GO Enrichment Analysis of Co-expressed Genes with
AT2G28800
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
2 | GO:0017038: protein import | 0.00E+00 |
3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
4 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
5 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
6 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
7 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
8 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
9 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
10 | GO:0034337: RNA folding | 0.00E+00 |
11 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
12 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
13 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
14 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
15 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
16 | GO:0006000: fructose metabolic process | 1.73E-08 |
17 | GO:0009773: photosynthetic electron transport in photosystem I | 3.71E-07 |
18 | GO:0015979: photosynthesis | 1.30E-06 |
19 | GO:0006418: tRNA aminoacylation for protein translation | 2.58E-06 |
20 | GO:0018026: peptidyl-lysine monomethylation | 2.75E-06 |
21 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.75E-06 |
22 | GO:0006002: fructose 6-phosphate metabolic process | 6.80E-06 |
23 | GO:0010206: photosystem II repair | 9.52E-06 |
24 | GO:0006109: regulation of carbohydrate metabolic process | 4.12E-05 |
25 | GO:0015994: chlorophyll metabolic process | 4.12E-05 |
26 | GO:0061077: chaperone-mediated protein folding | 9.43E-05 |
27 | GO:0010190: cytochrome b6f complex assembly | 9.62E-05 |
28 | GO:0016117: carotenoid biosynthetic process | 1.56E-04 |
29 | GO:0005980: glycogen catabolic process | 2.43E-04 |
30 | GO:0006438: valyl-tRNA aminoacylation | 2.43E-04 |
31 | GO:0000481: maturation of 5S rRNA | 2.43E-04 |
32 | GO:0080093: regulation of photorespiration | 2.43E-04 |
33 | GO:0043609: regulation of carbon utilization | 2.43E-04 |
34 | GO:0043007: maintenance of rDNA | 2.43E-04 |
35 | GO:0031998: regulation of fatty acid beta-oxidation | 2.43E-04 |
36 | GO:0010028: xanthophyll cycle | 2.43E-04 |
37 | GO:0000023: maltose metabolic process | 2.43E-04 |
38 | GO:0006431: methionyl-tRNA aminoacylation | 2.43E-04 |
39 | GO:0000025: maltose catabolic process | 2.43E-04 |
40 | GO:0009657: plastid organization | 2.74E-04 |
41 | GO:0032544: plastid translation | 2.74E-04 |
42 | GO:0009658: chloroplast organization | 3.46E-04 |
43 | GO:0005982: starch metabolic process | 3.94E-04 |
44 | GO:0010027: thylakoid membrane organization | 4.26E-04 |
45 | GO:0043085: positive regulation of catalytic activity | 5.33E-04 |
46 | GO:0016560: protein import into peroxisome matrix, docking | 5.39E-04 |
47 | GO:0005976: polysaccharide metabolic process | 5.39E-04 |
48 | GO:0097054: L-glutamate biosynthetic process | 5.39E-04 |
49 | GO:0031648: protein destabilization | 5.39E-04 |
50 | GO:0016122: xanthophyll metabolic process | 5.39E-04 |
51 | GO:0051262: protein tetramerization | 5.39E-04 |
52 | GO:0005983: starch catabolic process | 6.09E-04 |
53 | GO:0006094: gluconeogenesis | 6.91E-04 |
54 | GO:0005986: sucrose biosynthetic process | 6.91E-04 |
55 | GO:0009631: cold acclimation | 7.19E-04 |
56 | GO:0006518: peptide metabolic process | 8.75E-04 |
57 | GO:0016050: vesicle organization | 8.75E-04 |
58 | GO:0048281: inflorescence morphogenesis | 8.75E-04 |
59 | GO:0006537: glutamate biosynthetic process | 1.25E-03 |
60 | GO:0010148: transpiration | 1.25E-03 |
61 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.25E-03 |
62 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.25E-03 |
63 | GO:0009409: response to cold | 1.58E-03 |
64 | GO:0015846: polyamine transport | 1.67E-03 |
65 | GO:0006552: leucine catabolic process | 1.67E-03 |
66 | GO:0010021: amylopectin biosynthetic process | 1.67E-03 |
67 | GO:0010106: cellular response to iron ion starvation | 1.67E-03 |
68 | GO:0006808: regulation of nitrogen utilization | 1.67E-03 |
69 | GO:0010109: regulation of photosynthesis | 1.67E-03 |
70 | GO:0019676: ammonia assimilation cycle | 1.67E-03 |
71 | GO:0051322: anaphase | 1.67E-03 |
72 | GO:0006662: glycerol ether metabolic process | 2.09E-03 |
73 | GO:0016120: carotene biosynthetic process | 2.13E-03 |
74 | GO:0032543: mitochondrial translation | 2.13E-03 |
75 | GO:0006097: glyoxylate cycle | 2.13E-03 |
76 | GO:0006461: protein complex assembly | 2.13E-03 |
77 | GO:0016123: xanthophyll biosynthetic process | 2.13E-03 |
78 | GO:0009646: response to absence of light | 2.24E-03 |
79 | GO:0019252: starch biosynthetic process | 2.40E-03 |
80 | GO:0009913: epidermal cell differentiation | 2.62E-03 |
81 | GO:0042793: transcription from plastid promoter | 2.62E-03 |
82 | GO:0000470: maturation of LSU-rRNA | 2.62E-03 |
83 | GO:0042026: protein refolding | 3.15E-03 |
84 | GO:1901259: chloroplast rRNA processing | 3.15E-03 |
85 | GO:0006458: 'de novo' protein folding | 3.15E-03 |
86 | GO:0030488: tRNA methylation | 3.15E-03 |
87 | GO:0045454: cell redox homeostasis | 3.25E-03 |
88 | GO:0010196: nonphotochemical quenching | 3.72E-03 |
89 | GO:0070370: cellular heat acclimation | 3.72E-03 |
90 | GO:0022904: respiratory electron transport chain | 3.72E-03 |
91 | GO:0010103: stomatal complex morphogenesis | 3.72E-03 |
92 | GO:0071446: cellular response to salicylic acid stimulus | 3.72E-03 |
93 | GO:0005978: glycogen biosynthetic process | 4.31E-03 |
94 | GO:0009642: response to light intensity | 4.31E-03 |
95 | GO:0006605: protein targeting | 4.31E-03 |
96 | GO:0032508: DNA duplex unwinding | 4.31E-03 |
97 | GO:0015995: chlorophyll biosynthetic process | 4.37E-03 |
98 | GO:0001558: regulation of cell growth | 4.93E-03 |
99 | GO:0017004: cytochrome complex assembly | 4.93E-03 |
100 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 4.93E-03 |
101 | GO:0051865: protein autoubiquitination | 5.59E-03 |
102 | GO:0006783: heme biosynthetic process | 5.59E-03 |
103 | GO:0034599: cellular response to oxidative stress | 6.41E-03 |
104 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.99E-03 |
105 | GO:0048829: root cap development | 6.99E-03 |
106 | GO:0019684: photosynthesis, light reaction | 7.73E-03 |
107 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.73E-03 |
108 | GO:0009073: aromatic amino acid family biosynthetic process | 7.73E-03 |
109 | GO:0006415: translational termination | 7.73E-03 |
110 | GO:0009750: response to fructose | 7.73E-03 |
111 | GO:0016485: protein processing | 7.73E-03 |
112 | GO:0009684: indoleacetic acid biosynthetic process | 7.73E-03 |
113 | GO:0045037: protein import into chloroplast stroma | 8.49E-03 |
114 | GO:0010102: lateral root morphogenesis | 9.29E-03 |
115 | GO:0010628: positive regulation of gene expression | 9.29E-03 |
116 | GO:0006108: malate metabolic process | 9.29E-03 |
117 | GO:0009735: response to cytokinin | 9.33E-03 |
118 | GO:0019253: reductive pentose-phosphate cycle | 1.01E-02 |
119 | GO:0009266: response to temperature stimulus | 1.01E-02 |
120 | GO:0005985: sucrose metabolic process | 1.10E-02 |
121 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.18E-02 |
122 | GO:0043086: negative regulation of catalytic activity | 1.26E-02 |
123 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.27E-02 |
124 | GO:0055114: oxidation-reduction process | 1.34E-02 |
125 | GO:0007017: microtubule-based process | 1.37E-02 |
126 | GO:0051302: regulation of cell division | 1.37E-02 |
127 | GO:0016575: histone deacetylation | 1.37E-02 |
128 | GO:0003333: amino acid transmembrane transport | 1.46E-02 |
129 | GO:0009793: embryo development ending in seed dormancy | 1.46E-02 |
130 | GO:0019915: lipid storage | 1.46E-02 |
131 | GO:0016226: iron-sulfur cluster assembly | 1.56E-02 |
132 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.56E-02 |
133 | GO:0009686: gibberellin biosynthetic process | 1.66E-02 |
134 | GO:0040007: growth | 1.66E-02 |
135 | GO:0001944: vasculature development | 1.66E-02 |
136 | GO:0006284: base-excision repair | 1.76E-02 |
137 | GO:0008152: metabolic process | 2.14E-02 |
138 | GO:0048825: cotyledon development | 2.29E-02 |
139 | GO:0055072: iron ion homeostasis | 2.29E-02 |
140 | GO:0030163: protein catabolic process | 2.64E-02 |
141 | GO:0010090: trichome morphogenesis | 2.64E-02 |
142 | GO:1901657: glycosyl compound metabolic process | 2.64E-02 |
143 | GO:0006412: translation | 2.82E-02 |
144 | GO:0000910: cytokinesis | 3.01E-02 |
145 | GO:0016311: dephosphorylation | 3.65E-02 |
146 | GO:0009817: defense response to fungus, incompatible interaction | 3.78E-02 |
147 | GO:0048481: plant ovule development | 3.78E-02 |
148 | GO:0006499: N-terminal protein myristoylation | 4.05E-02 |
149 | GO:0009834: plant-type secondary cell wall biogenesis | 4.05E-02 |
150 | GO:0048527: lateral root development | 4.19E-02 |
151 | GO:0009853: photorespiration | 4.48E-02 |
152 | GO:0006099: tricarboxylic acid cycle | 4.62E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
2 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
3 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
4 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
5 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
6 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
7 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
8 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
9 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
10 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
11 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
12 | GO:0048039: ubiquinone binding | 0.00E+00 |
13 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
14 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
15 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
16 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
17 | GO:0005528: FK506 binding | 2.05E-06 |
18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.75E-06 |
19 | GO:0004812: aminoacyl-tRNA ligase activity | 6.88E-06 |
20 | GO:0016279: protein-lysine N-methyltransferase activity | 4.12E-05 |
21 | GO:0008236: serine-type peptidase activity | 4.92E-05 |
22 | GO:0004040: amidase activity | 6.58E-05 |
23 | GO:0019843: rRNA binding | 7.45E-05 |
24 | GO:2001070: starch binding | 9.62E-05 |
25 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.76E-04 |
26 | GO:0004134: 4-alpha-glucanotransferase activity | 2.43E-04 |
27 | GO:0004645: phosphorylase activity | 2.43E-04 |
28 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.43E-04 |
29 | GO:0004832: valine-tRNA ligase activity | 2.43E-04 |
30 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.43E-04 |
31 | GO:0004825: methionine-tRNA ligase activity | 2.43E-04 |
32 | GO:0016041: glutamate synthase (ferredoxin) activity | 2.43E-04 |
33 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 2.43E-04 |
34 | GO:0005227: calcium activated cation channel activity | 2.43E-04 |
35 | GO:0008184: glycogen phosphorylase activity | 2.43E-04 |
36 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.43E-04 |
37 | GO:0008047: enzyme activator activity | 4.61E-04 |
38 | GO:0044183: protein binding involved in protein folding | 5.33E-04 |
39 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 5.39E-04 |
40 | GO:0008967: phosphoglycolate phosphatase activity | 5.39E-04 |
41 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.39E-04 |
42 | GO:0010291: carotene beta-ring hydroxylase activity | 5.39E-04 |
43 | GO:0047746: chlorophyllase activity | 5.39E-04 |
44 | GO:0010297: heteropolysaccharide binding | 5.39E-04 |
45 | GO:0033201: alpha-1,4-glucan synthase activity | 5.39E-04 |
46 | GO:0004312: fatty acid synthase activity | 5.39E-04 |
47 | GO:0017150: tRNA dihydrouridine synthase activity | 8.75E-04 |
48 | GO:0002161: aminoacyl-tRNA editing activity | 8.75E-04 |
49 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 8.75E-04 |
50 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 8.75E-04 |
51 | GO:0043169: cation binding | 8.75E-04 |
52 | GO:0004373: glycogen (starch) synthase activity | 8.75E-04 |
53 | GO:0004857: enzyme inhibitor activity | 1.06E-03 |
54 | GO:0015203: polyamine transmembrane transporter activity | 1.25E-03 |
55 | GO:0016851: magnesium chelatase activity | 1.25E-03 |
56 | GO:0048487: beta-tubulin binding | 1.25E-03 |
57 | GO:0016149: translation release factor activity, codon specific | 1.25E-03 |
58 | GO:0043023: ribosomal large subunit binding | 1.25E-03 |
59 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.25E-03 |
60 | GO:0019199: transmembrane receptor protein kinase activity | 1.67E-03 |
61 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.67E-03 |
62 | GO:0009011: starch synthase activity | 1.67E-03 |
63 | GO:0042277: peptide binding | 1.67E-03 |
64 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.67E-03 |
65 | GO:0047134: protein-disulfide reductase activity | 1.79E-03 |
66 | GO:0051538: 3 iron, 4 sulfur cluster binding | 2.13E-03 |
67 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.13E-03 |
68 | GO:0004791: thioredoxin-disulfide reductase activity | 2.24E-03 |
69 | GO:0016615: malate dehydrogenase activity | 2.62E-03 |
70 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.93E-03 |
71 | GO:0004017: adenylate kinase activity | 3.15E-03 |
72 | GO:0030060: L-malate dehydrogenase activity | 3.15E-03 |
73 | GO:0005261: cation channel activity | 3.15E-03 |
74 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.46E-03 |
75 | GO:0004252: serine-type endopeptidase activity | 3.81E-03 |
76 | GO:0004033: aldo-keto reductase (NADP) activity | 4.31E-03 |
77 | GO:0008173: RNA methyltransferase activity | 4.93E-03 |
78 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.93E-03 |
79 | GO:0003747: translation release factor activity | 5.59E-03 |
80 | GO:0015174: basic amino acid transmembrane transporter activity | 6.27E-03 |
81 | GO:0047372: acylglycerol lipase activity | 7.73E-03 |
82 | GO:0043621: protein self-association | 8.55E-03 |
83 | GO:0004565: beta-galactosidase activity | 9.29E-03 |
84 | GO:0031072: heat shock protein binding | 9.29E-03 |
85 | GO:0004190: aspartic-type endopeptidase activity | 1.10E-02 |
86 | GO:0051536: iron-sulfur cluster binding | 1.27E-02 |
87 | GO:0004407: histone deacetylase activity | 1.27E-02 |
88 | GO:0004176: ATP-dependent peptidase activity | 1.46E-02 |
89 | GO:0051082: unfolded protein binding | 1.52E-02 |
90 | GO:0015035: protein disulfide oxidoreductase activity | 1.57E-02 |
91 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.62E-02 |
92 | GO:0003756: protein disulfide isomerase activity | 1.76E-02 |
93 | GO:0048038: quinone binding | 2.41E-02 |
94 | GO:0005200: structural constituent of cytoskeleton | 2.88E-02 |
95 | GO:0016597: amino acid binding | 3.01E-02 |
96 | GO:0003735: structural constituent of ribosome | 3.08E-02 |
97 | GO:0016787: hydrolase activity | 3.49E-02 |
98 | GO:0102483: scopolin beta-glucosidase activity | 3.52E-02 |
99 | GO:0000287: magnesium ion binding | 4.00E-02 |
100 | GO:0004222: metalloendopeptidase activity | 4.05E-02 |
101 | GO:0003746: translation elongation factor activity | 4.48E-02 |
102 | GO:0016491: oxidoreductase activity | 4.55E-02 |
103 | GO:0008422: beta-glucosidase activity | 4.76E-02 |
104 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.91E-02 |
105 | GO:0008233: peptidase activity | 4.94E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0043233: organelle lumen | 0.00E+00 |
2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
3 | GO:0042579: microbody | 0.00E+00 |
4 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
5 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
6 | GO:0009507: chloroplast | 3.90E-47 |
7 | GO:0009570: chloroplast stroma | 1.80E-32 |
8 | GO:0009534: chloroplast thylakoid | 2.64E-30 |
9 | GO:0009941: chloroplast envelope | 1.81E-17 |
10 | GO:0009535: chloroplast thylakoid membrane | 1.03E-16 |
11 | GO:0009543: chloroplast thylakoid lumen | 7.28E-13 |
12 | GO:0031977: thylakoid lumen | 2.95E-10 |
13 | GO:0009579: thylakoid | 6.60E-08 |
14 | GO:0030095: chloroplast photosystem II | 9.47E-07 |
15 | GO:0009508: plastid chromosome | 3.40E-05 |
16 | GO:0009533: chloroplast stromal thylakoid | 1.74E-04 |
17 | GO:0009501: amyloplast | 2.22E-04 |
18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.43E-04 |
19 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.32E-04 |
20 | GO:0009295: nucleoid | 3.66E-04 |
21 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.39E-04 |
22 | GO:0032040: small-subunit processome | 6.09E-04 |
23 | GO:0010007: magnesium chelatase complex | 8.75E-04 |
24 | GO:0009509: chromoplast | 8.75E-04 |
25 | GO:0090575: RNA polymerase II transcription factor complex | 8.75E-04 |
26 | GO:0005782: peroxisomal matrix | 8.75E-04 |
27 | GO:0005840: ribosome | 9.06E-04 |
28 | GO:0042651: thylakoid membrane | 1.17E-03 |
29 | GO:0009654: photosystem II oxygen evolving complex | 1.17E-03 |
30 | GO:0009536: plastid | 1.27E-03 |
31 | GO:0030660: Golgi-associated vesicle membrane | 1.67E-03 |
32 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.67E-03 |
33 | GO:0055035: plastid thylakoid membrane | 2.13E-03 |
34 | GO:0019898: extrinsic component of membrane | 2.40E-03 |
35 | GO:0009706: chloroplast inner membrane | 2.51E-03 |
36 | GO:0010287: plastoglobule | 3.12E-03 |
37 | GO:0010319: stromule | 3.31E-03 |
38 | GO:0005623: cell | 3.46E-03 |
39 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 4.31E-03 |
40 | GO:0031305: integral component of mitochondrial inner membrane | 4.31E-03 |
41 | GO:0042644: chloroplast nucleoid | 5.59E-03 |
42 | GO:0045298: tubulin complex | 5.59E-03 |
43 | GO:0005740: mitochondrial envelope | 6.99E-03 |
44 | GO:0005765: lysosomal membrane | 7.73E-03 |
45 | GO:0009574: preprophase band | 9.29E-03 |
46 | GO:0009523: photosystem II | 2.29E-02 |
47 | GO:0048046: apoplast | 3.40E-02 |
48 | GO:0015934: large ribosomal subunit | 4.19E-02 |
49 | GO:0005874: microtubule | 4.86E-02 |