co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904526: regulation of microtubule binding	0.00E+00
2	GO:0009667: plastid inner membrane organization	0.00E+00
3	GO:0009631: cold acclimation	1.45E-11
4	GO:0009409: response to cold	4.21E-07
5	GO:0042335: cuticle development	3.13E-06
6	GO:0009737: response to abscisic acid	3.67E-06
7	GO:0009414: response to water deprivation	7.57E-06
8	GO:0070417: cellular response to cold	8.16E-05
9	GO:0042538: hyperosmotic salinity response	9.05E-05
10	GO:0009415: response to water	1.37E-04
11	GO:0000302: response to reactive oxygen species	1.40E-04
12	GO:0080051: cutin transport	1.77E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	1.77E-04
14	GO:0060627: regulation of vesicle-mediated transport	1.77E-04
15	GO:0009609: response to symbiotic bacterium	1.77E-04
16	GO:0000038: very long-chain fatty acid metabolic process	3.42E-04
17	GO:0006811: ion transport	3.83E-04
18	GO:0005983: starch catabolic process	3.93E-04
19	GO:0015786: UDP-glucose transport	4.01E-04
20	GO:0015709: thiosulfate transport	4.01E-04
21	GO:0071422: succinate transmembrane transport	4.01E-04
22	GO:0031407: oxylipin metabolic process	4.01E-04
23	GO:0015908: fatty acid transport	4.01E-04
24	GO:0050826: response to freezing	4.47E-04
25	GO:0010150: leaf senescence	4.65E-04
26	GO:0010025: wax biosynthetic process	6.28E-04
27	GO:0009062: fatty acid catabolic process	6.55E-04
28	GO:0015783: GDP-fucose transport	6.55E-04
29	GO:0051259: protein oligomerization	9.34E-04
30	GO:0010371: regulation of gibberellin biosynthetic process	9.34E-04
31	GO:1901000: regulation of response to salt stress	9.34E-04
32	GO:0015729: oxaloacetate transport	9.34E-04
33	GO:0072334: UDP-galactose transmembrane transport	9.34E-04
34	GO:0030100: regulation of endocytosis	9.34E-04
35	GO:0071585: detoxification of cadmium ion	1.24E-03
36	GO:0010222: stem vascular tissue pattern formation	1.24E-03
37	GO:0046345: abscisic acid catabolic process	1.24E-03
38	GO:0022622: root system development	1.24E-03
39	GO:0006552: leucine catabolic process	1.24E-03
40	GO:0042631: cellular response to water deprivation	1.25E-03
41	GO:0048868: pollen tube development	1.35E-03
42	GO:0006873: cellular ion homeostasis	1.57E-03
43	GO:0006461: protein complex assembly	1.57E-03
44	GO:0071423: malate transmembrane transport	1.57E-03
45	GO:0009823: cytokinin catabolic process	1.57E-03
46	GO:0006656: phosphatidylcholine biosynthetic process	1.57E-03
47	GO:0047484: regulation of response to osmotic stress	1.94E-03
48	GO:1900425: negative regulation of defense response to bacterium	1.94E-03
49	GO:0006574: valine catabolic process	1.94E-03
50	GO:0035435: phosphate ion transmembrane transport	1.94E-03
51	GO:0019760: glucosinolate metabolic process	2.00E-03
52	GO:0010286: heat acclimation	2.12E-03
53	GO:0045926: negative regulation of growth	2.32E-03
54	GO:0009082: branched-chain amino acid biosynthetic process	2.32E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.32E-03
56	GO:0010555: response to mannitol	2.32E-03
57	GO:0071470: cellular response to osmotic stress	2.32E-03
58	GO:0006974: cellular response to DNA damage stimulus	2.65E-03
59	GO:1902074: response to salt	2.74E-03
60	GO:0010103: stomatal complex morphogenesis	2.74E-03
61	GO:0032880: regulation of protein localization	2.74E-03
62	GO:0009610: response to symbiotic fungus	2.74E-03
63	GO:0030497: fatty acid elongation	2.74E-03
64	GO:0008272: sulfate transport	2.74E-03
65	GO:0007623: circadian rhythm	2.84E-03
66	GO:0009690: cytokinin metabolic process	3.17E-03
67	GO:0050821: protein stabilization	3.17E-03
68	GO:0000105: histidine biosynthetic process	3.17E-03
69	GO:0019827: stem cell population maintenance	3.17E-03
70	GO:0008610: lipid biosynthetic process	3.17E-03
71	GO:0035265: organ growth	3.17E-03
72	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.17E-03
73	GO:0009819: drought recovery	3.17E-03
74	GO:0051276: chromosome organization	3.17E-03
75	GO:0009873: ethylene-activated signaling pathway	3.31E-03
76	GO:0009651: response to salt stress	4.23E-03
77	GO:0042761: very long-chain fatty acid biosynthetic process	4.60E-03
78	GO:2000280: regulation of root development	4.60E-03
79	GO:0006631: fatty acid metabolic process	4.64E-03
80	GO:0009641: shade avoidance	5.11E-03
81	GO:0006970: response to osmotic stress	5.42E-03
82	GO:0009644: response to high light intensity	5.44E-03
83	GO:0016024: CDP-diacylglycerol biosynthetic process	6.20E-03
84	GO:0080167: response to karrikin	6.49E-03
85	GO:0010200: response to chitin	6.77E-03
86	GO:0010588: cotyledon vascular tissue pattern formation	6.78E-03
87	GO:2000012: regulation of auxin polar transport	6.78E-03
88	GO:0010143: cutin biosynthetic process	7.37E-03
89	GO:0043086: negative regulation of catalytic activity	8.02E-03
90	GO:0009833: plant-type primary cell wall biogenesis	8.61E-03
91	GO:0005975: carbohydrate metabolic process	8.94E-03
92	GO:0050832: defense response to fungus	9.79E-03
93	GO:0007017: microtubule-based process	9.92E-03
94	GO:0031408: oxylipin biosynthetic process	1.06E-02
95	GO:0016998: cell wall macromolecule catabolic process	1.06E-02
96	GO:0051260: protein homooligomerization	1.06E-02
97	GO:0009269: response to desiccation	1.06E-02
98	GO:0010017: red or far-red light signaling pathway	1.13E-02
99	GO:0001944: vasculature development	1.20E-02
100	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.20E-02
101	GO:0071215: cellular response to abscisic acid stimulus	1.20E-02
102	GO:0009058: biosynthetic process	1.28E-02
103	GO:0008284: positive regulation of cell proliferation	1.35E-02
104	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
105	GO:0000413: protein peptidyl-prolyl isomerization	1.43E-02
106	GO:0009958: positive gravitropism	1.50E-02
107	GO:0010268: brassinosteroid homeostasis	1.50E-02
108	GO:0006633: fatty acid biosynthetic process	1.52E-02
109	GO:0071555: cell wall organization	1.56E-02
110	GO:0019252: starch biosynthetic process	1.66E-02
111	GO:0045490: pectin catabolic process	1.68E-02
112	GO:0006635: fatty acid beta-oxidation	1.75E-02
113	GO:0016132: brassinosteroid biosynthetic process	1.75E-02
114	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.75E-02
115	GO:0010583: response to cyclopentenone	1.83E-02
116	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.88E-02
117	GO:0007166: cell surface receptor signaling pathway	1.92E-02
118	GO:0009735: response to cytokinin	1.97E-02
119	GO:0009639: response to red or far red light	2.00E-02
120	GO:0009828: plant-type cell wall loosening	2.00E-02
121	GO:0006310: DNA recombination	2.00E-02
122	GO:0016125: sterol metabolic process	2.00E-02
123	GO:0009416: response to light stimulus	2.20E-02
124	GO:0009611: response to wounding	2.26E-02
125	GO:0009911: positive regulation of flower development	2.27E-02
126	GO:0010411: xyloglucan metabolic process	2.55E-02
127	GO:0016049: cell growth	2.64E-02
128	GO:0000160: phosphorelay signal transduction system	2.84E-02
129	GO:0048527: lateral root development	3.04E-02
130	GO:0007568: aging	3.04E-02
131	GO:0000724: double-strand break repair via homologous recombination	3.14E-02
132	GO:0016051: carbohydrate biosynthetic process	3.24E-02
133	GO:0009637: response to blue light	3.24E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-02
135	GO:0034599: cellular response to oxidative stress	3.35E-02
136	GO:0006839: mitochondrial transport	3.56E-02
137	GO:0008283: cell proliferation	3.88E-02
138	GO:0042546: cell wall biogenesis	4.00E-02
139	GO:0000209: protein polyubiquitination	4.00E-02
140	GO:0006869: lipid transport	4.21E-02
141	GO:0006260: DNA replication	4.45E-02
142	GO:0009664: plant-type cell wall organization	4.56E-02
143	GO:0009751: response to salicylic acid	4.66E-02
144	GO:0009736: cytokinin-activated signaling pathway	4.80E-02
145	GO:0009809: lignin biosynthetic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0005534: galactose binding	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0009922: fatty acid elongase activity	3.89E-05
5	GO:0004556: alpha-amylase activity	5.77E-05
6	GO:0015245: fatty acid transporter activity	1.77E-04
7	GO:0003879: ATP phosphoribosyltransferase activity	1.77E-04
8	GO:0008809: carnitine racemase activity	1.77E-04
9	GO:0004105: choline-phosphate cytidylyltransferase activity	1.77E-04
10	GO:1901677: phosphate transmembrane transporter activity	4.01E-04
11	GO:0016629: 12-oxophytodienoate reductase activity	4.01E-04
12	GO:0015117: thiosulfate transmembrane transporter activity	4.01E-04
13	GO:0008083: growth factor activity	5.04E-04
14	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.28E-04
15	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.28E-04
16	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.28E-04
17	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	6.55E-04
18	GO:0005457: GDP-fucose transmembrane transporter activity	6.55E-04
19	GO:0070330: aromatase activity	6.55E-04
20	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.55E-04
21	GO:0015141: succinate transmembrane transporter activity	6.55E-04
22	GO:0015131: oxaloacetate transmembrane transporter activity	9.34E-04
23	GO:0003883: CTP synthase activity	9.34E-04
24	GO:0005460: UDP-glucose transmembrane transporter activity	9.34E-04
25	GO:0052656: L-isoleucine transaminase activity	9.34E-04
26	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.34E-04
27	GO:0052654: L-leucine transaminase activity	9.34E-04
28	GO:0052655: L-valine transaminase activity	9.34E-04
29	GO:0044212: transcription regulatory region DNA binding	1.15E-03
30	GO:0004084: branched-chain-amino-acid transaminase activity	1.24E-03
31	GO:0018685: alkane 1-monooxygenase activity	1.57E-03
32	GO:0005459: UDP-galactose transmembrane transporter activity	1.57E-03
33	GO:0019139: cytokinin dehydrogenase activity	1.57E-03
34	GO:0016688: L-ascorbate peroxidase activity	1.94E-03
35	GO:0009378: four-way junction helicase activity	1.94E-03
36	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.94E-03
37	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	1.94E-03
38	GO:0004130: cytochrome-c peroxidase activity	1.94E-03
39	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.94E-03
40	GO:0043138: 3'-5' DNA helicase activity	2.32E-03
41	GO:0046910: pectinesterase inhibitor activity	2.60E-03
42	GO:0004620: phospholipase activity	2.74E-03
43	GO:0015140: malate transmembrane transporter activity	2.74E-03
44	GO:0052747: sinapyl alcohol dehydrogenase activity	3.17E-03
45	GO:0016209: antioxidant activity	3.17E-03
46	GO:0008308: voltage-gated anion channel activity	3.63E-03
47	GO:0008289: lipid binding	3.71E-03
48	GO:0043565: sequence-specific DNA binding	3.80E-03
49	GO:0015020: glucuronosyltransferase activity	5.11E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.87E-03
51	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.20E-03
52	GO:0015116: sulfate transmembrane transporter activity	6.20E-03
53	GO:0061630: ubiquitin protein ligase activity	6.92E-03
54	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.37E-03
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.18E-03
56	GO:0043130: ubiquitin binding	9.26E-03
57	GO:0005528: FK506 binding	9.26E-03
58	GO:0016746: transferase activity, transferring acyl groups	9.95E-03
59	GO:0003924: GTPase activity	1.06E-02
60	GO:0030570: pectate lyase activity	1.20E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.56E-02
62	GO:0010181: FMN binding	1.58E-02
63	GO:0015297: antiporter activity	1.60E-02
64	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.75E-02
65	GO:0000156: phosphorelay response regulator activity	1.91E-02
66	GO:0016791: phosphatase activity	2.00E-02
67	GO:0005200: structural constituent of cytoskeleton	2.09E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.55E-02
70	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
71	GO:0003993: acid phosphatase activity	3.35E-02
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.57E-02
73	GO:0042803: protein homodimerization activity	4.03E-02
74	GO:0005525: GTP binding	4.08E-02
75	GO:0005198: structural molecule activity	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0031357: integral component of chloroplast inner membrane	1.52E-06
2	GO:0009897: external side of plasma membrane	6.55E-04
3	GO:0046658: anchored component of plasma membrane	7.14E-04
4	GO:0016020: membrane	1.02E-03
5	GO:0009534: chloroplast thylakoid	1.74E-03
6	GO:0009505: plant-type cell wall	1.80E-03
7	GO:0005798: Golgi-associated vesicle	1.94E-03
8	GO:0009941: chloroplast envelope	3.11E-03
9	GO:0045298: tubulin complex	4.10E-03
10	GO:0031977: thylakoid lumen	4.64E-03
11	GO:0005886: plasma membrane	5.71E-03
12	GO:0009570: chloroplast stroma	6.80E-03
13	GO:0009579: thylakoid	7.04E-03
14	GO:0005769: early endosome	8.61E-03
15	GO:0031225: anchored component of membrane	1.05E-02
16	GO:0009543: chloroplast thylakoid lumen	1.21E-02
17	GO:0005618: cell wall	1.70E-02
18	GO:0009535: chloroplast thylakoid membrane	1.75E-02
19	GO:0005694: chromosome	1.83E-02
20	GO:0005615: extracellular space	1.88E-02
21	GO:0005576: extracellular region	2.88E-02
22	GO:0005783: endoplasmic reticulum	4.85E-02