activity	1.02E-03
41	GO:0009882: blue light photoreceptor activity	1.38E-03
42	GO:0042802: identical protein binding	1.65E-03
43	GO:0051287: NAD binding	1.69E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	1.76E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.84E-03
46	GO:0008453: alanine-glyoxylate transaminase activity	1.84E-03
47	GO:0080032: methyl jasmonate esterase activity	1.84E-03
48	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.84E-03
49	GO:0008725: DNA-3-methyladenine glycosylase activity	2.35E-03
50	GO:0003959: NADPH dehydrogenase activity	2.35E-03
51	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.35E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	2.90E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	2.90E-03
54	GO:0000293: ferric-chelate reductase activity	2.90E-03
55	GO:0042578: phosphoric ester hydrolase activity	2.90E-03
56	GO:0008195: phosphatidate phosphatase activity	3.49E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.49E-03
58	GO:0019843: rRNA binding	4.04E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	4.77E-03
60	GO:0008135: translation factor activity, RNA binding	5.47E-03
61	GO:0003724: RNA helicase activity	5.47E-03
62	GO:0016844: strictosidine synthase activity	6.96E-03
63	GO:0000155: phosphorelay sensor kinase activity	1.03E-02
64	GO:0008081: phosphoric diester hydrolase activity	1.03E-02
65	GO:0005315: inorganic phosphate transmembrane transporter activity	1.03E-02
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.07E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	1.09E-02
68	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.12E-02
69	GO:0005528: FK506 binding	1.42E-02
70	GO:0005345: purine nucleobase transmembrane transporter activity	1.52E-02
71	GO:0008514: organic anion transmembrane transporter activity	1.95E-02
72	GO:0003727: single-stranded RNA binding	1.95E-02
73	GO:0003924: GTPase activity	2.28E-02
74	GO:0008080: N-acetyltransferase activity	2.31E-02
75	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.31E-02
76	GO:0016853: isomerase activity	2.43E-02
77	GO:0010181: FMN binding	2.43E-02
78	GO:0004872: receptor activity	2.55E-02
79	GO:0048038: quinone binding	2.68E-02
80	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.68E-02
81	GO:0005525: GTP binding	2.81E-02
82	GO:0016597: amino acid binding	3.34E-02
83	GO:0015250: water channel activity	3.48E-02
84	GO:0003743: translation initiation factor activity	3.57E-02
85	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.91E-02
86	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02
87	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.21E-02
88	GO:0050897: cobalt ion binding	4.66E-02
89	GO:0003746: translation elongation factor activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0009507: chloroplast	1.85E-36
4	GO:0009535: chloroplast thylakoid membrane	6.84E-32
5	GO:0009941: chloroplast envelope	1.11E-13
6	GO:0009534: chloroplast thylakoid	4.05E-13
7	GO:0009579: thylakoid	1.07E-09
8	GO:0009543: chloroplast thylakoid lumen	1.28E-09
9	GO:0009570: chloroplast stroma	7.79E-09
10	GO:0010287: plastoglobule	2.38E-08
11	GO:0009523: photosystem II	5.79E-07
12	GO:0030095: chloroplast photosystem II	1.32E-06
13	GO:0009538: photosystem I reaction center	6.06E-06
14	GO:0009522: photosystem I	2.64E-04
15	GO:0031969: chloroplast membrane	6.69E-04
16	GO:0030076: light-harvesting complex	9.99E-04
17	GO:0031977: thylakoid lumen	1.20E-03
18	GO:0042651: thylakoid membrane	1.35E-03
19	GO:0030286: dynein complex	1.84E-03
20	GO:0009898: cytoplasmic side of plasma membrane	1.84E-03
21	GO:0009517: PSII associated light-harvesting complex II	1.84E-03
22	GO:0005851: eukaryotic translation initiation factor 2B complex	2.90E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.90E-03
24	GO:0009706: chloroplast inner membrane	3.03E-03
25	GO:0016020: membrane	3.45E-03
26	GO:0010319: stromule	3.83E-03
27	GO:0009986: cell surface	4.12E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	4.77E-03
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.20E-03
30	GO:0048046: apoplast	7.14E-03
31	GO:0016324: apical plasma membrane	7.75E-03
32	GO:0032040: small-subunit processome	9.44E-03
33	GO:0009508: plastid chromosome	1.03E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.52E-02
35	GO:0019898: extrinsic component of membrane	2.55E-02
36	GO:0009295: nucleoid	3.21E-02
37	GO:0005778: peroxisomal membrane	3.21E-02
38	GO:0009707: chloroplast outer membrane	4.21E-02
39	GO:0015934: large ribosomal subunit	4.66E-02