co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28605

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0071482: cellular response to light stimulus	6.09E-05
5	GO:1904966: positive regulation of vitamin E biosynthetic process	8.96E-05
6	GO:1904964: positive regulation of phytol biosynthetic process	8.96E-05
7	GO:0006352: DNA-templated transcription, initiation	1.29E-04
8	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.12E-04
9	GO:0006954: inflammatory response	3.54E-04
10	GO:0005977: glycogen metabolic process	3.54E-04
11	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.10E-04
12	GO:0009052: pentose-phosphate shunt, non-oxidative branch	5.10E-04
13	GO:0009650: UV protection	5.10E-04
14	GO:2001141: regulation of RNA biosynthetic process	5.10E-04
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.10E-04
16	GO:0009102: biotin biosynthetic process	5.10E-04
17	GO:0071483: cellular response to blue light	6.78E-04
18	GO:0010021: amylopectin biosynthetic process	6.78E-04
19	GO:0009765: photosynthesis, light harvesting	6.78E-04
20	GO:0016120: carotene biosynthetic process	8.59E-04
21	GO:0006564: L-serine biosynthetic process	8.59E-04
22	GO:0016123: xanthophyll biosynthetic process	8.59E-04
23	GO:0032973: amino acid export	1.05E-03
24	GO:0010190: cytochrome b6f complex assembly	1.05E-03
25	GO:1901259: chloroplast rRNA processing	1.25E-03
26	GO:0043090: amino acid import	1.46E-03
27	GO:0009658: chloroplast organization	1.50E-03
28	GO:0042255: ribosome assembly	1.69E-03
29	GO:0006353: DNA-templated transcription, termination	1.69E-03
30	GO:0006605: protein targeting	1.69E-03
31	GO:0010492: maintenance of shoot apical meristem identity	1.69E-03
32	GO:0048564: photosystem I assembly	1.69E-03
33	GO:0017004: cytochrome complex assembly	1.93E-03
34	GO:0006098: pentose-phosphate shunt	2.18E-03
35	GO:0048507: meristem development	2.18E-03
36	GO:0080144: amino acid homeostasis	2.18E-03
37	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.70E-03
38	GO:0009773: photosynthetic electron transport in photosystem I	2.98E-03
39	GO:1903507: negative regulation of nucleic acid-templated transcription	2.98E-03
40	GO:0005983: starch catabolic process	3.26E-03
41	GO:2000012: regulation of auxin polar transport	3.56E-03
42	GO:0010628: positive regulation of gene expression	3.56E-03
43	GO:0006094: gluconeogenesis	3.56E-03
44	GO:0010020: chloroplast fission	3.86E-03
45	GO:0090351: seedling development	4.18E-03
46	GO:0006863: purine nucleobase transport	4.50E-03
47	GO:0048511: rhythmic process	5.52E-03
48	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.87E-03
49	GO:0080092: regulation of pollen tube growth	5.87E-03
50	GO:0009411: response to UV	6.23E-03
51	GO:0006284: base-excision repair	6.61E-03
52	GO:0009306: protein secretion	6.61E-03
53	GO:0009451: RNA modification	6.67E-03
54	GO:0016117: carotenoid biosynthetic process	6.99E-03
55	GO:0005975: carbohydrate metabolic process	7.03E-03
56	GO:0008033: tRNA processing	7.37E-03
57	GO:0007166: cell surface receptor signaling pathway	7.46E-03
58	GO:0048868: pollen tube development	7.77E-03
59	GO:0007018: microtubule-based movement	8.17E-03
60	GO:0006814: sodium ion transport	8.17E-03
61	GO:0042752: regulation of circadian rhythm	8.17E-03
62	GO:0019252: starch biosynthetic process	8.58E-03
63	GO:0010193: response to ozone	8.99E-03
64	GO:0016032: viral process	9.42E-03
65	GO:0032502: developmental process	9.42E-03
66	GO:0001666: response to hypoxia	1.17E-02
67	GO:0010027: thylakoid membrane organization	1.17E-02
68	GO:0009627: systemic acquired resistance	1.26E-02
69	GO:0016311: dephosphorylation	1.36E-02
70	GO:0009817: defense response to fungus, incompatible interaction	1.41E-02
71	GO:0018298: protein-chromophore linkage	1.41E-02
72	GO:0015979: photosynthesis	1.43E-02
73	GO:0006952: defense response	1.62E-02
74	GO:0009637: response to blue light	1.66E-02
75	GO:0006281: DNA repair	1.86E-02
76	GO:0010114: response to red light	1.99E-02
77	GO:0051707: response to other organism	1.99E-02
78	GO:0031347: regulation of defense response	2.28E-02
79	GO:0009664: plant-type cell wall organization	2.34E-02
80	GO:0010224: response to UV-B	2.52E-02
81	GO:0006810: transport	2.65E-02
82	GO:0006096: glycolytic process	2.77E-02
83	GO:0009553: embryo sac development	3.10E-02
84	GO:0009555: pollen development	3.29E-02
85	GO:0009611: response to wounding	3.37E-02
86	GO:0009790: embryo development	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0016987: sigma factor activity	7.45E-06
4	GO:0001053: plastid sigma factor activity	7.45E-06
5	GO:0050308: sugar-phosphatase activity	8.96E-05
6	GO:0019203: carbohydrate phosphatase activity	8.96E-05
7	GO:0019156: isoamylase activity	2.12E-04
8	GO:0004617: phosphoglycerate dehydrogenase activity	2.12E-04
9	GO:0004751: ribose-5-phosphate isomerase activity	3.54E-04
10	GO:0008508: bile acid:sodium symporter activity	5.10E-04
11	GO:0043495: protein anchor	6.78E-04
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.78E-04
13	GO:0008725: DNA-3-methyladenine glycosylase activity	8.59E-04
14	GO:0042578: phosphoric ester hydrolase activity	1.05E-03
15	GO:0004556: alpha-amylase activity	1.05E-03
16	GO:2001070: starch binding	1.05E-03
17	GO:0004332: fructose-bisphosphate aldolase activity	1.05E-03
18	GO:0008195: phosphatidate phosphatase activity	1.25E-03
19	GO:0019899: enzyme binding	1.46E-03
20	GO:0003993: acid phosphatase activity	1.63E-03
21	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.18E-03
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.32E-03
23	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.67E-03
24	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.98E-03
25	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.86E-03
26	GO:0019843: rRNA binding	4.73E-03
27	GO:0005528: FK506 binding	4.83E-03
28	GO:0003714: transcription corepressor activity	4.83E-03
29	GO:0005345: purine nucleobase transmembrane transporter activity	5.17E-03
30	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.08E-03
31	GO:0022891: substrate-specific transmembrane transporter activity	6.23E-03
32	GO:0003727: single-stranded RNA binding	6.61E-03
33	GO:0042802: identical protein binding	8.29E-03
34	GO:0048038: quinone binding	8.99E-03
35	GO:0016597: amino acid binding	1.12E-02
36	GO:0016168: chlorophyll binding	1.21E-02
37	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.41E-02
38	GO:0005096: GTPase activator activity	1.46E-02
39	GO:0051539: 4 iron, 4 sulfur cluster binding	1.82E-02
40	GO:0004519: endonuclease activity	2.02E-02
41	GO:0051537: 2 iron, 2 sulfur cluster binding	2.10E-02
42	GO:0005198: structural molecule activity	2.16E-02
43	GO:0051287: NAD binding	2.28E-02
44	GO:0003690: double-stranded DNA binding	2.52E-02
45	GO:0003777: microtubule motor activity	2.65E-02
46	GO:0015171: amino acid transmembrane transporter activity	2.65E-02
47	GO:0016874: ligase activity	3.03E-02
48	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.78E-02
49	GO:0008017: microtubule binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	4.46E-15
3	GO:0009535: chloroplast thylakoid membrane	4.03E-08
4	GO:0042651: thylakoid membrane	8.93E-06
5	GO:0009543: chloroplast thylakoid lumen	5.34E-05
6	GO:0030095: chloroplast photosystem II	1.97E-04
7	GO:0042646: plastid nucleoid	5.10E-04
8	GO:0009531: secondary cell wall	5.10E-04
9	GO:0009538: photosystem I reaction center	1.69E-03
10	GO:0042644: chloroplast nucleoid	2.18E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.18E-03
12	GO:0016324: apical plasma membrane	2.70E-03
13	GO:0090404: pollen tube tip	2.98E-03
14	GO:0009654: photosystem II oxygen evolving complex	5.17E-03
15	GO:0009532: plastid stroma	5.52E-03
16	GO:0005871: kinesin complex	6.99E-03
17	GO:0009523: photosystem II	8.58E-03
18	GO:0019898: extrinsic component of membrane	8.58E-03
19	GO:0031225: anchored component of membrane	1.17E-02
20	GO:0005874: microtubule	1.21E-02
21	GO:0031977: thylakoid lumen	1.88E-02
22	GO:0009570: chloroplast stroma	2.16E-02
23	GO:0010287: plastoglobule	3.57E-02
24	GO:0009941: chloroplast envelope	3.79E-02
25	GO:0009579: thylakoid	3.93E-02
26	GO:0009534: chloroplast thylakoid	3.97E-02
27	GO:0016020: membrane	4.05E-02