co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0048507: meristem development	3.56E-06
5	GO:0010582: floral meristem determinacy	3.48E-04
6	GO:0040008: regulation of growth	3.55E-04
7	GO:0080181: lateral root branching	3.69E-04
8	GO:0005977: glycogen metabolic process	6.04E-04
9	GO:0005992: trehalose biosynthetic process	6.16E-04
10	GO:0009734: auxin-activated signaling pathway	6.74E-04
11	GO:0009826: unidimensional cell growth	7.07E-04
12	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	8.63E-04
13	GO:0009650: UV protection	8.63E-04
14	GO:0009740: gibberellic acid mediated signaling pathway	1.13E-03
15	GO:0009765: photosynthesis, light harvesting	1.14E-03
16	GO:0022622: root system development	1.14E-03
17	GO:0006552: leucine catabolic process	1.14E-03
18	GO:0010021: amylopectin biosynthetic process	1.14E-03
19	GO:0015979: photosynthesis	1.26E-03
20	GO:0009742: brassinosteroid mediated signaling pathway	1.31E-03
21	GO:0010158: abaxial cell fate specification	1.45E-03
22	GO:0032502: developmental process	1.56E-03
23	GO:1902456: regulation of stomatal opening	1.78E-03
24	GO:0003006: developmental process involved in reproduction	1.78E-03
25	GO:0006596: polyamine biosynthetic process	1.78E-03
26	GO:0048759: xylem vessel member cell differentiation	1.78E-03
27	GO:0009942: longitudinal axis specification	2.14E-03
28	GO:0010050: vegetative phase change	2.52E-03
29	GO:0022904: respiratory electron transport chain	2.52E-03
30	GO:0032880: regulation of protein localization	2.52E-03
31	GO:0070413: trehalose metabolism in response to stress	2.91E-03
32	GO:0009850: auxin metabolic process	2.91E-03
33	GO:0006605: protein targeting	2.91E-03
34	GO:0010492: maintenance of shoot apical meristem identity	2.91E-03
35	GO:0009827: plant-type cell wall modification	3.33E-03
36	GO:0007389: pattern specification process	3.33E-03
37	GO:0006098: pentose-phosphate shunt	3.77E-03
38	GO:0048589: developmental growth	3.77E-03
39	GO:0010205: photoinhibition	4.22E-03
40	GO:0009733: response to auxin	4.25E-03
41	GO:0009416: response to light stimulus	4.44E-03
42	GO:0009640: photomorphogenesis	4.45E-03
43	GO:0009926: auxin polar transport	4.45E-03
44	GO:0009299: mRNA transcription	4.69E-03
45	GO:0048829: root cap development	4.69E-03
46	GO:0006949: syncytium formation	4.69E-03
47	GO:0006913: nucleocytoplasmic transport	5.19E-03
48	GO:0009773: photosynthetic electron transport in photosystem I	5.19E-03
49	GO:0009750: response to fructose	5.19E-03
50	GO:0009664: plant-type cell wall organization	5.58E-03
51	GO:0010152: pollen maturation	5.69E-03
52	GO:2000012: regulation of auxin polar transport	6.22E-03
53	GO:0010628: positive regulation of gene expression	6.22E-03
54	GO:0018107: peptidyl-threonine phosphorylation	6.22E-03
55	GO:0009725: response to hormone	6.22E-03
56	GO:0006094: gluconeogenesis	6.22E-03
57	GO:0048467: gynoecium development	6.76E-03
58	GO:0010207: photosystem II assembly	6.76E-03
59	GO:0005975: carbohydrate metabolic process	7.19E-03
60	GO:0019853: L-ascorbic acid biosynthetic process	7.32E-03
61	GO:0010030: positive regulation of seed germination	7.32E-03
62	GO:0006874: cellular calcium ion homeostasis	9.09E-03
63	GO:0009768: photosynthesis, light harvesting in photosystem I	9.09E-03
64	GO:0003333: amino acid transmembrane transport	9.72E-03
65	GO:0048511: rhythmic process	9.72E-03
66	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.10E-02
67	GO:0009411: response to UV	1.10E-02
68	GO:0006012: galactose metabolic process	1.10E-02
69	GO:0048443: stamen development	1.17E-02
70	GO:0006284: base-excision repair	1.17E-02
71	GO:0009306: protein secretion	1.17E-02
72	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.24E-02
73	GO:0008284: positive regulation of cell proliferation	1.24E-02
74	GO:0007165: signal transduction	1.24E-02
75	GO:0042631: cellular response to water deprivation	1.31E-02
76	GO:0010087: phloem or xylem histogenesis	1.31E-02
77	GO:0010305: leaf vascular tissue pattern formation	1.38E-02
78	GO:0009958: positive gravitropism	1.38E-02
79	GO:0046323: glucose import	1.38E-02
80	GO:0009741: response to brassinosteroid	1.38E-02
81	GO:0042752: regulation of circadian rhythm	1.45E-02
82	GO:0009646: response to absence of light	1.45E-02
83	GO:0045490: pectin catabolic process	1.48E-02
84	GO:0009749: response to glucose	1.52E-02
85	GO:0019252: starch biosynthetic process	1.52E-02
86	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.60E-02
87	GO:0009739: response to gibberellin	1.65E-02
88	GO:0010583: response to cyclopentenone	1.67E-02
89	GO:0016032: viral process	1.67E-02
90	GO:0007166: cell surface receptor signaling pathway	1.69E-02
91	GO:0010252: auxin homeostasis	1.83E-02
92	GO:0009828: plant-type cell wall loosening	1.83E-02
93	GO:0001666: response to hypoxia	2.07E-02
94	GO:0010027: thylakoid membrane organization	2.07E-02
95	GO:0009627: systemic acquired resistance	2.24E-02
96	GO:0048573: photoperiodism, flowering	2.33E-02
97	GO:0016311: dephosphorylation	2.42E-02
98	GO:0018298: protein-chromophore linkage	2.51E-02
99	GO:0010218: response to far red light	2.69E-02
100	GO:0048527: lateral root development	2.78E-02
101	GO:0009910: negative regulation of flower development	2.78E-02
102	GO:0080167: response to karrikin	2.84E-02
103	GO:0006865: amino acid transport	2.87E-02
104	GO:0009637: response to blue light	2.97E-02
105	GO:0044550: secondary metabolite biosynthetic process	3.09E-02
106	GO:0006839: mitochondrial transport	3.26E-02
107	GO:0045892: negative regulation of transcription, DNA-templated	3.45E-02
108	GO:0010114: response to red light	3.55E-02
109	GO:0009744: response to sucrose	3.55E-02
110	GO:0006281: DNA repair	4.18E-02
111	GO:0048364: root development	4.36E-02
112	GO:0051603: proteolysis involved in cellular protein catabolic process	4.50E-02
113	GO:0006096: glycolytic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0010487: thermospermine synthase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
6	GO:0016768: spermine synthase activity	1.62E-04
7	GO:0004805: trehalose-phosphatase activity	2.60E-04
8	GO:0019156: isoamylase activity	3.69E-04
9	GO:0043425: bHLH transcription factor binding	3.69E-04
10	GO:0004180: carboxypeptidase activity	6.04E-04
11	GO:0016805: dipeptidase activity	6.04E-04
12	GO:0005354: galactose transmembrane transporter activity	8.63E-04
13	GO:0030570: pectate lyase activity	8.83E-04
14	GO:0010328: auxin influx transmembrane transporter activity	1.14E-03
15	GO:0010011: auxin binding	1.14E-03
16	GO:0008725: DNA-3-methyladenine glycosylase activity	1.45E-03
17	GO:0004332: fructose-bisphosphate aldolase activity	1.78E-03
18	GO:0042578: phosphoric ester hydrolase activity	1.78E-03
19	GO:0004556: alpha-amylase activity	1.78E-03
20	GO:0004462: lactoylglutathione lyase activity	1.78E-03
21	GO:0004033: aldo-keto reductase (NADP) activity	2.91E-03
22	GO:0003824: catalytic activity	4.08E-03
23	GO:0009672: auxin:proton symporter activity	4.22E-03
24	GO:0015020: glucuronosyltransferase activity	4.69E-03
25	GO:0004565: beta-galactosidase activity	6.22E-03
26	GO:0010329: auxin efflux transmembrane transporter activity	6.22E-03
27	GO:0008083: growth factor activity	6.76E-03
28	GO:0005217: intracellular ligand-gated ion channel activity	7.32E-03
29	GO:0004970: ionotropic glutamate receptor activity	7.32E-03
30	GO:0004871: signal transducer activity	7.38E-03
31	GO:0031409: pigment binding	7.90E-03
32	GO:0016829: lyase activity	1.16E-02
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.38E-02
34	GO:0005355: glucose transmembrane transporter activity	1.45E-02
35	GO:0016791: phosphatase activity	1.83E-02
36	GO:0016168: chlorophyll binding	2.16E-02
37	GO:0004721: phosphoprotein phosphatase activity	2.33E-02
38	GO:0008236: serine-type peptidase activity	2.42E-02
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.51E-02
40	GO:0005096: GTPase activator activity	2.60E-02
41	GO:0030246: carbohydrate binding	2.73E-02
42	GO:0030145: manganese ion binding	2.78E-02
43	GO:0003993: acid phosphatase activity	3.06E-02
44	GO:0051539: 4 iron, 4 sulfur cluster binding	3.26E-02
45	GO:0004185: serine-type carboxypeptidase activity	3.55E-02
46	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.67E-02
47	GO:0004722: protein serine/threonine phosphatase activity	3.73E-02
48	GO:0043621: protein self-association	3.76E-02
49	GO:0015293: symporter activity	3.86E-02
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.97E-02
51	GO:0015171: amino acid transmembrane transporter activity	4.72E-02
52	GO:0031625: ubiquitin protein ligase binding	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0009538: photosystem I reaction center	1.20E-04
5	GO:0009531: secondary cell wall	8.63E-04
6	GO:0009523: photosystem II	1.37E-03
7	GO:0009533: chloroplast stromal thylakoid	2.52E-03
8	GO:0031305: integral component of mitochondrial inner membrane	2.91E-03
9	GO:0009535: chloroplast thylakoid membrane	4.41E-03
10	GO:0005740: mitochondrial envelope	4.69E-03
11	GO:0009579: thylakoid	5.83E-03
12	GO:0009534: chloroplast thylakoid	5.92E-03
13	GO:0030095: chloroplast photosystem II	6.76E-03
14	GO:0030076: light-harvesting complex	7.32E-03
15	GO:0010287: plastoglobule	1.01E-02
16	GO:0009522: photosystem I	1.45E-02
17	GO:0005886: plasma membrane	1.53E-02
18	GO:0016020: membrane	2.29E-02
19	GO:0000151: ubiquitin ligase complex	2.51E-02
20	GO:0031225: anchored component of membrane	3.28E-02