Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0071902: positive regulation of protein serine/threonine kinase activity1.97E-05
3GO:0032958: inositol phosphate biosynthetic process1.97E-05
4GO:0090548: response to nitrate starvation1.97E-05
5GO:0000025: maltose catabolic process1.97E-05
6GO:0005980: glycogen catabolic process1.97E-05
7GO:1902025: nitrate import1.97E-05
8GO:0010506: regulation of autophagy9.05E-05
9GO:0071230: cellular response to amino acid stimulus9.05E-05
10GO:0080055: low-affinity nitrate transport9.05E-05
11GO:0031929: TOR signaling9.05E-05
12GO:0006020: inositol metabolic process1.36E-04
13GO:0009817: defense response to fungus, incompatible interaction1.85E-04
14GO:2000122: negative regulation of stomatal complex development1.86E-04
15GO:0010037: response to carbon dioxide1.86E-04
16GO:0015976: carbon utilization1.86E-04
17GO:0010023: proanthocyanidin biosynthetic process1.86E-04
18GO:0048497: maintenance of floral organ identity2.40E-04
19GO:0009913: epidermal cell differentiation2.97E-04
20GO:0009267: cellular response to starvation2.97E-04
21GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.57E-04
22GO:0030307: positive regulation of cell growth4.19E-04
23GO:0006783: heme biosynthetic process6.19E-04
24GO:0042761: very long-chain fatty acid biosynthetic process6.90E-04
25GO:0006782: protoporphyrinogen IX biosynthetic process7.62E-04
26GO:0008361: regulation of cell size9.12E-04
27GO:0005983: starch catabolic process9.12E-04
28GO:0010582: floral meristem determinacy9.12E-04
29GO:0006006: glucose metabolic process9.90E-04
30GO:0009718: anthocyanin-containing compound biosynthetic process9.90E-04
31GO:0006094: gluconeogenesis9.90E-04
32GO:0009266: response to temperature stimulus1.07E-03
33GO:0010143: cutin biosynthetic process1.07E-03
34GO:0010025: wax biosynthetic process1.23E-03
35GO:0007017: microtubule-based process1.41E-03
36GO:0000271: polysaccharide biosynthetic process1.98E-03
37GO:0010051: xylem and phloem pattern formation1.98E-03
38GO:0042335: cuticle development1.98E-03
39GO:0045489: pectin biosynthetic process2.08E-03
40GO:0048825: cotyledon development2.29E-03
41GO:0009911: positive regulation of flower development3.07E-03
42GO:0015995: chlorophyll biosynthetic process3.43E-03
43GO:0016049: cell growth3.55E-03
44GO:0010119: regulation of stomatal movement4.06E-03
45GO:0016051: carbohydrate biosynthetic process4.32E-03
46GO:0009644: response to high light intensity5.42E-03
47GO:0009636: response to toxic substance5.56E-03
48GO:0006855: drug transmembrane transport5.71E-03
49GO:0000165: MAPK cascade5.86E-03
50GO:0006857: oligopeptide transport6.61E-03
51GO:0006096: glycolytic process7.08E-03
52GO:0071555: cell wall organization9.51E-03
53GO:0009845: seed germination9.96E-03
54GO:0009739: response to gibberellin1.28E-02
55GO:0046686: response to cadmium ion1.49E-02
56GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.52E-02
57GO:0009723: response to ethylene1.78E-02
58GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.92E-02
59GO:0015979: photosynthesis2.06E-02
60GO:0032259: methylation2.40E-02
61GO:0016042: lipid catabolic process2.42E-02
62GO:0009751: response to salicylic acid2.45E-02
63GO:0006629: lipid metabolic process2.47E-02
64GO:0009753: response to jasmonic acid2.60E-02
65GO:0055085: transmembrane transport4.41E-02
RankGO TermAdjusted P value
1GO:0017046: peptide hormone binding0.00E+00
2GO:0004134: 4-alpha-glucanotransferase activity1.97E-05
3GO:0004645: phosphorylase activity1.97E-05
4GO:0033857: diphosphoinositol-pentakisphosphate kinase activity1.97E-05
5GO:0000829: inositol heptakisphosphate kinase activity1.97E-05
6GO:0008184: glycogen phosphorylase activity1.97E-05
7GO:0000828: inositol hexakisphosphate kinase activity1.97E-05
8GO:0004853: uroporphyrinogen decarboxylase activity1.97E-05
9GO:0018708: thiol S-methyltransferase activity5.10E-05
10GO:0050736: O-malonyltransferase activity5.10E-05
11GO:0080054: low-affinity nitrate transmembrane transporter activity9.05E-05
12GO:0050734: hydroxycinnamoyltransferase activity9.05E-05
13GO:0042277: peptide binding1.86E-04
14GO:0004332: fructose-bisphosphate aldolase activity2.97E-04
15GO:0030674: protein binding, bridging4.84E-04
16GO:0016740: transferase activity7.34E-04
17GO:0047372: acylglycerol lipase activity8.37E-04
18GO:0004022: alcohol dehydrogenase (NAD) activity9.90E-04
19GO:0004089: carbonate dehydratase activity9.90E-04
20GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.22E-03
21GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.59E-03
22GO:0048038: quinone binding2.40E-03
23GO:0005200: structural constituent of cytoskeleton2.84E-03
24GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.24E-03
25GO:0016758: transferase activity, transferring hexosyl groups9.24E-03
26GO:0030170: pyridoxal phosphate binding1.01E-02
27GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.03E-02
28GO:0016491: oxidoreductase activity1.25E-02
29GO:0008168: methyltransferase activity1.57E-02
30GO:0016788: hydrolase activity, acting on ester bonds1.63E-02
31GO:0052689: carboxylic ester hydrolase activity2.01E-02
32GO:0003924: GTPase activity2.47E-02
33GO:0008289: lipid binding3.13E-02
34GO:0016757: transferase activity, transferring glycosyl groups3.25E-02
35GO:0000166: nucleotide binding3.72E-02
36GO:0004674: protein serine/threonine kinase activity4.69E-02
RankGO TermAdjusted P value
1GO:0031931: TORC1 complex9.05E-05
2GO:0009501: amyloplast4.84E-04
3GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.19E-04
4GO:0045298: tubulin complex6.19E-04
5GO:0005737: cytoplasm1.84E-03
6GO:0010319: stromule2.84E-03
7GO:0009570: chloroplast stroma3.22E-03
8GO:0009535: chloroplast thylakoid membrane3.78E-03
9GO:0009507: chloroplast4.08E-03
10GO:0005886: plasma membrane1.53E-02
11GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.72E-02
12GO:0005874: microtubule1.83E-02
13GO:0016020: membrane2.56E-02
14GO:0048046: apoplast3.47E-02
15GO:0005618: cell wall3.78E-02
16GO:0009579: thylakoid4.23E-02
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Gene type



Gene DE type