GO Enrichment Analysis of Co-expressed Genes with
AT2G28600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 3 | GO:0006364: rRNA processing | 3.32E-13 |
| 4 | GO:0000028: ribosomal small subunit assembly | 5.51E-06 |
| 5 | GO:0010162: seed dormancy process | 1.39E-05 |
| 6 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.30E-05 |
| 7 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.30E-05 |
| 8 | GO:2000232: regulation of rRNA processing | 2.30E-05 |
| 9 | GO:0043985: histone H4-R3 methylation | 2.30E-05 |
| 10 | GO:0006407: rRNA export from nucleus | 2.30E-05 |
| 11 | GO:0000469: cleavage involved in rRNA processing | 2.30E-05 |
| 12 | GO:0030490: maturation of SSU-rRNA | 2.30E-05 |
| 13 | GO:0016569: covalent chromatin modification | 3.28E-05 |
| 14 | GO:0009553: embryo sac development | 3.43E-05 |
| 15 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.89E-05 |
| 16 | GO:0034470: ncRNA processing | 5.89E-05 |
| 17 | GO:0009561: megagametogenesis | 6.90E-05 |
| 18 | GO:0045604: regulation of epidermal cell differentiation | 1.04E-04 |
| 19 | GO:0042273: ribosomal large subunit biogenesis | 2.12E-04 |
| 20 | GO:0006479: protein methylation | 2.12E-04 |
| 21 | GO:0042274: ribosomal small subunit biogenesis | 2.12E-04 |
| 22 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.04E-04 |
| 23 | GO:0048444: floral organ morphogenesis | 4.04E-04 |
| 24 | GO:0010077: maintenance of inflorescence meristem identity | 4.04E-04 |
| 25 | GO:0045995: regulation of embryonic development | 4.74E-04 |
| 26 | GO:2000024: regulation of leaf development | 6.98E-04 |
| 27 | GO:0030422: production of siRNA involved in RNA interference | 8.59E-04 |
| 28 | GO:0010582: floral meristem determinacy | 1.03E-03 |
| 29 | GO:0010030: positive regulation of seed germination | 1.30E-03 |
| 30 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.49E-03 |
| 31 | GO:0042254: ribosome biogenesis | 1.81E-03 |
| 32 | GO:0009693: ethylene biosynthetic process | 1.91E-03 |
| 33 | GO:0009294: DNA mediated transformation | 1.91E-03 |
| 34 | GO:0010501: RNA secondary structure unwinding | 2.24E-03 |
| 35 | GO:0048825: cotyledon development | 2.60E-03 |
| 36 | GO:0045892: negative regulation of transcription, DNA-templated | 2.66E-03 |
| 37 | GO:0008219: cell death | 4.17E-03 |
| 38 | GO:0009555: pollen development | 5.67E-03 |
| 39 | GO:0006396: RNA processing | 9.36E-03 |
| 40 | GO:0009790: embryo development | 1.20E-02 |
| 41 | GO:0010150: leaf senescence | 1.35E-02 |
| 42 | GO:0006412: translation | 1.41E-02 |
| 43 | GO:0007166: cell surface receptor signaling pathway | 1.48E-02 |
| 44 | GO:0032259: methylation | 2.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0004407: histone deacetylase activity | 3.37E-07 |
| 4 | GO:0003723: RNA binding | 4.40E-06 |
| 5 | GO:0030515: snoRNA binding | 4.74E-04 |
| 6 | GO:0000166: nucleotide binding | 7.28E-04 |
| 7 | GO:0008026: ATP-dependent helicase activity | 7.35E-04 |
| 8 | GO:0016787: hydrolase activity | 8.00E-04 |
| 9 | GO:0001054: RNA polymerase I activity | 9.42E-04 |
| 10 | GO:0001056: RNA polymerase III activity | 1.03E-03 |
| 11 | GO:0004521: endoribonuclease activity | 1.03E-03 |
| 12 | GO:0008168: methyltransferase activity | 1.71E-03 |
| 13 | GO:0003676: nucleic acid binding | 2.13E-03 |
| 14 | GO:0004527: exonuclease activity | 2.36E-03 |
| 15 | GO:0003713: transcription coactivator activity | 2.36E-03 |
| 16 | GO:0004004: ATP-dependent RNA helicase activity | 3.89E-03 |
| 17 | GO:0003735: structural constituent of ribosome | 4.14E-03 |
| 18 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 5.05E-03 |
| 19 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.18E-03 |
| 20 | GO:0019843: rRNA binding | 1.07E-02 |
| 21 | GO:0003924: GTPase activity | 2.83E-02 |
| 22 | GO:0016887: ATPase activity | 3.86E-02 |
| 23 | GO:0016740: transferase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005730: nucleolus | 1.73E-29 |
| 2 | GO:0005634: nucleus | 7.70E-06 |
| 3 | GO:0032040: small-subunit processome | 1.99E-05 |
| 4 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 2.30E-05 |
| 5 | GO:0030688: preribosome, small subunit precursor | 2.30E-05 |
| 6 | GO:0030686: 90S preribosome | 2.30E-05 |
| 7 | GO:0070545: PeBoW complex | 5.89E-05 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.77E-04 |
| 9 | GO:0030687: preribosome, large subunit precursor | 4.74E-04 |
| 10 | GO:0034399: nuclear periphery | 5.46E-04 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 6.98E-04 |
| 12 | GO:0005666: DNA-directed RNA polymerase III complex | 7.77E-04 |
| 13 | GO:0005654: nucleoplasm | 8.40E-04 |
| 14 | GO:0022627: cytosolic small ribosomal subunit | 1.53E-03 |
| 15 | GO:0015935: small ribosomal subunit | 1.70E-03 |
| 16 | GO:0030529: intracellular ribonucleoprotein complex | 3.48E-03 |
| 17 | GO:0015934: large ribosomal subunit | 4.60E-03 |
| 18 | GO:0005834: heterotrimeric G-protein complex | 8.42E-03 |
| 19 | GO:0005622: intracellular | 1.01E-02 |
| 20 | GO:0022625: cytosolic large ribosomal subunit | 2.22E-02 |
| 21 | GO:0022626: cytosolic ribosome | 4.12E-02 |
| 22 | GO:0005618: cell wall | 4.55E-02 |