co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0006412: translation	5.67E-18
7	GO:0015979: photosynthesis	7.27E-17
8	GO:0032544: plastid translation	1.88E-15
9	GO:0009735: response to cytokinin	1.74E-14
10	GO:0042254: ribosome biogenesis	6.83E-12
11	GO:0009409: response to cold	5.97E-09
12	GO:0019464: glycine decarboxylation via glycine cleavage system	1.23E-07
13	GO:0009773: photosynthetic electron transport in photosystem I	1.56E-07
14	GO:0043085: positive regulation of catalytic activity	1.16E-05
15	GO:0010027: thylakoid membrane organization	1.50E-05
16	GO:0009658: chloroplast organization	1.79E-05
17	GO:0015995: chlorophyll biosynthetic process	2.10E-05
18	GO:0045727: positive regulation of translation	2.61E-05
19	GO:0010196: nonphotochemical quenching	1.15E-04
20	GO:0009645: response to low light intensity stimulus	1.15E-04
21	GO:0019252: starch biosynthetic process	1.40E-04
22	GO:0005978: glycogen biosynthetic process	1.48E-04
23	GO:1902458: positive regulation of stomatal opening	1.86E-04
24	GO:0000023: maltose metabolic process	1.86E-04
25	GO:0043489: RNA stabilization	1.86E-04
26	GO:0010206: photosystem II repair	2.25E-04
27	GO:0042742: defense response to bacterium	3.41E-04
28	GO:0045454: cell redox homeostasis	3.53E-04
29	GO:0018119: peptidyl-cysteine S-nitrosylation	3.66E-04
30	GO:0009817: defense response to fungus, incompatible interaction	3.68E-04
31	GO:0007154: cell communication	4.19E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.19E-04
33	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.19E-04
34	GO:0010270: photosystem II oxygen evolving complex assembly	4.19E-04
35	GO:0009629: response to gravity	4.19E-04
36	GO:0019388: galactose catabolic process	4.19E-04
37	GO:0045037: protein import into chloroplast stroma	4.20E-04
38	GO:0009767: photosynthetic electron transport chain	4.78E-04
39	GO:0034599: cellular response to oxidative stress	5.29E-04
40	GO:0006000: fructose metabolic process	6.84E-04
41	GO:0010581: regulation of starch biosynthetic process	6.84E-04
42	GO:0006518: peptide metabolic process	6.84E-04
43	GO:0055114: oxidation-reduction process	7.43E-04
44	GO:0009768: photosynthesis, light harvesting in photosystem I	8.15E-04
45	GO:0061077: chaperone-mediated protein folding	8.93E-04
46	GO:0009590: detection of gravity	9.77E-04
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.77E-04
48	GO:0051085: chaperone mediated protein folding requiring cofactor	9.77E-04
49	GO:0006241: CTP biosynthetic process	9.77E-04
50	GO:0006165: nucleoside diphosphate phosphorylation	9.77E-04
51	GO:0006228: UTP biosynthetic process	9.77E-04
52	GO:0010731: protein glutathionylation	9.77E-04
53	GO:0010021: amylopectin biosynthetic process	1.29E-03
54	GO:0010037: response to carbon dioxide	1.29E-03
55	GO:0006808: regulation of nitrogen utilization	1.29E-03
56	GO:0015976: carbon utilization	1.29E-03
57	GO:0009765: photosynthesis, light harvesting	1.29E-03
58	GO:0006109: regulation of carbohydrate metabolic process	1.29E-03
59	GO:0006183: GTP biosynthetic process	1.29E-03
60	GO:2000122: negative regulation of stomatal complex development	1.29E-03
61	GO:0006546: glycine catabolic process	1.29E-03
62	GO:0006662: glycerol ether metabolic process	1.44E-03
63	GO:0045038: protein import into chloroplast thylakoid membrane	1.65E-03
64	GO:0006461: protein complex assembly	1.65E-03
65	GO:0006544: glycine metabolic process	1.65E-03
66	GO:0006563: L-serine metabolic process	2.03E-03
67	GO:0000470: maturation of LSU-rRNA	2.03E-03
68	GO:0006828: manganese ion transport	2.03E-03
69	GO:0009955: adaxial/abaxial pattern specification	2.43E-03
70	GO:0042026: protein refolding	2.43E-03
71	GO:1901259: chloroplast rRNA processing	2.43E-03
72	GO:0006810: transport	2.82E-03
73	GO:0007623: circadian rhythm	3.09E-03
74	GO:0018298: protein-chromophore linkage	3.31E-03
75	GO:2000070: regulation of response to water deprivation	3.32E-03
76	GO:0006002: fructose 6-phosphate metabolic process	3.80E-03
77	GO:0015996: chlorophyll catabolic process	3.80E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.80E-03
79	GO:0009657: plastid organization	3.80E-03
80	GO:0019430: removal of superoxide radicals	3.80E-03
81	GO:0009853: photorespiration	4.19E-03
82	GO:0006783: heme biosynthetic process	4.30E-03
83	GO:0010205: photoinhibition	4.82E-03
84	GO:0035999: tetrahydrofolate interconversion	4.82E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	4.82E-03
86	GO:0006782: protoporphyrinogen IX biosynthetic process	5.36E-03
87	GO:0009644: response to high light intensity	5.83E-03
88	GO:0000272: polysaccharide catabolic process	5.92E-03
89	GO:0006816: calcium ion transport	5.92E-03
90	GO:0006415: translational termination	5.92E-03
91	GO:0005983: starch catabolic process	6.51E-03
92	GO:0006006: glucose metabolic process	7.11E-03
93	GO:0006094: gluconeogenesis	7.11E-03
94	GO:0005986: sucrose biosynthetic process	7.11E-03
95	GO:0010102: lateral root morphogenesis	7.11E-03
96	GO:0006364: rRNA processing	7.26E-03
97	GO:0010020: chloroplast fission	7.73E-03
98	GO:0019253: reductive pentose-phosphate cycle	7.73E-03
99	GO:0010207: photosystem II assembly	7.73E-03
100	GO:0005985: sucrose metabolic process	8.37E-03
101	GO:0006636: unsaturated fatty acid biosynthetic process	9.03E-03
102	GO:0006289: nucleotide-excision repair	9.71E-03
103	GO:0000027: ribosomal large subunit assembly	9.71E-03
104	GO:0006418: tRNA aminoacylation for protein translation	1.04E-02
105	GO:0007005: mitochondrion organization	1.19E-02
106	GO:0009411: response to UV	1.26E-02
107	GO:0042744: hydrogen peroxide catabolic process	1.48E-02
108	GO:0042631: cellular response to water deprivation	1.50E-02
109	GO:0009790: embryo development	1.52E-02
110	GO:0010182: sugar mediated signaling pathway	1.58E-02
111	GO:0000302: response to reactive oxygen species	1.83E-02
112	GO:0030163: protein catabolic process	2.01E-02
113	GO:0009627: systemic acquired resistance	2.58E-02
114	GO:0008219: cell death	2.88E-02
115	GO:0048481: plant ovule development	2.88E-02
116	GO:0010218: response to far red light	3.08E-02
117	GO:0009631: cold acclimation	3.19E-02
118	GO:0010119: regulation of stomatal movement	3.19E-02
119	GO:0046686: response to cadmium ion	3.33E-02
120	GO:0009637: response to blue light	3.40E-02
121	GO:0045087: innate immune response	3.40E-02
122	GO:0080167: response to karrikin	3.44E-02
123	GO:0042542: response to hydrogen peroxide	3.96E-02
124	GO:0010114: response to red light	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0019843: rRNA binding	4.83E-26
9	GO:0003735: structural constituent of ribosome	2.26E-20
10	GO:0008266: poly(U) RNA binding	4.59E-09
11	GO:0005528: FK506 binding	8.81E-07
12	GO:0004324: ferredoxin-NADP+ reductase activity	6.12E-06
13	GO:0008047: enzyme activator activity	8.96E-06
14	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.41E-05
15	GO:0003959: NADPH dehydrogenase activity	4.22E-05
16	GO:0051920: peroxiredoxin activity	8.69E-05
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.96E-05
18	GO:0004791: thioredoxin-disulfide reductase activity	1.26E-04
19	GO:0050662: coenzyme binding	1.26E-04
20	GO:0016209: antioxidant activity	1.48E-04
21	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.86E-04
22	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.86E-04
23	GO:0004853: uroporphyrinogen decarboxylase activity	1.86E-04
24	GO:0045485: omega-6 fatty acid desaturase activity	1.86E-04
25	GO:0009496: plastoquinol--plastocyanin reductase activity	1.86E-04
26	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.86E-04
27	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.86E-04
28	GO:0016168: chlorophyll binding	2.78E-04
29	GO:0010297: heteropolysaccharide binding	4.19E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	4.19E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.19E-04
32	GO:0008967: phosphoglycolate phosphatase activity	4.19E-04
33	GO:0004614: phosphoglucomutase activity	4.19E-04
34	GO:0016491: oxidoreductase activity	6.38E-04
35	GO:0031409: pigment binding	6.69E-04
36	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.84E-04
37	GO:0030267: glyoxylate reductase (NADP) activity	6.84E-04
38	GO:0004373: glycogen (starch) synthase activity	6.84E-04
39	GO:0017150: tRNA dihydrouridine synthase activity	6.84E-04
40	GO:0002161: aminoacyl-tRNA editing activity	6.84E-04
41	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	6.84E-04
42	GO:0004550: nucleoside diphosphate kinase activity	9.77E-04
43	GO:0043023: ribosomal large subunit binding	9.77E-04
44	GO:0016851: magnesium chelatase activity	9.77E-04
45	GO:0016149: translation release factor activity, codon specific	9.77E-04
46	GO:0047134: protein-disulfide reductase activity	1.24E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.29E-03
48	GO:0009011: starch synthase activity	1.29E-03
49	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.29E-03
50	GO:0004372: glycine hydroxymethyltransferase activity	1.65E-03
51	GO:0048038: quinone binding	1.77E-03
52	GO:0004130: cytochrome-c peroxidase activity	2.03E-03
53	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.43E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.43E-03
55	GO:0004602: glutathione peroxidase activity	2.43E-03
56	GO:0008236: serine-type peptidase activity	3.15E-03
57	GO:0004222: metalloendopeptidase activity	3.64E-03
58	GO:0003747: translation release factor activity	4.30E-03
59	GO:0005384: manganese ion transmembrane transporter activity	4.82E-03
60	GO:0004601: peroxidase activity	5.38E-03
61	GO:0044183: protein binding involved in protein folding	5.92E-03
62	GO:0000049: tRNA binding	6.51E-03
63	GO:0004089: carbonate dehydratase activity	7.11E-03
64	GO:0015095: magnesium ion transmembrane transporter activity	7.11E-03
65	GO:0031072: heat shock protein binding	7.11E-03
66	GO:0004022: alcohol dehydrogenase (NAD) activity	7.11E-03
67	GO:0004857: enzyme inhibitor activity	9.71E-03
68	GO:0051082: unfolded protein binding	1.03E-02
69	GO:0015035: protein disulfide oxidoreductase activity	1.07E-02
70	GO:0003723: RNA binding	1.20E-02
71	GO:0022891: substrate-specific transmembrane transporter activity	1.26E-02
72	GO:0004812: aminoacyl-tRNA ligase activity	1.42E-02
73	GO:0004252: serine-type endopeptidase activity	1.44E-02
74	GO:0005509: calcium ion binding	1.53E-02
75	GO:0008237: metallopeptidase activity	2.19E-02
76	GO:0005515: protein binding	2.34E-02
77	GO:0003729: mRNA binding	3.11E-02
78	GO:0004364: glutathione transferase activity	3.96E-02
79	GO:0051537: 2 iron, 2 sulfur cluster binding	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	7.88E-87
5	GO:0009941: chloroplast envelope	1.58E-63
6	GO:0009570: chloroplast stroma	1.04E-62
7	GO:0009579: thylakoid	3.20E-48
8	GO:0009535: chloroplast thylakoid membrane	5.76E-47
9	GO:0009534: chloroplast thylakoid	1.43E-44
10	GO:0005840: ribosome	1.57E-23
11	GO:0009543: chloroplast thylakoid lumen	1.45E-20
12	GO:0031977: thylakoid lumen	3.18E-16
13	GO:0010319: stromule	2.32E-14
14	GO:0010287: plastoglobule	2.51E-12
15	GO:0009706: chloroplast inner membrane	4.01E-08
16	GO:0030095: chloroplast photosystem II	4.03E-07
17	GO:0009654: photosystem II oxygen evolving complex	1.11E-06
18	GO:0009533: chloroplast stromal thylakoid	1.57E-06
19	GO:0048046: apoplast	1.63E-06
20	GO:0009538: photosystem I reaction center	2.41E-06
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.96E-06
22	GO:0019898: extrinsic component of membrane	5.88E-06
23	GO:0009295: nucleoid	1.18E-05
24	GO:0005960: glycine cleavage complex	1.41E-05
25	GO:0016020: membrane	1.47E-05
26	GO:0009508: plastid chromosome	1.84E-05
27	GO:0009523: photosystem II	1.40E-04
28	GO:0009782: photosystem I antenna complex	1.86E-04
29	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.19E-04
30	GO:0030093: chloroplast photosystem I	4.19E-04
31	GO:0000311: plastid large ribosomal subunit	4.20E-04
32	GO:0015934: large ribosomal subunit	4.45E-04
33	GO:0030076: light-harvesting complex	6.03E-04
34	GO:0009528: plastid inner membrane	6.84E-04
35	GO:0010007: magnesium chelatase complex	6.84E-04
36	GO:0015935: small ribosomal subunit	8.93E-04
37	GO:0009527: plastid outer membrane	1.29E-03
38	GO:0009517: PSII associated light-harvesting complex II	1.29E-03
39	GO:0031969: chloroplast membrane	1.38E-03
40	GO:0022625: cytosolic large ribosomal subunit	1.49E-03
41	GO:0009522: photosystem I	1.54E-03
42	GO:0009512: cytochrome b6f complex	1.65E-03
43	GO:0009536: plastid	1.97E-03
44	GO:0009501: amyloplast	3.32E-03
45	GO:0005763: mitochondrial small ribosomal subunit	4.30E-03
46	GO:0042644: chloroplast nucleoid	4.30E-03
47	GO:0022626: cytosolic ribosome	5.57E-03
48	GO:0042651: thylakoid membrane	1.04E-02
49	GO:0009532: plastid stroma	1.11E-02
50	GO:0030529: intracellular ribonucleoprotein complex	2.38E-02
51	GO:0009707: chloroplast outer membrane	2.88E-02