co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0016118: carotenoid catabolic process	0.00E+00
6	GO:0015882: L-ascorbic acid transport	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0015979: photosynthesis	8.02E-14
10	GO:0009768: photosynthesis, light harvesting in photosystem I	3.64E-11
11	GO:0018298: protein-chromophore linkage	8.55E-11
12	GO:0009769: photosynthesis, light harvesting in photosystem II	3.00E-09
13	GO:0009645: response to low light intensity stimulus	6.36E-07
14	GO:0010114: response to red light	9.63E-07
15	GO:0009644: response to high light intensity	1.19E-06
16	GO:0010206: photosystem II repair	2.05E-06
17	GO:0010218: response to far red light	1.13E-05
18	GO:0006021: inositol biosynthetic process	1.40E-05
19	GO:0009269: response to desiccation	2.39E-05
20	GO:0042549: photosystem II stabilization	3.44E-05
21	GO:0010196: nonphotochemical quenching	6.54E-05
22	GO:0009416: response to light stimulus	9.99E-05
23	GO:0000481: maturation of 5S rRNA	1.30E-04
24	GO:0043007: maintenance of rDNA	1.30E-04
25	GO:0010028: xanthophyll cycle	1.30E-04
26	GO:0034337: RNA folding	1.30E-04
27	GO:0006098: pentose-phosphate shunt	1.31E-04
28	GO:0016311: dephosphorylation	1.74E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	2.19E-04
30	GO:0019684: photosynthesis, light reaction	2.19E-04
31	GO:0005983: starch catabolic process	2.53E-04
32	GO:0009637: response to blue light	2.58E-04
33	GO:0006094: gluconeogenesis	2.89E-04
34	GO:0035304: regulation of protein dephosphorylation	2.99E-04
35	GO:0009629: response to gravity	2.99E-04
36	GO:0016124: xanthophyll catabolic process	2.99E-04
37	GO:0006432: phenylalanyl-tRNA aminoacylation	2.99E-04
38	GO:0006729: tetrahydrobiopterin biosynthetic process	2.99E-04
39	GO:0016121: carotene catabolic process	2.99E-04
40	GO:0010207: photosystem II assembly	3.27E-04
41	GO:0090391: granum assembly	4.92E-04
42	GO:0005977: glycogen metabolic process	4.92E-04
43	GO:0006096: glycolytic process	6.55E-04
44	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.04E-04
45	GO:0006020: inositol metabolic process	7.04E-04
46	GO:0071484: cellular response to light intensity	7.04E-04
47	GO:0006552: leucine catabolic process	9.34E-04
48	GO:0030104: water homeostasis	9.34E-04
49	GO:0006546: glycine catabolic process	9.34E-04
50	GO:0010021: amylopectin biosynthetic process	9.34E-04
51	GO:0015976: carbon utilization	9.34E-04
52	GO:0019464: glycine decarboxylation via glycine cleavage system	9.34E-04
53	GO:0009765: photosynthesis, light harvesting	9.34E-04
54	GO:0006109: regulation of carbohydrate metabolic process	9.34E-04
55	GO:0015994: chlorophyll metabolic process	9.34E-04
56	GO:0016558: protein import into peroxisome matrix	1.18E-03
57	GO:0010236: plastoquinone biosynthetic process	1.18E-03
58	GO:0016123: xanthophyll biosynthetic process	1.18E-03
59	GO:0046855: inositol phosphate dephosphorylation	1.45E-03
60	GO:0009635: response to herbicide	1.45E-03
61	GO:0050665: hydrogen peroxide biosynthetic process	1.45E-03
62	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.45E-03
63	GO:0010027: thylakoid membrane organization	1.55E-03
64	GO:0010189: vitamin E biosynthetic process	1.73E-03
65	GO:0009854: oxidative photosynthetic carbon pathway	1.73E-03
66	GO:1900057: positive regulation of leaf senescence	2.04E-03
67	GO:0022904: respiratory electron transport chain	2.04E-03
68	GO:0009813: flavonoid biosynthetic process	2.11E-03
69	GO:0009642: response to light intensity	2.36E-03
70	GO:0030091: protein repair	2.36E-03
71	GO:0032508: DNA duplex unwinding	2.36E-03
72	GO:0031540: regulation of anthocyanin biosynthetic process	2.36E-03
73	GO:0000105: histidine biosynthetic process	2.36E-03
74	GO:0009231: riboflavin biosynthetic process	2.36E-03
75	GO:0016559: peroxisome fission	2.36E-03
76	GO:0009735: response to cytokinin	2.39E-03
77	GO:0017004: cytochrome complex assembly	2.69E-03
78	GO:0090333: regulation of stomatal closure	3.04E-03
79	GO:0098656: anion transmembrane transport	3.04E-03
80	GO:0055114: oxidation-reduction process	3.36E-03
81	GO:0010205: photoinhibition	3.41E-03
82	GO:0009688: abscisic acid biosynthetic process	3.79E-03
83	GO:0009089: lysine biosynthetic process via diaminopimelate	4.18E-03
84	GO:0043085: positive regulation of catalytic activity	4.18E-03
85	GO:0006790: sulfur compound metabolic process	4.58E-03
86	GO:0006006: glucose metabolic process	5.00E-03
87	GO:0010020: chloroplast fission	5.44E-03
88	GO:0019253: reductive pentose-phosphate cycle	5.44E-03
89	GO:0010030: positive regulation of seed germination	5.88E-03
90	GO:0046854: phosphatidylinositol phosphorylation	5.88E-03
91	GO:0000162: tryptophan biosynthetic process	6.34E-03
92	GO:0035428: hexose transmembrane transport	8.30E-03
93	GO:0071215: cellular response to abscisic acid stimulus	8.82E-03
94	GO:0071369: cellular response to ethylene stimulus	8.82E-03
95	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.90E-03
96	GO:0042631: cellular response to water deprivation	1.04E-02
97	GO:0006662: glycerol ether metabolic process	1.10E-02
98	GO:0010182: sugar mediated signaling pathway	1.10E-02
99	GO:0046323: glucose import	1.10E-02
100	GO:0006814: sodium ion transport	1.16E-02
101	GO:0009646: response to absence of light	1.16E-02
102	GO:0019252: starch biosynthetic process	1.22E-02
103	GO:0008654: phospholipid biosynthetic process	1.22E-02
104	GO:0009409: response to cold	1.26E-02
105	GO:0071554: cell wall organization or biogenesis	1.28E-02
106	GO:0006635: fatty acid beta-oxidation	1.28E-02
107	GO:0051607: defense response to virus	1.59E-02
108	GO:0009627: systemic acquired resistance	1.79E-02
109	GO:0015995: chlorophyll biosynthetic process	1.86E-02
110	GO:0006811: ion transport	2.15E-02
111	GO:0010119: regulation of stomatal movement	2.22E-02
112	GO:0009867: jasmonic acid mediated signaling pathway	2.37E-02
113	GO:0034599: cellular response to oxidative stress	2.45E-02
114	GO:0045454: cell redox homeostasis	2.48E-02
115	GO:0006631: fatty acid metabolic process	2.68E-02
116	GO:0042542: response to hydrogen peroxide	2.76E-02
117	GO:0009926: auxin polar transport	2.84E-02
118	GO:0042742: defense response to bacterium	3.06E-02
119	GO:0006281: DNA repair	3.06E-02
120	GO:0009408: response to heat	3.06E-02
121	GO:0006979: response to oxidative stress	3.09E-02
122	GO:0006364: rRNA processing	3.51E-02
123	GO:0009733: response to auxin	3.53E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	3.60E-02
125	GO:0010224: response to UV-B	3.60E-02
126	GO:0043086: negative regulation of catalytic activity	3.95E-02
127	GO:0009624: response to nematode	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0042623: ATPase activity, coupled	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
10	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
11	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
12	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
13	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
14	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
15	GO:0031409: pigment binding	1.75E-11
16	GO:0016168: chlorophyll binding	2.54E-09
17	GO:0004332: fructose-bisphosphate aldolase activity	3.44E-05
18	GO:0050308: sugar-phosphatase activity	1.30E-04
19	GO:0010242: oxygen evolving activity	1.30E-04
20	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.30E-04
21	GO:0019203: carbohydrate phosphatase activity	1.30E-04
22	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.30E-04
23	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.30E-04
24	GO:0005315: inorganic phosphate transmembrane transporter activity	2.89E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	2.99E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	2.99E-04
27	GO:0004826: phenylalanine-tRNA ligase activity	2.99E-04
28	GO:0004512: inositol-3-phosphate synthase activity	2.99E-04
29	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.99E-04
30	GO:0019172: glyoxalase III activity	2.99E-04
31	GO:0019156: isoamylase activity	2.99E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.99E-04
33	GO:0047746: chlorophyllase activity	2.99E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	2.99E-04
35	GO:0003913: DNA photolyase activity	4.92E-04
36	GO:0005504: fatty acid binding	4.92E-04
37	GO:0004751: ribose-5-phosphate isomerase activity	4.92E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.92E-04
39	GO:0016851: magnesium chelatase activity	7.04E-04
40	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.04E-04
41	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.04E-04
42	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.04E-04
43	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.04E-04
44	GO:0008514: organic anion transmembrane transporter activity	7.09E-04
45	GO:0045430: chalcone isomerase activity	9.34E-04
46	GO:0008891: glycolate oxidase activity	9.34E-04
47	GO:0046872: metal ion binding	1.08E-03
48	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.18E-03
49	GO:0000293: ferric-chelate reductase activity	1.45E-03
50	GO:0004556: alpha-amylase activity	1.45E-03
51	GO:0004462: lactoylglutathione lyase activity	1.45E-03
52	GO:2001070: starch binding	1.45E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.73E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.73E-03
55	GO:0009881: photoreceptor activity	2.04E-03
56	GO:0042802: identical protein binding	2.20E-03
57	GO:0005337: nucleoside transmembrane transporter activity	2.36E-03
58	GO:0003993: acid phosphatase activity	2.65E-03
59	GO:0071949: FAD binding	3.04E-03
60	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.04E-03
61	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.41E-03
62	GO:0008047: enzyme activator activity	3.79E-03
63	GO:0000049: tRNA binding	4.58E-03
64	GO:0004565: beta-galactosidase activity	5.00E-03
65	GO:0008081: phosphoric diester hydrolase activity	5.00E-03
66	GO:0004089: carbonate dehydratase activity	5.00E-03
67	GO:0031072: heat shock protein binding	5.00E-03
68	GO:0008266: poly(U) RNA binding	5.44E-03
69	GO:0015035: protein disulfide oxidoreductase activity	6.40E-03
70	GO:0004857: enzyme inhibitor activity	6.81E-03
71	GO:0022891: substrate-specific transmembrane transporter activity	8.82E-03
72	GO:0015144: carbohydrate transmembrane transporter activity	9.32E-03
73	GO:0003756: protein disulfide isomerase activity	9.35E-03
74	GO:0047134: protein-disulfide reductase activity	9.90E-03
75	GO:0005351: sugar:proton symporter activity	1.05E-02
76	GO:0008017: microtubule binding	1.13E-02
77	GO:0010181: FMN binding	1.16E-02
78	GO:0005355: glucose transmembrane transporter activity	1.16E-02
79	GO:0004791: thioredoxin-disulfide reductase activity	1.16E-02
80	GO:0016491: oxidoreductase activity	1.21E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.40E-02
82	GO:0016413: O-acetyltransferase activity	1.59E-02
83	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.93E-02
84	GO:0016787: hydrolase activity	2.51E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
86	GO:0050661: NADP binding	2.60E-02
87	GO:0004364: glutathione transferase activity	2.76E-02
88	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
89	GO:0003924: GTPase activity	3.06E-02
90	GO:0005198: structural molecule activity	3.08E-02
91	GO:0015293: symporter activity	3.08E-02
92	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.17E-02
93	GO:0051287: NAD binding	3.25E-02
94	GO:0009055: electron carrier activity	3.28E-02
95	GO:0051082: unfolded protein binding	4.51E-02
96	GO:0016887: ATPase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0009507: chloroplast	2.84E-32
5	GO:0009534: chloroplast thylakoid	2.95E-24
6	GO:0009535: chloroplast thylakoid membrane	7.30E-24
7	GO:0009579: thylakoid	1.16E-19
8	GO:0009941: chloroplast envelope	1.10E-17
9	GO:0009570: chloroplast stroma	2.58E-17
10	GO:0010287: plastoglobule	3.62E-15
11	GO:0009522: photosystem I	3.75E-10
12	GO:0030076: light-harvesting complex	1.60E-09
13	GO:0009517: PSII associated light-harvesting complex II	4.86E-08
14	GO:0009543: chloroplast thylakoid lumen	4.20E-07
15	GO:0009538: photosystem I reaction center	9.81E-07
16	GO:0009523: photosystem II	1.96E-06
17	GO:0048046: apoplast	5.30E-06
18	GO:0030095: chloroplast photosystem II	9.80E-06
19	GO:0031977: thylakoid lumen	2.16E-05
20	GO:0009783: photosystem II antenna complex	1.30E-04
21	GO:0009515: granal stacked thylakoid	1.30E-04
22	GO:0043036: starch grain	2.99E-04
23	GO:0010007: magnesium chelatase complex	4.92E-04
24	GO:0009654: photosystem II oxygen evolving complex	5.01E-04
25	GO:0005960: glycine cleavage complex	7.04E-04
26	GO:0009706: chloroplast inner membrane	8.26E-04
27	GO:0019898: extrinsic component of membrane	1.02E-03
28	GO:0016020: membrane	1.78E-03
29	GO:0031305: integral component of mitochondrial inner membrane	2.36E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.04E-03
31	GO:0008180: COP9 signalosome	3.04E-03
32	GO:0055028: cortical microtubule	3.79E-03
33	GO:0005740: mitochondrial envelope	3.79E-03
34	GO:0032040: small-subunit processome	4.58E-03
35	GO:0005578: proteinaceous extracellular matrix	5.00E-03
36	GO:0042651: thylakoid membrane	7.30E-03
37	GO:0005778: peroxisomal membrane	1.53E-02
38	GO:0009707: chloroplast outer membrane	2.00E-02
39	GO:0019005: SCF ubiquitin ligase complex	2.00E-02
40	GO:0016021: integral component of membrane	2.30E-02
41	GO:0000502: proteasome complex	3.51E-02
42	GO:0009536: plastid	3.94E-02