Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G27530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
3GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
4GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
5GO:0034050: host programmed cell death induced by symbiont0.00E+00
6GO:0046487: glyoxylate metabolic process0.00E+00
7GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
8GO:1990258: histone glutamine methylation0.00E+00
9GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
10GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
11GO:0006412: translation5.15E-158
12GO:0042254: ribosome biogenesis1.13E-61
13GO:0000027: ribosomal large subunit assembly5.51E-14
14GO:0006626: protein targeting to mitochondrion4.40E-11
15GO:0000028: ribosomal small subunit assembly5.42E-07
16GO:0006364: rRNA processing2.26E-06
17GO:0006413: translational initiation3.57E-06
18GO:0009967: positive regulation of signal transduction1.19E-05
19GO:0030150: protein import into mitochondrial matrix2.21E-05
20GO:0002181: cytoplasmic translation4.00E-05
21GO:1902626: assembly of large subunit precursor of preribosome4.00E-05
22GO:0000387: spliceosomal snRNP assembly7.70E-05
23GO:0010162: seed dormancy process9.86E-05
24GO:0000398: mRNA splicing, via spliceosome1.00E-04
25GO:0009735: response to cytokinin1.37E-04
26GO:0042274: ribosomal small subunit biogenesis1.48E-04
27GO:0031167: rRNA methylation2.26E-04
28GO:0045040: protein import into mitochondrial outer membrane3.19E-04
29GO:0000245: spliceosomal complex assembly4.25E-04
30GO:0016444: somatic cell DNA recombination4.25E-04
31GO:0009955: adaxial/abaxial pattern specification4.25E-04
32GO:0031118: rRNA pseudouridine synthesis5.20E-04
33GO:0015801: aromatic amino acid transport5.20E-04
34GO:0035266: meristem growth5.20E-04
35GO:0030490: maturation of SSU-rRNA5.20E-04
36GO:0006434: seryl-tRNA aminoacylation5.20E-04
37GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.20E-04
38GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.20E-04
39GO:0019877: diaminopimelate biosynthetic process5.20E-04
40GO:0032365: intracellular lipid transport5.20E-04
41GO:0006407: rRNA export from nucleus5.20E-04
42GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process5.20E-04
43GO:0031120: snRNA pseudouridine synthesis5.20E-04
44GO:0000469: cleavage involved in rRNA processing5.20E-04
45GO:0008033: tRNA processing7.64E-04
46GO:0008283: cell proliferation8.25E-04
47GO:0001510: RNA methylation8.29E-04
48GO:0010197: polar nucleus fusion8.40E-04
49GO:0045905: positive regulation of translational termination1.12E-03
50GO:0009156: ribonucleoside monophosphate biosynthetic process1.12E-03
51GO:2000072: regulation of defense response to fungus, incompatible interaction1.12E-03
52GO:0045901: positive regulation of translational elongation1.12E-03
53GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.12E-03
54GO:0048569: post-embryonic animal organ development1.12E-03
55GO:0006452: translational frameshifting1.12E-03
56GO:0015786: UDP-glucose transport1.12E-03
57GO:0045859: regulation of protein kinase activity1.12E-03
58GO:0006820: anion transport1.80E-03
59GO:0009150: purine ribonucleotide metabolic process1.83E-03
60GO:0015783: GDP-fucose transport1.83E-03
61GO:0010476: gibberellin mediated signaling pathway1.83E-03
62GO:0042256: mature ribosome assembly1.83E-03
63GO:0045039: protein import into mitochondrial inner membrane1.83E-03
64GO:0006446: regulation of translational initiation2.31E-03
65GO:0048467: gynoecium development2.31E-03
66GO:0006383: transcription from RNA polymerase III promoter2.66E-03
67GO:0046513: ceramide biosynthetic process2.66E-03
68GO:0007004: telomere maintenance via telomerase2.66E-03
69GO:0033617: mitochondrial respiratory chain complex IV assembly2.66E-03
70GO:0070301: cellular response to hydrogen peroxide2.66E-03
71GO:0006241: CTP biosynthetic process2.66E-03
72GO:0072334: UDP-galactose transmembrane transport2.66E-03
73GO:0006165: nucleoside diphosphate phosphorylation2.66E-03
74GO:0006228: UTP biosynthetic process2.66E-03
75GO:0006164: purine nucleotide biosynthetic process2.66E-03
76GO:0009855: determination of bilateral symmetry2.66E-03
77GO:0032981: mitochondrial respiratory chain complex I assembly2.66E-03
78GO:0009944: polarity specification of adaxial/abaxial axis3.21E-03
79GO:0009165: nucleotide biosynthetic process3.58E-03
80GO:0006183: GTP biosynthetic process3.58E-03
81GO:0042273: ribosomal large subunit biogenesis3.58E-03
82GO:0051205: protein insertion into membrane3.58E-03
83GO:0006334: nucleosome assembly3.90E-03
84GO:0007005: mitochondrion organization4.27E-03
85GO:0009793: embryo development ending in seed dormancy4.39E-03
86GO:0006461: protein complex assembly4.59E-03
87GO:1902183: regulation of shoot apical meristem development4.59E-03
88GO:0019408: dolichol biosynthetic process4.59E-03
89GO:0040007: growth4.66E-03
90GO:0071215: cellular response to abscisic acid stimulus4.66E-03
91GO:0009294: DNA mediated transformation4.66E-03
92GO:0006414: translational elongation5.05E-03
93GO:0001731: formation of translation preinitiation complex5.69E-03
94GO:0016070: RNA metabolic process5.69E-03
95GO:0000741: karyogamy5.69E-03
96GO:0006458: 'de novo' protein folding6.87E-03
97GO:0006635: fatty acid beta-oxidation7.93E-03
98GO:0080186: developmental vegetative growth8.14E-03
99GO:0009645: response to low light intensity stimulus8.14E-03
100GO:0001522: pseudouridine synthesis9.47E-03
101GO:0030968: endoplasmic reticulum unfolded protein response1.09E-02
102GO:0043562: cellular response to nitrogen levels1.09E-02
103GO:0001558: regulation of cell growth1.09E-02
104GO:0010204: defense response signaling pathway, resistance gene-independent1.09E-02
105GO:0006189: 'de novo' IMP biosynthetic process1.24E-02
106GO:0015780: nucleotide-sugar transport1.24E-02
107GO:0098656: anion transmembrane transport1.24E-02
108GO:0007338: single fertilization1.24E-02
109GO:0009245: lipid A biosynthetic process1.24E-02
110GO:0048507: meristem development1.24E-02
111GO:0042761: very long-chain fatty acid biosynthetic process1.39E-02
112GO:0010449: root meristem growth1.39E-02
113GO:0030422: production of siRNA involved in RNA interference1.55E-02
114GO:0006259: DNA metabolic process1.55E-02
115GO:0009870: defense response signaling pathway, resistance gene-dependent1.55E-02
116GO:0009845: seed germination1.56E-02
117GO:0010311: lateral root formation1.59E-02
118GO:0015031: protein transport1.62E-02
119GO:0010015: root morphogenesis1.72E-02
120GO:0006913: nucleocytoplasmic transport1.72E-02
121GO:0009089: lysine biosynthetic process via diaminopimelate1.72E-02
122GO:0000724: double-strand break repair via homologous recombination1.83E-02
123GO:0071365: cellular response to auxin stimulus1.90E-02
124GO:0006790: sulfur compound metabolic process1.90E-02
125GO:0012501: programmed cell death1.90E-02
126GO:2000012: regulation of auxin polar transport2.08E-02
127GO:0010102: lateral root morphogenesis2.08E-02
128GO:0090351: seedling development2.46E-02
129GO:0046686: response to cadmium ion2.47E-02
130GO:0009644: response to high light intensity2.68E-02
131GO:0009965: leaf morphogenesis2.78E-02
132GO:0006487: protein N-linked glycosylation2.86E-02
133GO:0009116: nucleoside metabolic process2.86E-02
134GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.00E-02
135GO:0010073: meristem maintenance3.07E-02
136GO:0051302: regulation of cell division3.07E-02
137GO:0003333: amino acid transmembrane transport3.28E-02
138GO:0061077: chaperone-mediated protein folding3.28E-02
139GO:0010584: pollen exine formation3.95E-02
140GO:0000413: protein peptidyl-prolyl isomerization4.42E-02
141GO:0016569: covalent chromatin modification4.46E-02
142GO:0009409: response to cold4.50E-02
143GO:0009553: embryo sac development4.59E-02
144GO:0009960: endosperm development4.66E-02
145GO:0010305: leaf vascular tissue pattern formation4.66E-02
RankGO TermAdjusted P value
1GO:1990259: histone-glutamine methyltransferase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0034513: box H/ACA snoRNA binding0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0003735: structural constituent of ribosome1.41E-192
6GO:0003729: mRNA binding1.23E-38
7GO:0019843: rRNA binding4.22E-17
8GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.32E-07
9GO:0003723: RNA binding2.98E-07
10GO:0030515: snoRNA binding3.03E-07
11GO:0005078: MAP-kinase scaffold activity1.19E-05
12GO:0015288: porin activity3.08E-05
13GO:0008649: rRNA methyltransferase activity4.00E-05
14GO:0003743: translation initiation factor activity6.41E-05
15GO:0003746: translation elongation factor activity7.20E-05
16GO:0001055: RNA polymerase II activity7.70E-05
17GO:0008097: 5S rRNA binding8.56E-05
18GO:0001054: RNA polymerase I activity1.23E-04
19GO:0001056: RNA polymerase III activity1.51E-04
20GO:0004407: histone deacetylase activity3.43E-04
21GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity5.20E-04
22GO:0035614: snRNA stem-loop binding5.20E-04
23GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase5.20E-04
24GO:0000824: inositol tetrakisphosphate 3-kinase activity5.20E-04
25GO:0004828: serine-tRNA ligase activity5.20E-04
26GO:0004679: AMP-activated protein kinase activity5.20E-04
27GO:0047326: inositol tetrakisphosphate 5-kinase activity5.20E-04
28GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity5.20E-04
29GO:0005080: protein kinase C binding5.20E-04
30GO:0043022: ribosome binding6.79E-04
31GO:0008308: voltage-gated anion channel activity8.29E-04
32GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.12E-03
33GO:0030619: U1 snRNA binding1.12E-03
34GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.12E-03
35GO:0050291: sphingosine N-acyltransferase activity1.12E-03
36GO:0015173: aromatic amino acid transmembrane transporter activity1.12E-03
37GO:0070034: telomerase RNA binding1.12E-03
38GO:0032934: sterol binding1.12E-03
39GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.12E-03
40GO:0035241: protein-arginine omega-N monomethyltransferase activity1.12E-03
41GO:0044183: protein binding involved in protein folding1.57E-03
42GO:0005457: GDP-fucose transmembrane transporter activity1.83E-03
43GO:0008469: histone-arginine N-methyltransferase activity1.83E-03
44GO:0015462: ATPase-coupled protein transmembrane transporter activity1.83E-03
45GO:0032947: protein complex scaffold1.83E-03
46GO:0015266: protein channel activity2.05E-03
47GO:0000166: nucleotide binding2.11E-03
48GO:0004550: nucleoside diphosphate kinase activity2.66E-03
49GO:0047627: adenylylsulfatase activity2.66E-03
50GO:0004749: ribose phosphate diphosphokinase activity2.66E-03
51GO:0005460: UDP-glucose transmembrane transporter activity2.66E-03
52GO:0005459: UDP-galactose transmembrane transporter activity4.59E-03
53GO:0045547: dehydrodolichyl diphosphate synthase activity4.59E-03
54GO:0004040: amidase activity4.59E-03
55GO:0005275: amine transmembrane transporter activity4.59E-03
56GO:0031369: translation initiation factor binding5.69E-03
57GO:0031177: phosphopantetheine binding5.69E-03
58GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity5.69E-03
59GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.75E-03
60GO:0019887: protein kinase regulator activity6.87E-03
61GO:0000035: acyl binding6.87E-03
62GO:0005338: nucleotide-sugar transmembrane transporter activity8.14E-03
63GO:0008235: metalloexopeptidase activity8.14E-03
64GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.47E-03
65GO:0008135: translation factor activity, RNA binding1.09E-02
66GO:0003678: DNA helicase activity1.24E-02
67GO:0000049: tRNA binding1.90E-02
68GO:0042393: histone binding2.19E-02
69GO:0051087: chaperone binding3.07E-02
70GO:0005216: ion channel activity3.07E-02
71GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.28E-02
72GO:0008514: organic anion transmembrane transporter activity3.95E-02
73GO:0051082: unfolded protein binding4.73E-02
74GO:0010181: FMN binding4.91E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0090661: box H/ACA telomerase RNP complex0.00E+00
3GO:0072589: box H/ACA scaRNP complex0.00E+00
4GO:0005832: chaperonin-containing T-complex0.00E+00
5GO:0005840: ribosome1.11E-133
6GO:0022625: cytosolic large ribosomal subunit7.65E-119
7GO:0022626: cytosolic ribosome1.69E-113
8GO:0022627: cytosolic small ribosomal subunit2.43E-84
9GO:0005730: nucleolus1.72E-49
10GO:0005829: cytosol4.68E-38
11GO:0005737: cytoplasm2.56E-36
12GO:0009506: plasmodesma1.15E-26
13GO:0015934: large ribosomal subunit7.42E-15
14GO:0015935: small ribosomal subunit1.64E-13
15GO:0005774: vacuolar membrane5.11E-13
16GO:0016020: membrane8.97E-12
17GO:0005773: vacuole3.26E-10
18GO:0005618: cell wall5.72E-10
19GO:0005742: mitochondrial outer membrane translocase complex9.07E-07
20GO:0015030: Cajal body2.17E-06
21GO:0005852: eukaryotic translation initiation factor 3 complex4.47E-06
22GO:0031428: box C/D snoRNP complex7.83E-06
23GO:0009507: chloroplast2.54E-05
24GO:0005853: eukaryotic translation elongation factor 1 complex4.00E-05
25GO:0034719: SMN-Sm protein complex4.00E-05
26GO:0046930: pore complex4.33E-05
27GO:0005736: DNA-directed RNA polymerase I complex5.86E-05
28GO:0005685: U1 snRNP5.86E-05
29GO:0005666: DNA-directed RNA polymerase III complex7.70E-05
30GO:0071011: precatalytic spliceosome7.70E-05
31GO:0005732: small nucleolar ribonucleoprotein complex8.76E-05
32GO:0005886: plasma membrane9.04E-05
33GO:0000418: DNA-directed RNA polymerase IV complex9.86E-05
34GO:0071013: catalytic step 2 spliceosome1.23E-04
35GO:0005682: U5 snRNP1.48E-04
36GO:0032040: small-subunit processome1.51E-04
37GO:0005665: DNA-directed RNA polymerase II, core complex1.51E-04
38GO:0019013: viral nucleocapsid1.83E-04
39GO:0005687: U4 snRNP2.26E-04
40GO:0097526: spliceosomal tri-snRNP complex2.26E-04
41GO:0005681: spliceosomal complex3.18E-04
42GO:0005758: mitochondrial intermembrane space3.43E-04
43GO:0005689: U12-type spliceosomal complex4.25E-04
44GO:0005741: mitochondrial outer membrane4.44E-04
45GO:0005743: mitochondrial inner membrane5.06E-04
46GO:0030686: 90S preribosome5.20E-04
47GO:0031359: integral component of chloroplast outer membrane5.46E-04
48GO:0005744: mitochondrial inner membrane presequence translocase complex6.24E-04
49GO:0071010: prespliceosome1.12E-03
50GO:0005686: U2 snRNP1.36E-03
51GO:0034715: pICln-Sm protein complex1.83E-03
52GO:0031429: box H/ACA snoRNP complex2.66E-03
53GO:0000419: DNA-directed RNA polymerase V complex2.89E-03
54GO:0000974: Prp19 complex5.69E-03
55GO:0000243: commitment complex5.69E-03
56GO:0016282: eukaryotic 43S preinitiation complex5.69E-03
57GO:0016272: prefoldin complex6.87E-03
58GO:0033290: eukaryotic 48S preinitiation complex6.87E-03
59GO:0005622: intracellular7.38E-03
60GO:0005834: heterotrimeric G-protein complex9.07E-03
61GO:0071004: U2-type prespliceosome9.47E-03
62GO:0005688: U6 snRNP9.47E-03
63GO:0046540: U4/U6 x U5 tri-snRNP complex1.09E-02
64GO:0030529: intracellular ribonucleoprotein complex1.15E-02
65GO:0016604: nuclear body1.39E-02
66GO:0048471: perinuclear region of cytoplasm1.72E-02
67GO:0031307: integral component of mitochondrial outer membrane1.90E-02
68GO:0070469: respiratory chain3.07E-02
69GO:0009536: plastid3.76E-02
70GO:0005747: mitochondrial respiratory chain complex I4.07E-02
71GO:0009706: chloroplast inner membrane4.73E-02
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Gene type



Gene DE type