co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:0051246: regulation of protein metabolic process	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
9	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
10	GO:0098586: cellular response to virus	0.00E+00
11	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
12	GO:0048564: photosystem I assembly	2.19E-08
13	GO:0080005: photosystem stoichiometry adjustment	1.89E-06
14	GO:0009657: plastid organization	4.18E-06
15	GO:0071482: cellular response to light stimulus	4.18E-06
16	GO:2001141: regulation of RNA biosynthetic process	1.60E-05
17	GO:0009658: chloroplast organization	2.34E-05
18	GO:0018298: protein-chromophore linkage	3.14E-05
19	GO:0016120: carotene biosynthetic process	4.73E-05
20	GO:0016123: xanthophyll biosynthetic process	4.73E-05
21	GO:0015979: photosynthesis	5.81E-05
22	GO:0006655: phosphatidylglycerol biosynthetic process	6.98E-05
23	GO:0010190: cytochrome b6f complex assembly	6.98E-05
24	GO:0009443: pyridoxal 5'-phosphate salvage	2.00E-04
25	GO:0033388: putrescine biosynthetic process from arginine	2.00E-04
26	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.00E-04
27	GO:0071277: cellular response to calcium ion	2.00E-04
28	GO:0031426: polycistronic mRNA processing	2.00E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	2.00E-04
30	GO:1990052: ER to chloroplast lipid transport	2.00E-04
31	GO:0071806: protein transmembrane transport	2.00E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.00E-04
33	GO:0071461: cellular response to redox state	2.00E-04
34	GO:0010362: negative regulation of anion channel activity by blue light	2.00E-04
35	GO:0019646: aerobic electron transport chain	2.00E-04
36	GO:0032544: plastid translation	2.04E-04
37	GO:0010027: thylakoid membrane organization	2.94E-04
38	GO:0006352: DNA-templated transcription, initiation	4.04E-04
39	GO:0034755: iron ion transmembrane transport	4.48E-04
40	GO:0006435: threonyl-tRNA aminoacylation	4.48E-04
41	GO:0048314: embryo sac morphogenesis	4.48E-04
42	GO:0030187: melatonin biosynthetic process	4.48E-04
43	GO:0000256: allantoin catabolic process	4.48E-04
44	GO:0009446: putrescine biosynthetic process	4.48E-04
45	GO:0080183: response to photooxidative stress	4.48E-04
46	GO:0006568: tryptophan metabolic process	4.48E-04
47	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.48E-04
48	GO:0046741: transport of virus in host, tissue to tissue	4.48E-04
49	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.48E-04
50	GO:0016024: CDP-diacylglycerol biosynthetic process	4.63E-04
51	GO:0009767: photosynthetic electron transport chain	5.25E-04
52	GO:0009405: pathogenesis	7.29E-04
53	GO:0006013: mannose metabolic process	7.29E-04
54	GO:0090391: granum assembly	7.29E-04
55	GO:0010136: ureide catabolic process	7.29E-04
56	GO:0051604: protein maturation	7.29E-04
57	GO:0009644: response to high light intensity	8.59E-04
58	GO:0006809: nitric oxide biosynthetic process	1.04E-03
59	GO:0006145: purine nucleobase catabolic process	1.04E-03
60	GO:0051016: barbed-end actin filament capping	1.04E-03
61	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.04E-03
62	GO:0046739: transport of virus in multicellular host	1.04E-03
63	GO:0050482: arachidonic acid secretion	1.04E-03
64	GO:0043572: plastid fission	1.04E-03
65	GO:0006986: response to unfolded protein	1.04E-03
66	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.04E-03
67	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.04E-03
68	GO:0071484: cellular response to light intensity	1.04E-03
69	GO:0051085: chaperone mediated protein folding requiring cofactor	1.04E-03
70	GO:0010239: chloroplast mRNA processing	1.04E-03
71	GO:0006364: rRNA processing	1.13E-03
72	GO:0006021: inositol biosynthetic process	1.38E-03
73	GO:0009902: chloroplast relocation	1.38E-03
74	GO:0009765: photosynthesis, light harvesting	1.38E-03
75	GO:0010117: photoprotection	1.76E-03
76	GO:0031365: N-terminal protein amino acid modification	1.76E-03
77	GO:0009791: post-embryonic development	1.82E-03
78	GO:0010193: response to ozone	1.95E-03
79	GO:0046855: inositol phosphate dephosphorylation	2.17E-03
80	GO:0009643: photosynthetic acclimation	2.17E-03
81	GO:0042549: photosystem II stabilization	2.17E-03
82	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-03
83	GO:0042372: phylloquinone biosynthetic process	2.60E-03
84	GO:0009645: response to low light intensity stimulus	3.06E-03
85	GO:0006401: RNA catabolic process	3.06E-03
86	GO:0048528: post-embryonic root development	3.06E-03
87	GO:0010196: nonphotochemical quenching	3.06E-03
88	GO:0015995: chlorophyll biosynthetic process	3.29E-03
89	GO:0009642: response to light intensity	3.55E-03
90	GO:0006402: mRNA catabolic process	3.55E-03
91	GO:0006605: protein targeting	3.55E-03
92	GO:0009704: de-etiolation	3.55E-03
93	GO:0000105: histidine biosynthetic process	3.55E-03
94	GO:0006644: phospholipid metabolic process	3.55E-03
95	GO:0017004: cytochrome complex assembly	4.06E-03
96	GO:0009821: alkaloid biosynthetic process	4.60E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.60E-03
98	GO:0048507: meristem development	4.60E-03
99	GO:0090333: regulation of stomatal closure	4.60E-03
100	GO:0006754: ATP biosynthetic process	4.60E-03
101	GO:0000373: Group II intron splicing	4.60E-03
102	GO:0009637: response to blue light	4.61E-03
103	GO:0055114: oxidation-reduction process	5.11E-03
104	GO:0031425: chloroplast RNA processing	5.15E-03
105	GO:0009638: phototropism	5.15E-03
106	GO:0045036: protein targeting to chloroplast	5.74E-03
107	GO:0006259: DNA metabolic process	5.74E-03
108	GO:0010114: response to red light	5.94E-03
109	GO:0006265: DNA topological change	6.34E-03
110	GO:0006415: translational termination	6.34E-03
111	GO:0006879: cellular iron ion homeostasis	6.34E-03
112	GO:0009773: photosynthetic electron transport in photosystem I	6.34E-03
113	GO:0006790: sulfur compound metabolic process	6.96E-03
114	GO:0006807: nitrogen compound metabolic process	7.61E-03
115	GO:0005986: sucrose biosynthetic process	7.61E-03
116	GO:0080167: response to karrikin	8.02E-03
117	GO:0010020: chloroplast fission	8.28E-03
118	GO:0010207: photosystem II assembly	8.28E-03
119	GO:0009793: embryo development ending in seed dormancy	8.36E-03
120	GO:0019853: L-ascorbic acid biosynthetic process	8.97E-03
121	GO:0090351: seedling development	8.97E-03
122	GO:0046854: phosphatidylinositol phosphorylation	8.97E-03
123	GO:0007017: microtubule-based process	1.12E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-02
125	GO:0006825: copper ion transport	1.12E-02
126	GO:0051302: regulation of cell division	1.12E-02
127	GO:0008299: isoprenoid biosynthetic process	1.12E-02
128	GO:0006396: RNA processing	1.18E-02
129	GO:0051321: meiotic cell cycle	1.19E-02
130	GO:0046686: response to cadmium ion	1.25E-02
131	GO:0016226: iron-sulfur cluster assembly	1.27E-02
132	GO:0016117: carotenoid biosynthetic process	1.52E-02
133	GO:0008033: tRNA processing	1.60E-02
134	GO:0000413: protein peptidyl-prolyl isomerization	1.60E-02
135	GO:0010118: stomatal movement	1.60E-02
136	GO:0007059: chromosome segregation	1.78E-02
137	GO:0006413: translational initiation	1.85E-02
138	GO:0008654: phospholipid biosynthetic process	1.87E-02
139	GO:0000302: response to reactive oxygen species	1.97E-02
140	GO:0007623: circadian rhythm	1.98E-02
141	GO:0016032: viral process	2.06E-02
142	GO:0007264: small GTPase mediated signal transduction	2.06E-02
143	GO:0010286: heat acclimation	2.35E-02
144	GO:0010468: regulation of gene expression	2.37E-02
145	GO:0009816: defense response to bacterium, incompatible interaction	2.66E-02
146	GO:0042128: nitrate assimilation	2.76E-02
147	GO:0009817: defense response to fungus, incompatible interaction	3.09E-02
148	GO:0009409: response to cold	3.13E-02
149	GO:0000160: phosphorelay signal transduction system	3.20E-02
150	GO:0009813: flavonoid biosynthetic process	3.20E-02
151	GO:0007568: aging	3.42E-02
152	GO:0000724: double-strand break repair via homologous recombination	3.54E-02
153	GO:0055085: transmembrane transport	3.65E-02
154	GO:0009853: photorespiration	3.65E-02
155	GO:0006457: protein folding	3.74E-02
156	GO:0046777: protein autophosphorylation	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
11	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
12	GO:0070402: NADPH binding	6.94E-06
13	GO:0001053: plastid sigma factor activity	2.94E-05
14	GO:0016987: sigma factor activity	2.94E-05
15	GO:0008080: N-acetyltransferase activity	1.30E-04
16	GO:0004008: copper-exporting ATPase activity	2.00E-04
17	GO:0003879: ATP phosphoribosyltransferase activity	2.00E-04
18	GO:0030941: chloroplast targeting sequence binding	2.00E-04
19	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.00E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.00E-04
21	GO:0035671: enone reductase activity	2.00E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.00E-04
23	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.00E-04
24	GO:0016168: chlorophyll binding	3.17E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	4.48E-04
26	GO:0004829: threonine-tRNA ligase activity	4.48E-04
27	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.48E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	4.48E-04
29	GO:0008934: inositol monophosphate 1-phosphatase activity	4.48E-04
30	GO:0032947: protein complex scaffold	7.29E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	7.29E-04
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.29E-04
33	GO:0050307: sucrose-phosphate phosphatase activity	7.29E-04
34	GO:0004751: ribose-5-phosphate isomerase activity	7.29E-04
35	GO:0016851: magnesium chelatase activity	1.04E-03
36	GO:0016149: translation release factor activity, codon specific	1.04E-03
37	GO:0009882: blue light photoreceptor activity	1.04E-03
38	GO:0048027: mRNA 5'-UTR binding	1.04E-03
39	GO:0022891: substrate-specific transmembrane transporter activity	1.16E-03
40	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.38E-03
41	GO:0043495: protein anchor	1.38E-03
42	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.38E-03
43	GO:0005319: lipid transporter activity	1.38E-03
44	GO:0051861: glycolipid binding	1.38E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.38E-03
46	GO:0008453: alanine-glyoxylate transaminase activity	1.38E-03
47	GO:0010181: FMN binding	1.70E-03
48	GO:0016853: isomerase activity	1.70E-03
49	GO:0004623: phospholipase A2 activity	1.76E-03
50	GO:0004605: phosphatidate cytidylyltransferase activity	2.17E-03
51	GO:0004559: alpha-mannosidase activity	2.60E-03
52	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.60E-03
53	GO:0016491: oxidoreductase activity	2.77E-03
54	GO:0019899: enzyme binding	3.06E-03
55	GO:0008235: metalloexopeptidase activity	3.06E-03
56	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-03
57	GO:0005375: copper ion transmembrane transporter activity	4.06E-03
58	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.06E-03
59	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.60E-03
60	GO:0003747: translation release factor activity	4.60E-03
61	GO:0045309: protein phosphorylated amino acid binding	5.15E-03
62	GO:0016844: strictosidine synthase activity	5.15E-03
63	GO:0005381: iron ion transmembrane transporter activity	5.15E-03
64	GO:0019904: protein domain specific binding	6.34E-03
65	GO:0004177: aminopeptidase activity	6.34E-03
66	GO:0051537: 2 iron, 2 sulfur cluster binding	6.43E-03
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.93E-03
68	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.61E-03
69	GO:0000155: phosphorelay sensor kinase activity	7.61E-03
70	GO:0000175: 3'-5'-exoribonuclease activity	7.61E-03
71	GO:0008233: peptidase activity	7.85E-03
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.01E-03
73	GO:0031409: pigment binding	9.68E-03
74	GO:0051536: iron-sulfur cluster binding	1.04E-02
75	GO:0003954: NADH dehydrogenase activity	1.04E-02
76	GO:0005528: FK506 binding	1.04E-02
77	GO:0051087: chaperone binding	1.12E-02
78	GO:0043424: protein histidine kinase binding	1.12E-02
79	GO:0004176: ATP-dependent peptidase activity	1.19E-02
80	GO:0003924: GTPase activity	1.32E-02
81	GO:0003727: single-stranded RNA binding	1.43E-02
82	GO:0009055: electron carrier activity	1.44E-02
83	GO:0048038: quinone binding	1.97E-02
84	GO:0004518: nuclease activity	2.06E-02
85	GO:0003743: translation initiation factor activity	2.32E-02
86	GO:0042802: identical protein binding	2.52E-02
87	GO:0008236: serine-type peptidase activity	2.98E-02
88	GO:0000287: magnesium ion binding	3.01E-02
89	GO:0050897: cobalt ion binding	3.42E-02
90	GO:0030145: manganese ion binding	3.42E-02
91	GO:0046872: metal ion binding	3.54E-02
92	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.65E-02
93	GO:0043621: protein self-association	4.62E-02
94	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.66E-47
2	GO:0009535: chloroplast thylakoid membrane	5.40E-27
3	GO:0009570: chloroplast stroma	2.15E-11
4	GO:0009941: chloroplast envelope	8.97E-11
5	GO:0009534: chloroplast thylakoid	1.16E-09
6	GO:0009543: chloroplast thylakoid lumen	1.29E-07
7	GO:0009579: thylakoid	1.86E-07
8	GO:0031977: thylakoid lumen	3.76E-06
9	GO:0031969: chloroplast membrane	4.14E-05
10	GO:0009654: photosystem II oxygen evolving complex	5.32E-05
11	GO:0009523: photosystem II	1.60E-04
12	GO:0009515: granal stacked thylakoid	2.00E-04
13	GO:0009782: photosystem I antenna complex	2.00E-04
14	GO:0008290: F-actin capping protein complex	4.48E-04
15	GO:0031304: intrinsic component of mitochondrial inner membrane	4.48E-04
16	GO:0030095: chloroplast photosystem II	5.92E-04
17	GO:0009528: plastid inner membrane	7.29E-04
18	GO:0010007: magnesium chelatase complex	7.29E-04
19	GO:0009526: plastid envelope	1.38E-03
20	GO:0030286: dynein complex	1.38E-03
21	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.38E-03
22	GO:0055035: plastid thylakoid membrane	1.76E-03
23	GO:0019898: extrinsic component of membrane	1.82E-03
24	GO:0010287: plastoglobule	2.17E-03
25	GO:0009295: nucleoid	2.50E-03
26	GO:0031359: integral component of chloroplast outer membrane	3.06E-03
27	GO:0009533: chloroplast stromal thylakoid	3.06E-03
28	GO:0009707: chloroplast outer membrane	3.65E-03
29	GO:0009539: photosystem II reaction center	4.06E-03
30	GO:0042644: chloroplast nucleoid	4.60E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.60E-03
32	GO:0009508: plastid chromosome	7.61E-03
33	GO:0030076: light-harvesting complex	8.97E-03
34	GO:0005875: microtubule associated complex	9.68E-03
35	GO:0042651: thylakoid membrane	1.12E-02
36	GO:0005759: mitochondrial matrix	1.80E-02
37	GO:0005778: peroxisomal membrane	2.35E-02
38	GO:0010319: stromule	2.35E-02
39	GO:0009536: plastid	2.71E-02
40	GO:0016021: integral component of membrane	3.03E-02