Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0090042: tubulin deacetylation0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0034337: RNA folding0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:1905421: regulation of plant organ morphogenesis0.00E+00
13GO:2000505: regulation of energy homeostasis0.00E+00
14GO:0002184: cytoplasmic translational termination0.00E+00
15GO:0030155: regulation of cell adhesion0.00E+00
16GO:0006000: fructose metabolic process1.73E-08
17GO:0009773: photosynthetic electron transport in photosystem I3.71E-07
18GO:0015979: photosynthesis1.30E-06
19GO:0006418: tRNA aminoacylation for protein translation2.58E-06
20GO:0018026: peptidyl-lysine monomethylation2.75E-06
21GO:0030388: fructose 1,6-bisphosphate metabolic process2.75E-06
22GO:0006002: fructose 6-phosphate metabolic process6.80E-06
23GO:0010206: photosystem II repair9.52E-06
24GO:0006109: regulation of carbohydrate metabolic process4.12E-05
25GO:0015994: chlorophyll metabolic process4.12E-05
26GO:0061077: chaperone-mediated protein folding9.43E-05
27GO:0010190: cytochrome b6f complex assembly9.62E-05
28GO:0016117: carotenoid biosynthetic process1.56E-04
29GO:0005980: glycogen catabolic process2.43E-04
30GO:0006438: valyl-tRNA aminoacylation2.43E-04
31GO:0000481: maturation of 5S rRNA2.43E-04
32GO:0080093: regulation of photorespiration2.43E-04
33GO:0043609: regulation of carbon utilization2.43E-04
34GO:0043007: maintenance of rDNA2.43E-04
35GO:0031998: regulation of fatty acid beta-oxidation2.43E-04
36GO:0010028: xanthophyll cycle2.43E-04
37GO:0000023: maltose metabolic process2.43E-04
38GO:0006431: methionyl-tRNA aminoacylation2.43E-04
39GO:0000025: maltose catabolic process2.43E-04
40GO:0009657: plastid organization2.74E-04
41GO:0032544: plastid translation2.74E-04
42GO:0009658: chloroplast organization3.46E-04
43GO:0005982: starch metabolic process3.94E-04
44GO:0010027: thylakoid membrane organization4.26E-04
45GO:0043085: positive regulation of catalytic activity5.33E-04
46GO:0016560: protein import into peroxisome matrix, docking5.39E-04
47GO:0005976: polysaccharide metabolic process5.39E-04
48GO:0097054: L-glutamate biosynthetic process5.39E-04
49GO:0031648: protein destabilization5.39E-04
50GO:0016122: xanthophyll metabolic process5.39E-04
51GO:0051262: protein tetramerization5.39E-04
52GO:0005983: starch catabolic process6.09E-04
53GO:0006094: gluconeogenesis6.91E-04
54GO:0005986: sucrose biosynthetic process6.91E-04
55GO:0009631: cold acclimation7.19E-04
56GO:0006518: peptide metabolic process8.75E-04
57GO:0016050: vesicle organization8.75E-04
58GO:0048281: inflorescence morphogenesis8.75E-04
59GO:0006537: glutamate biosynthetic process1.25E-03
60GO:0010148: transpiration1.25E-03
61GO:0006515: misfolded or incompletely synthesized protein catabolic process1.25E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.25E-03
63GO:0009409: response to cold1.58E-03
64GO:0015846: polyamine transport1.67E-03
65GO:0006552: leucine catabolic process1.67E-03
66GO:0010021: amylopectin biosynthetic process1.67E-03
67GO:0010106: cellular response to iron ion starvation1.67E-03
68GO:0006808: regulation of nitrogen utilization1.67E-03
69GO:0010109: regulation of photosynthesis1.67E-03
70GO:0019676: ammonia assimilation cycle1.67E-03
71GO:0051322: anaphase1.67E-03
72GO:0006662: glycerol ether metabolic process2.09E-03
73GO:0016120: carotene biosynthetic process2.13E-03
74GO:0032543: mitochondrial translation2.13E-03
75GO:0006097: glyoxylate cycle2.13E-03
76GO:0006461: protein complex assembly2.13E-03
77GO:0016123: xanthophyll biosynthetic process2.13E-03
78GO:0009646: response to absence of light2.24E-03
79GO:0019252: starch biosynthetic process2.40E-03
80GO:0009913: epidermal cell differentiation2.62E-03
81GO:0042793: transcription from plastid promoter2.62E-03
82GO:0000470: maturation of LSU-rRNA2.62E-03
83GO:0042026: protein refolding3.15E-03
84GO:1901259: chloroplast rRNA processing3.15E-03
85GO:0006458: 'de novo' protein folding3.15E-03
86GO:0030488: tRNA methylation3.15E-03
87GO:0045454: cell redox homeostasis3.25E-03
88GO:0010196: nonphotochemical quenching3.72E-03
89GO:0070370: cellular heat acclimation3.72E-03
90GO:0022904: respiratory electron transport chain3.72E-03
91GO:0010103: stomatal complex morphogenesis3.72E-03
92GO:0071446: cellular response to salicylic acid stimulus3.72E-03
93GO:0005978: glycogen biosynthetic process4.31E-03
94GO:0009642: response to light intensity4.31E-03
95GO:0006605: protein targeting4.31E-03
96GO:0032508: DNA duplex unwinding4.31E-03
97GO:0015995: chlorophyll biosynthetic process4.37E-03
98GO:0001558: regulation of cell growth4.93E-03
99GO:0017004: cytochrome complex assembly4.93E-03
100GO:2000031: regulation of salicylic acid mediated signaling pathway4.93E-03
101GO:0051865: protein autoubiquitination5.59E-03
102GO:0006783: heme biosynthetic process5.59E-03
103GO:0034599: cellular response to oxidative stress6.41E-03
104GO:0006782: protoporphyrinogen IX biosynthetic process6.99E-03
105GO:0048829: root cap development6.99E-03
106GO:0019684: photosynthesis, light reaction7.73E-03
107GO:0009089: lysine biosynthetic process via diaminopimelate7.73E-03
108GO:0009073: aromatic amino acid family biosynthetic process7.73E-03
109GO:0006415: translational termination7.73E-03
110GO:0009750: response to fructose7.73E-03
111GO:0016485: protein processing7.73E-03
112GO:0009684: indoleacetic acid biosynthetic process7.73E-03
113GO:0045037: protein import into chloroplast stroma8.49E-03
114GO:0010102: lateral root morphogenesis9.29E-03
115GO:0010628: positive regulation of gene expression9.29E-03
116GO:0006108: malate metabolic process9.29E-03
117GO:0009735: response to cytokinin9.33E-03
118GO:0019253: reductive pentose-phosphate cycle1.01E-02
119GO:0009266: response to temperature stimulus1.01E-02
120GO:0005985: sucrose metabolic process1.10E-02
121GO:0006636: unsaturated fatty acid biosynthetic process1.18E-02
122GO:0043086: negative regulation of catalytic activity1.26E-02
123GO:0009944: polarity specification of adaxial/abaxial axis1.27E-02
124GO:0055114: oxidation-reduction process1.34E-02
125GO:0007017: microtubule-based process1.37E-02
126GO:0051302: regulation of cell division1.37E-02
127GO:0016575: histone deacetylation1.37E-02
128GO:0003333: amino acid transmembrane transport1.46E-02
129GO:0009793: embryo development ending in seed dormancy1.46E-02
130GO:0019915: lipid storage1.46E-02
131GO:0016226: iron-sulfur cluster assembly1.56E-02
132GO:2000022: regulation of jasmonic acid mediated signaling pathway1.56E-02
133GO:0009686: gibberellin biosynthetic process1.66E-02
134GO:0040007: growth1.66E-02
135GO:0001944: vasculature development1.66E-02
136GO:0006284: base-excision repair1.76E-02
137GO:0008152: metabolic process2.14E-02
138GO:0048825: cotyledon development2.29E-02
139GO:0055072: iron ion homeostasis2.29E-02
140GO:0030163: protein catabolic process2.64E-02
141GO:0010090: trichome morphogenesis2.64E-02
142GO:1901657: glycosyl compound metabolic process2.64E-02
143GO:0006412: translation2.82E-02
144GO:0000910: cytokinesis3.01E-02
145GO:0016311: dephosphorylation3.65E-02
146GO:0009817: defense response to fungus, incompatible interaction3.78E-02
147GO:0048481: plant ovule development3.78E-02
148GO:0006499: N-terminal protein myristoylation4.05E-02
149GO:0009834: plant-type secondary cell wall biogenesis4.05E-02
150GO:0048527: lateral root development4.19E-02
151GO:0009853: photorespiration4.48E-02
152GO:0006099: tricarboxylic acid cycle4.62E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0016166: phytoene dehydrogenase activity0.00E+00
6GO:0043864: indoleacetamide hydrolase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0048039: ubiquinone binding0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0009899: ent-kaurene synthase activity0.00E+00
15GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
16GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
17GO:0005528: FK506 binding2.05E-06
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.75E-06
19GO:0004812: aminoacyl-tRNA ligase activity6.88E-06
20GO:0016279: protein-lysine N-methyltransferase activity4.12E-05
21GO:0008236: serine-type peptidase activity4.92E-05
22GO:0004040: amidase activity6.58E-05
23GO:0019843: rRNA binding7.45E-05
24GO:2001070: starch binding9.62E-05
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.76E-04
26GO:0004134: 4-alpha-glucanotransferase activity2.43E-04
27GO:0004645: phosphorylase activity2.43E-04
28GO:0004853: uroporphyrinogen decarboxylase activity2.43E-04
29GO:0004832: valine-tRNA ligase activity2.43E-04
30GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.43E-04
31GO:0004825: methionine-tRNA ligase activity2.43E-04
32GO:0016041: glutamate synthase (ferredoxin) activity2.43E-04
33GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.43E-04
34GO:0005227: calcium activated cation channel activity2.43E-04
35GO:0008184: glycogen phosphorylase activity2.43E-04
36GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.43E-04
37GO:0008047: enzyme activator activity4.61E-04
38GO:0044183: protein binding involved in protein folding5.33E-04
39GO:0003844: 1,4-alpha-glucan branching enzyme activity5.39E-04
40GO:0008967: phosphoglycolate phosphatase activity5.39E-04
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.39E-04
42GO:0010291: carotene beta-ring hydroxylase activity5.39E-04
43GO:0047746: chlorophyllase activity5.39E-04
44GO:0010297: heteropolysaccharide binding5.39E-04
45GO:0033201: alpha-1,4-glucan synthase activity5.39E-04
46GO:0004312: fatty acid synthase activity5.39E-04
47GO:0017150: tRNA dihydrouridine synthase activity8.75E-04
48GO:0002161: aminoacyl-tRNA editing activity8.75E-04
49GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.75E-04
50GO:0015462: ATPase-coupled protein transmembrane transporter activity8.75E-04
51GO:0043169: cation binding8.75E-04
52GO:0004373: glycogen (starch) synthase activity8.75E-04
53GO:0004857: enzyme inhibitor activity1.06E-03
54GO:0015203: polyamine transmembrane transporter activity1.25E-03
55GO:0016851: magnesium chelatase activity1.25E-03
56GO:0048487: beta-tubulin binding1.25E-03
57GO:0016149: translation release factor activity, codon specific1.25E-03
58GO:0043023: ribosomal large subunit binding1.25E-03
59GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.25E-03
60GO:0019199: transmembrane receptor protein kinase activity1.67E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.67E-03
62GO:0009011: starch synthase activity1.67E-03
63GO:0042277: peptide binding1.67E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.67E-03
65GO:0047134: protein-disulfide reductase activity1.79E-03
66GO:0051538: 3 iron, 4 sulfur cluster binding2.13E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity2.13E-03
68GO:0004791: thioredoxin-disulfide reductase activity2.24E-03
69GO:0016615: malate dehydrogenase activity2.62E-03
70GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.93E-03
71GO:0004017: adenylate kinase activity3.15E-03
72GO:0030060: L-malate dehydrogenase activity3.15E-03
73GO:0005261: cation channel activity3.15E-03
74GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.46E-03
75GO:0004252: serine-type endopeptidase activity3.81E-03
76GO:0004033: aldo-keto reductase (NADP) activity4.31E-03
77GO:0008173: RNA methyltransferase activity4.93E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.93E-03
79GO:0003747: translation release factor activity5.59E-03
80GO:0015174: basic amino acid transmembrane transporter activity6.27E-03
81GO:0047372: acylglycerol lipase activity7.73E-03
82GO:0043621: protein self-association8.55E-03
83GO:0004565: beta-galactosidase activity9.29E-03
84GO:0031072: heat shock protein binding9.29E-03
85GO:0004190: aspartic-type endopeptidase activity1.10E-02
86GO:0051536: iron-sulfur cluster binding1.27E-02
87GO:0004407: histone deacetylase activity1.27E-02
88GO:0004176: ATP-dependent peptidase activity1.46E-02
89GO:0051082: unfolded protein binding1.52E-02
90GO:0015035: protein disulfide oxidoreductase activity1.57E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.62E-02
92GO:0003756: protein disulfide isomerase activity1.76E-02
93GO:0048038: quinone binding2.41E-02
94GO:0005200: structural constituent of cytoskeleton2.88E-02
95GO:0016597: amino acid binding3.01E-02
96GO:0003735: structural constituent of ribosome3.08E-02
97GO:0016787: hydrolase activity3.49E-02
98GO:0102483: scopolin beta-glucosidase activity3.52E-02
99GO:0000287: magnesium ion binding4.00E-02
100GO:0004222: metalloendopeptidase activity4.05E-02
101GO:0003746: translation elongation factor activity4.48E-02
102GO:0016491: oxidoreductase activity4.55E-02
103GO:0008422: beta-glucosidase activity4.76E-02
104GO:0051539: 4 iron, 4 sulfur cluster binding4.91E-02
105GO:0008233: peptidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
5GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
6GO:0009507: chloroplast3.90E-47
7GO:0009570: chloroplast stroma1.80E-32
8GO:0009534: chloroplast thylakoid2.64E-30
9GO:0009941: chloroplast envelope1.81E-17
10GO:0009535: chloroplast thylakoid membrane1.03E-16
11GO:0009543: chloroplast thylakoid lumen7.28E-13
12GO:0031977: thylakoid lumen2.95E-10
13GO:0009579: thylakoid6.60E-08
14GO:0030095: chloroplast photosystem II9.47E-07
15GO:0009508: plastid chromosome3.40E-05
16GO:0009533: chloroplast stromal thylakoid1.74E-04
17GO:0009501: amyloplast2.22E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.43E-04
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.32E-04
20GO:0009295: nucleoid3.66E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex5.39E-04
22GO:0032040: small-subunit processome6.09E-04
23GO:0010007: magnesium chelatase complex8.75E-04
24GO:0009509: chromoplast8.75E-04
25GO:0090575: RNA polymerase II transcription factor complex8.75E-04
26GO:0005782: peroxisomal matrix8.75E-04
27GO:0005840: ribosome9.06E-04
28GO:0042651: thylakoid membrane1.17E-03
29GO:0009654: photosystem II oxygen evolving complex1.17E-03
30GO:0009536: plastid1.27E-03
31GO:0030660: Golgi-associated vesicle membrane1.67E-03
32GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.67E-03
33GO:0055035: plastid thylakoid membrane2.13E-03
34GO:0019898: extrinsic component of membrane2.40E-03
35GO:0009706: chloroplast inner membrane2.51E-03
36GO:0010287: plastoglobule3.12E-03
37GO:0010319: stromule3.31E-03
38GO:0005623: cell3.46E-03
39GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.31E-03
40GO:0031305: integral component of mitochondrial inner membrane4.31E-03
41GO:0042644: chloroplast nucleoid5.59E-03
42GO:0045298: tubulin complex5.59E-03
43GO:0005740: mitochondrial envelope6.99E-03
44GO:0005765: lysosomal membrane7.73E-03
45GO:0009574: preprophase band9.29E-03
46GO:0009523: photosystem II2.29E-02
47GO:0048046: apoplast3.40E-02
48GO:0015934: large ribosomal subunit4.19E-02
49GO:0005874: microtubule4.86E-02
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Gene type



Gene DE type