co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G26060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0046085: adenosine metabolic process	0.00E+00
3	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
4	GO:0000740: nuclear membrane fusion	0.00E+00
5	GO:0045740: positive regulation of DNA replication	0.00E+00
6	GO:0048870: cell motility	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0006412: translation	6.75E-13
9	GO:0042254: ribosome biogenesis	5.98E-07
10	GO:0006511: ubiquitin-dependent protein catabolic process	5.20E-06
11	GO:0000027: ribosomal large subunit assembly	2.09E-04
12	GO:0009240: isopentenyl diphosphate biosynthetic process	4.07E-04
13	GO:0043407: negative regulation of MAP kinase activity	4.07E-04
14	GO:0031468: nuclear envelope reassembly	4.07E-04
15	GO:0000066: mitochondrial ornithine transport	4.07E-04
16	GO:2001006: regulation of cellulose biosynthetic process	4.07E-04
17	GO:0000028: ribosomal small subunit assembly	4.76E-04
18	GO:0009245: lipid A biosynthetic process	6.96E-04
19	GO:0000387: spliceosomal snRNP assembly	8.21E-04
20	GO:0010267: production of ta-siRNAs involved in RNA interference	8.21E-04
21	GO:0006452: translational frameshifting	8.83E-04
22	GO:0010198: synergid death	8.83E-04
23	GO:0007163: establishment or maintenance of cell polarity	8.83E-04
24	GO:1901703: protein localization involved in auxin polar transport	8.83E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	8.83E-04
26	GO:0045905: positive regulation of translational termination	8.83E-04
27	GO:0071668: plant-type cell wall assembly	8.83E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.83E-04
29	GO:0045901: positive regulation of translational elongation	8.83E-04
30	GO:0006420: arginyl-tRNA aminoacylation	8.83E-04
31	GO:0006626: protein targeting to mitochondrion	1.42E-03
32	GO:0010102: lateral root morphogenesis	1.42E-03
33	GO:0010452: histone H3-K36 methylation	1.43E-03
34	GO:1902626: assembly of large subunit precursor of preribosome	1.43E-03
35	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	1.43E-03
36	GO:0034051: negative regulation of plant-type hypersensitive response	1.43E-03
37	GO:0008333: endosome to lysosome transport	1.43E-03
38	GO:1904278: positive regulation of wax biosynthetic process	1.43E-03
39	GO:0046417: chorismate metabolic process	1.43E-03
40	GO:0045793: positive regulation of cell size	1.43E-03
41	GO:0006760: folic acid-containing compound metabolic process	1.43E-03
42	GO:0034227: tRNA thio-modification	1.43E-03
43	GO:0060145: viral gene silencing in virus induced gene silencing	1.43E-03
44	GO:0000398: mRNA splicing, via spliceosome	1.57E-03
45	GO:0010039: response to iron ion	1.80E-03
46	GO:0006107: oxaloacetate metabolic process	2.07E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.07E-03
48	GO:1901332: negative regulation of lateral root development	2.07E-03
49	GO:0006168: adenine salvage	2.07E-03
50	GO:0009558: embryo sac cellularization	2.07E-03
51	GO:0006882: cellular zinc ion homeostasis	2.07E-03
52	GO:0032877: positive regulation of DNA endoreduplication	2.07E-03
53	GO:0006166: purine ribonucleoside salvage	2.07E-03
54	GO:0051085: chaperone mediated protein folding requiring cofactor	2.07E-03
55	GO:0006406: mRNA export from nucleus	2.22E-03
56	GO:0006289: nucleotide-excision repair	2.22E-03
57	GO:0006487: protein N-linked glycosylation	2.22E-03
58	GO:0009116: nucleoside metabolic process	2.22E-03
59	GO:0006414: translational elongation	2.24E-03
60	GO:0010387: COP9 signalosome assembly	2.78E-03
61	GO:0071249: cellular response to nitrate	2.78E-03
62	GO:0009165: nucleotide biosynthetic process	2.78E-03
63	GO:0009755: hormone-mediated signaling pathway	2.78E-03
64	GO:0051781: positive regulation of cell division	2.78E-03
65	GO:0016226: iron-sulfur cluster assembly	2.95E-03
66	GO:0006012: galactose metabolic process	3.22E-03
67	GO:0030041: actin filament polymerization	3.56E-03
68	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.56E-03
69	GO:0044209: AMP salvage	3.56E-03
70	GO:0042147: retrograde transport, endosome to Golgi	3.80E-03
71	GO:0043248: proteasome assembly	4.41E-03
72	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	4.41E-03
73	GO:0006014: D-ribose metabolic process	4.41E-03
74	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	4.41E-03
75	GO:0051568: histone H3-K4 methylation	4.41E-03
76	GO:0006457: protein folding	5.31E-03
77	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	5.31E-03
78	GO:0000054: ribosomal subunit export from nucleus	5.31E-03
79	GO:0010090: trichome morphogenesis	6.23E-03
80	GO:0000338: protein deneddylation	6.28E-03
81	GO:0006826: iron ion transport	6.28E-03
82	GO:0000082: G1/S transition of mitotic cell cycle	6.28E-03
83	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.28E-03
84	GO:0032880: regulation of protein localization	6.28E-03
85	GO:0007050: cell cycle arrest	6.28E-03
86	GO:0006914: autophagy	6.64E-03
87	GO:0009690: cytokinin metabolic process	7.30E-03
88	GO:0006506: GPI anchor biosynthetic process	7.30E-03
89	GO:0045010: actin nucleation	7.30E-03
90	GO:0015031: protein transport	7.34E-03
91	GO:0022900: electron transport chain	8.38E-03
92	GO:0015996: chlorophyll catabolic process	8.38E-03
93	GO:0001510: RNA methylation	8.38E-03
94	GO:0010204: defense response signaling pathway, resistance gene-independent	8.38E-03
95	GO:0009808: lignin metabolic process	8.38E-03
96	GO:0010099: regulation of photomorphogenesis	8.38E-03
97	GO:0048589: developmental growth	9.51E-03
98	GO:0000902: cell morphogenesis	9.51E-03
99	GO:0071577: zinc II ion transmembrane transport	1.07E-02
100	GO:0010311: lateral root formation	1.09E-02
101	GO:0046686: response to cadmium ion	1.13E-02
102	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.19E-02
103	GO:0043069: negative regulation of programmed cell death	1.19E-02
104	GO:0045036: protein targeting to chloroplast	1.19E-02
105	GO:0016441: posttranscriptional gene silencing	1.19E-02
106	GO:0048527: lateral root development	1.20E-02
107	GO:0010043: response to zinc ion	1.20E-02
108	GO:0009073: aromatic amino acid family biosynthetic process	1.32E-02
109	GO:0016485: protein processing	1.32E-02
110	GO:0010015: root morphogenesis	1.32E-02
111	GO:0007623: circadian rhythm	1.33E-02
112	GO:0034599: cellular response to oxidative stress	1.38E-02
113	GO:0010152: pollen maturation	1.46E-02
114	GO:0016925: protein sumoylation	1.46E-02
115	GO:0006839: mitochondrial transport	1.50E-02
116	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.53E-02
117	GO:0006108: malate metabolic process	1.59E-02
118	GO:0006807: nitrogen compound metabolic process	1.59E-02
119	GO:0048467: gynoecium development	1.74E-02
120	GO:0002237: response to molecule of bacterial origin	1.74E-02
121	GO:0010020: chloroplast fission	1.74E-02
122	GO:0006446: regulation of translational initiation	1.74E-02
123	GO:0007030: Golgi organization	1.88E-02
124	GO:0009965: leaf morphogenesis	1.92E-02
125	GO:0010025: wax biosynthetic process	2.04E-02
126	GO:0042753: positive regulation of circadian rhythm	2.04E-02
127	GO:0034976: response to endoplasmic reticulum stress	2.04E-02
128	GO:2000377: regulation of reactive oxygen species metabolic process	2.19E-02
129	GO:0009585: red, far-red light phototransduction	2.30E-02
130	GO:0008299: isoprenoid biosynthetic process	2.35E-02
131	GO:0016575: histone deacetylation	2.35E-02
132	GO:0010073: meristem maintenance	2.35E-02
133	GO:0051603: proteolysis involved in cellular protein catabolic process	2.38E-02
134	GO:0061077: chaperone-mediated protein folding	2.51E-02
135	GO:0010431: seed maturation	2.51E-02
136	GO:0007005: mitochondrion organization	2.68E-02
137	GO:0009294: DNA mediated transformation	2.85E-02
138	GO:0048443: stamen development	3.03E-02
139	GO:0019722: calcium-mediated signaling	3.03E-02
140	GO:0010089: xylem development	3.03E-02
141	GO:0016569: covalent chromatin modification	3.08E-02
142	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.21E-02
143	GO:0006396: RNA processing	3.37E-02
144	GO:0080022: primary root development	3.39E-02
145	GO:0000413: protein peptidyl-prolyl isomerization	3.39E-02
146	GO:0006606: protein import into nucleus	3.39E-02
147	GO:0015991: ATP hydrolysis coupled proton transport	3.39E-02
148	GO:0051726: regulation of cell cycle	3.47E-02
149	GO:0010154: fruit development	3.58E-02
150	GO:0006662: glycerol ether metabolic process	3.58E-02
151	GO:0010197: polar nucleus fusion	3.58E-02
152	GO:0010182: sugar mediated signaling pathway	3.58E-02
153	GO:0061025: membrane fusion	3.77E-02
154	GO:0045454: cell redox homeostasis	3.78E-02
155	GO:0006886: intracellular protein transport	3.92E-02
156	GO:0048825: cotyledon development	3.96E-02
157	GO:0009749: response to glucose	3.96E-02
158	GO:0080156: mitochondrial mRNA modification	4.15E-02
159	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.15E-02
160	GO:0010193: response to ozone	4.15E-02
161	GO:0031047: gene silencing by RNA	4.35E-02
162	GO:0009630: gravitropism	4.35E-02
163	GO:0016042: lipid catabolic process	4.71E-02
164	GO:0009408: response to heat	4.88E-02
165	GO:0010286: heat acclimation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	4.74E-21
4	GO:0004298: threonine-type endopeptidase activity	2.90E-16
5	GO:0008233: peptidase activity	1.27E-06
6	GO:0003729: mRNA binding	3.40E-05
7	GO:0004576: oligosaccharyl transferase activity	9.87E-05
8	GO:0010011: auxin binding	9.87E-05
9	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.53E-04
10	GO:0031177: phosphopantetheine binding	2.19E-04
11	GO:0000035: acyl binding	2.94E-04
12	GO:0033549: MAP kinase phosphatase activity	4.07E-04
13	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	4.07E-04
14	GO:0019707: protein-cysteine S-acyltransferase activity	4.07E-04
15	GO:0102293: pheophytinase b activity	4.07E-04
16	GO:0030941: chloroplast targeting sequence binding	4.07E-04
17	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.76E-04
18	GO:0004034: aldose 1-epimerase activity	4.76E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.96E-04
20	GO:0008137: NADH dehydrogenase (ubiquinone) activity	6.92E-04
21	GO:1990585: hydroxyproline O-arabinosyltransferase activity	8.83E-04
22	GO:0004106: chorismate mutase activity	8.83E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	8.83E-04
24	GO:0004826: phenylalanine-tRNA ligase activity	8.83E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.83E-04
26	GO:0047746: chlorophyllase activity	8.83E-04
27	GO:0004814: arginine-tRNA ligase activity	8.83E-04
28	GO:0031072: heat shock protein binding	1.42E-03
29	GO:0005047: signal recognition particle binding	1.43E-03
30	GO:0032403: protein complex binding	1.43E-03
31	GO:0008649: rRNA methyltransferase activity	1.43E-03
32	GO:0008430: selenium binding	1.43E-03
33	GO:0003999: adenine phosphoribosyltransferase activity	2.07E-03
34	GO:0008097: 5S rRNA binding	2.07E-03
35	GO:0004749: ribose phosphate diphosphokinase activity	2.07E-03
36	GO:0003746: translation elongation factor activity	2.08E-03
37	GO:0043130: ubiquitin binding	2.22E-03
38	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.78E-03
39	GO:0070628: proteasome binding	2.78E-03
40	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.78E-03
41	GO:0005515: protein binding	3.00E-03
42	GO:0008198: ferrous iron binding	3.56E-03
43	GO:0005496: steroid binding	3.56E-03
44	GO:0031386: protein tag	3.56E-03
45	GO:0031593: polyubiquitin binding	4.41E-03
46	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	4.41E-03
47	GO:0051117: ATPase binding	4.41E-03
48	GO:0004872: receptor activity	5.11E-03
49	GO:0004747: ribokinase activity	5.31E-03
50	GO:0019887: protein kinase regulator activity	5.31E-03
51	GO:0016788: hydrolase activity, acting on ester bonds	5.85E-03
52	GO:0022857: transmembrane transporter activity	6.12E-03
53	GO:0008235: metalloexopeptidase activity	6.28E-03
54	GO:0042162: telomeric DNA binding	6.28E-03
55	GO:0008143: poly(A) binding	6.28E-03
56	GO:0008320: protein transmembrane transporter activity	6.28E-03
57	GO:0043022: ribosome binding	7.30E-03
58	GO:0035064: methylated histone binding	7.30E-03
59	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	8.38E-03
60	GO:0015078: hydrogen ion transmembrane transporter activity	8.38E-03
61	GO:0008173: RNA methyltransferase activity	8.38E-03
62	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.51E-03
63	GO:0001055: RNA polymerase II activity	1.07E-02
64	GO:0047617: acyl-CoA hydrolase activity	1.07E-02
65	GO:0004864: protein phosphatase inhibitor activity	1.19E-02
66	GO:0008047: enzyme activator activity	1.19E-02
67	GO:0050897: cobalt ion binding	1.20E-02
68	GO:0003697: single-stranded DNA binding	1.32E-02
69	GO:0008794: arsenate reductase (glutaredoxin) activity	1.32E-02
70	GO:0008327: methyl-CpG binding	1.32E-02
71	GO:0001054: RNA polymerase I activity	1.32E-02
72	GO:0004177: aminopeptidase activity	1.32E-02
73	GO:0001056: RNA polymerase III activity	1.46E-02
74	GO:0000049: tRNA binding	1.46E-02
75	GO:0003725: double-stranded RNA binding	1.59E-02
76	GO:0000175: 3'-5'-exoribonuclease activity	1.59E-02
77	GO:0004175: endopeptidase activity	1.74E-02
78	GO:0043621: protein self-association	1.84E-02
79	GO:0003723: RNA binding	1.93E-02
80	GO:0004725: protein tyrosine phosphatase activity	2.04E-02
81	GO:0005528: FK506 binding	2.19E-02
82	GO:0003714: transcription corepressor activity	2.19E-02
83	GO:0005385: zinc ion transmembrane transporter activity	2.19E-02
84	GO:0004407: histone deacetylase activity	2.19E-02
85	GO:0003756: protein disulfide isomerase activity	3.03E-02
86	GO:0047134: protein-disulfide reductase activity	3.21E-02
87	GO:0051082: unfolded protein binding	3.27E-02
88	GO:0015035: protein disulfide oxidoreductase activity	3.37E-02
89	GO:0052689: carboxylic ester hydrolase activity	3.42E-02
90	GO:0008080: N-acetyltransferase activity	3.58E-02
91	GO:0046873: metal ion transmembrane transporter activity	3.58E-02
92	GO:0004791: thioredoxin-disulfide reductase activity	3.77E-02
93	GO:0016853: isomerase activity	3.77E-02
94	GO:0019843: rRNA binding	4.09E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.55E-02
96	GO:0003684: damaged DNA binding	4.76E-02
97	GO:0008565: protein transporter activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0005840: ribosome	4.83E-20
4	GO:0022626: cytosolic ribosome	4.71E-19
5	GO:0005839: proteasome core complex	2.90E-16
6	GO:0022625: cytosolic large ribosomal subunit	4.38E-16
7	GO:0005829: cytosol	4.49E-16
8	GO:0000502: proteasome complex	5.26E-14
9	GO:0019773: proteasome core complex, alpha-subunit complex	1.35E-13
10	GO:0005737: cytoplasm	8.22E-11
11	GO:0005730: nucleolus	2.52E-06
12	GO:0022627: cytosolic small ribosomal subunit	3.17E-05
13	GO:0005732: small nucleolar ribonucleoprotein complex	3.42E-05
14	GO:0071011: precatalytic spliceosome	4.37E-05
15	GO:0071013: catalytic step 2 spliceosome	7.14E-05
16	GO:0008250: oligosaccharyltransferase complex	1.53E-04
17	GO:0030904: retromer complex	2.19E-04
18	GO:0005774: vacuolar membrane	2.86E-04
19	GO:0019774: proteasome core complex, beta-subunit complex	4.07E-04
20	GO:0005662: DNA replication factor A complex	4.07E-04
21	GO:0000421: autophagosome membrane	4.76E-04
22	GO:0005759: mitochondrial matrix	5.25E-04
23	GO:0005697: telomerase holoenzyme complex	8.83E-04
24	GO:0005747: mitochondrial respiratory chain complex I	1.00E-03
25	GO:0019013: viral nucleocapsid	1.42E-03
26	GO:0000439: core TFIIH complex	1.43E-03
27	GO:0034719: SMN-Sm protein complex	1.43E-03
28	GO:0005838: proteasome regulatory particle	1.43E-03
29	GO:0005853: eukaryotic translation elongation factor 1 complex	1.43E-03
30	GO:1990726: Lsm1-7-Pat1 complex	2.07E-03
31	GO:0005956: protein kinase CK2 complex	2.07E-03
32	GO:0005758: mitochondrial intermembrane space	2.22E-03
33	GO:0070469: respiratory chain	2.46E-03
34	GO:0016593: Cdc73/Paf1 complex	2.78E-03
35	GO:0005682: U5 snRNP	2.78E-03
36	GO:0000445: THO complex part of transcription export complex	2.78E-03
37	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.78E-03
38	GO:0005773: vacuole	2.87E-03
39	GO:0031410: cytoplasmic vesicle	2.95E-03
40	GO:0000178: exosome (RNase complex)	3.56E-03
41	GO:0005687: U4 snRNP	3.56E-03
42	GO:0097526: spliceosomal tri-snRNP complex	3.56E-03
43	GO:0031209: SCAR complex	4.41E-03
44	GO:0000974: Prp19 complex	4.41E-03
45	GO:0005771: multivesicular body	4.41E-03
46	GO:0032588: trans-Golgi network membrane	4.41E-03
47	GO:0005801: cis-Golgi network	5.31E-03
48	GO:0005689: U12-type spliceosomal complex	5.31E-03
49	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.28E-03
50	GO:0000347: THO complex	6.28E-03
51	GO:0031359: integral component of chloroplast outer membrane	6.28E-03
52	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	6.54E-03
53	GO:0005688: U6 snRNP	7.30E-03
54	GO:0071004: U2-type prespliceosome	7.30E-03
55	GO:0046540: U4/U6 x U5 tri-snRNP complex	8.38E-03
56	GO:0005788: endoplasmic reticulum lumen	8.39E-03
57	GO:0016020: membrane	8.98E-03
58	GO:0005736: DNA-directed RNA polymerase I complex	9.51E-03
59	GO:0008180: COP9 signalosome	9.51E-03
60	GO:0005685: U1 snRNP	9.51E-03
61	GO:0005763: mitochondrial small ribosomal subunit	9.51E-03
62	GO:0005666: DNA-directed RNA polymerase III complex	1.07E-02
63	GO:0005686: U2 snRNP	1.19E-02
64	GO:0015934: large ribosomal subunit	1.20E-02
65	GO:0005743: mitochondrial inner membrane	1.28E-02
66	GO:0008541: proteasome regulatory particle, lid subcomplex	1.32E-02
67	GO:0005665: DNA-directed RNA polymerase II, core complex	1.46E-02
68	GO:0031902: late endosome membrane	1.57E-02
69	GO:0009508: plastid chromosome	1.59E-02
70	GO:0005856: cytoskeleton	1.92E-02
71	GO:0000419: DNA-directed RNA polymerase V complex	2.04E-02
72	GO:0045271: respiratory chain complex I	2.35E-02
73	GO:0015935: small ribosomal subunit	2.51E-02
74	GO:0005741: mitochondrial outer membrane	2.51E-02
75	GO:0005681: spliceosomal complex	2.72E-02
76	GO:0005622: intracellular	2.83E-02
77	GO:0009706: chloroplast inner membrane	3.27E-02
78	GO:0005623: cell	4.20E-02
79	GO:0071944: cell periphery	4.55E-02
80	GO:0032580: Golgi cisterna membrane	4.76E-02
81	GO:0009536: plastid	4.89E-02
82	GO:0009295: nucleoid	4.97E-02