co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25605

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0009644: response to high light intensity	4.54E-06
8	GO:0010189: vitamin E biosynthetic process	1.63E-05
9	GO:0018298: protein-chromophore linkage	4.93E-05
10	GO:0031426: polycistronic mRNA processing	6.58E-05
11	GO:1990052: ER to chloroplast lipid transport	6.58E-05
12	GO:0006436: tryptophanyl-tRNA aminoacylation	6.58E-05
13	GO:0033388: putrescine biosynthetic process from arginine	6.58E-05
14	GO:0009853: photorespiration	7.09E-05
15	GO:0048314: embryo sac morphogenesis	1.59E-04
16	GO:0030187: melatonin biosynthetic process	1.59E-04
17	GO:0000256: allantoin catabolic process	1.59E-04
18	GO:0009446: putrescine biosynthetic process	1.59E-04
19	GO:0016122: xanthophyll metabolic process	1.59E-04
20	GO:0046741: transport of virus in host, tissue to tissue	1.59E-04
21	GO:0042853: L-alanine catabolic process	1.59E-04
22	GO:0009915: phloem sucrose loading	1.59E-04
23	GO:0042548: regulation of photosynthesis, light reaction	1.59E-04
24	GO:0015979: photosynthesis	1.85E-04
25	GO:0009768: photosynthesis, light harvesting in photosystem I	2.02E-04
26	GO:0010136: ureide catabolic process	2.69E-04
27	GO:0009405: pathogenesis	2.69E-04
28	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.90E-04
29	GO:0046739: transport of virus in multicellular host	3.90E-04
30	GO:0043572: plastid fission	3.90E-04
31	GO:0071484: cellular response to light intensity	3.90E-04
32	GO:0010239: chloroplast mRNA processing	3.90E-04
33	GO:0006145: purine nucleobase catabolic process	3.90E-04
34	GO:0051016: barbed-end actin filament capping	3.90E-04
35	GO:0009791: post-embryonic development	4.26E-04
36	GO:0006021: inositol biosynthetic process	5.20E-04
37	GO:0009765: photosynthesis, light harvesting	5.20E-04
38	GO:0015994: chlorophyll metabolic process	5.20E-04
39	GO:0010117: photoprotection	6.60E-04
40	GO:0016123: xanthophyll biosynthetic process	6.60E-04
41	GO:0016120: carotene biosynthetic process	6.60E-04
42	GO:0009643: photosynthetic acclimation	8.06E-04
43	GO:0042549: photosystem II stabilization	8.06E-04
44	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.06E-04
45	GO:0046855: inositol phosphate dephosphorylation	8.06E-04
46	GO:0071470: cellular response to osmotic stress	9.59E-04
47	GO:0009645: response to low light intensity stimulus	1.12E-03
48	GO:0048528: post-embryonic root development	1.12E-03
49	GO:0048564: photosystem I assembly	1.29E-03
50	GO:0009642: response to light intensity	1.29E-03
51	GO:0010114: response to red light	1.34E-03
52	GO:0009657: plastid organization	1.47E-03
53	GO:0031347: regulation of defense response	1.61E-03
54	GO:0048507: meristem development	1.65E-03
55	GO:0045036: protein targeting to chloroplast	2.05E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	2.26E-03
57	GO:0006790: sulfur compound metabolic process	2.48E-03
58	GO:0006807: nitrogen compound metabolic process	2.70E-03
59	GO:0010207: photosystem II assembly	2.93E-03
60	GO:0009266: response to temperature stimulus	2.93E-03
61	GO:0010020: chloroplast fission	2.93E-03
62	GO:0019853: L-ascorbic acid biosynthetic process	3.16E-03
63	GO:0046854: phosphatidylinositol phosphorylation	3.16E-03
64	GO:0009863: salicylic acid mediated signaling pathway	3.65E-03
65	GO:0055114: oxidation-reduction process	3.66E-03
66	GO:0046686: response to cadmium ion	3.89E-03
67	GO:0051302: regulation of cell division	3.90E-03
68	GO:0008299: isoprenoid biosynthetic process	3.90E-03
69	GO:0006418: tRNA aminoacylation for protein translation	3.90E-03
70	GO:0051321: meiotic cell cycle	4.17E-03
71	GO:0007623: circadian rhythm	4.34E-03
72	GO:0006012: galactose metabolic process	4.70E-03
73	GO:0016117: carotenoid biosynthetic process	5.26E-03
74	GO:0006457: protein folding	5.48E-03
75	GO:0008654: phospholipid biosynthetic process	6.45E-03
76	GO:0000302: response to reactive oxygen species	6.76E-03
77	GO:0016032: viral process	7.08E-03
78	GO:0009816: defense response to bacterium, incompatible interaction	9.08E-03
79	GO:0042128: nitrate assimilation	9.44E-03
80	GO:0015995: chlorophyll biosynthetic process	9.79E-03
81	GO:0048481: plant ovule development	1.05E-02
82	GO:0010218: response to far red light	1.13E-02
83	GO:0007568: aging	1.17E-02
84	GO:0000724: double-strand break repair via homologous recombination	1.20E-02
85	GO:0009637: response to blue light	1.24E-02
86	GO:0034599: cellular response to oxidative stress	1.28E-02
87	GO:0006631: fatty acid metabolic process	1.40E-02
88	GO:0009409: response to cold	1.42E-02
89	GO:0006364: rRNA processing	1.84E-02
90	GO:0006417: regulation of translation	1.98E-02
91	GO:0009735: response to cytokinin	2.00E-02
92	GO:0009553: embryo sac development	2.31E-02
93	GO:0006396: RNA processing	2.41E-02
94	GO:0009058: biosynthetic process	2.88E-02
95	GO:0010228: vegetative to reproductive phase transition of meristem	3.60E-02
96	GO:0010468: regulation of gene expression	3.95E-02
97	GO:0006979: response to oxidative stress	4.44E-02
98	GO:0009658: chloroplast organization	4.75E-02
99	GO:0042254: ribosome biogenesis	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
6	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
7	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
8	GO:0009976: tocopherol cyclase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0016853: isomerase activity	2.18E-07
13	GO:0008453: alanine-glyoxylate transaminase activity	4.38E-06
14	GO:0016168: chlorophyll binding	3.54E-05
15	GO:0004830: tryptophan-tRNA ligase activity	6.58E-05
16	GO:0030941: chloroplast targeting sequence binding	6.58E-05
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.58E-05
18	GO:0035671: enone reductase activity	6.58E-05
19	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	6.58E-05
20	GO:0052832: inositol monophosphate 3-phosphatase activity	1.59E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	1.59E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	1.59E-04
23	GO:0031409: pigment binding	1.62E-04
24	GO:0004751: ribose-5-phosphate isomerase activity	2.69E-04
25	GO:0070402: NADPH binding	2.69E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	2.69E-04
27	GO:0008080: N-acetyltransferase activity	3.70E-04
28	GO:0048027: mRNA 5'-UTR binding	3.90E-04
29	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.90E-04
30	GO:0016851: magnesium chelatase activity	3.90E-04
31	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.20E-04
32	GO:0005319: lipid transporter activity	5.20E-04
33	GO:0051861: glycolipid binding	5.20E-04
34	GO:0004605: phosphatidate cytidylyltransferase activity	8.06E-04
35	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.59E-04
36	GO:0004034: aldose 1-epimerase activity	1.29E-03
37	GO:0045309: protein phosphorylated amino acid binding	1.85E-03
38	GO:0019904: protein domain specific binding	2.26E-03
39	GO:0004176: ATP-dependent peptidase activity	4.17E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	4.70E-03
41	GO:0003727: single-stranded RNA binding	4.98E-03
42	GO:0004812: aminoacyl-tRNA ligase activity	5.26E-03
43	GO:0050897: cobalt ion binding	1.17E-02
44	GO:0030145: manganese ion binding	1.17E-02
45	GO:0009055: electron carrier activity	1.32E-02
46	GO:0016491: oxidoreductase activity	1.37E-02
47	GO:0051537: 2 iron, 2 sulfur cluster binding	1.57E-02
48	GO:0043621: protein self-association	1.57E-02
49	GO:0031625: ubiquitin protein ligase binding	1.98E-02
50	GO:0003779: actin binding	2.31E-02
51	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.82E-02
52	GO:0016829: lyase activity	2.93E-02
53	GO:0030170: pyridoxal phosphate binding	2.99E-02
54	GO:0005509: calcium ion binding	4.07E-02
55	GO:0005506: iron ion binding	4.34E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.04E-25
2	GO:0009535: chloroplast thylakoid membrane	2.73E-10
3	GO:0009534: chloroplast thylakoid	5.64E-08
4	GO:0009570: chloroplast stroma	7.65E-06
5	GO:0009941: chloroplast envelope	1.49E-05
6	GO:0009523: photosystem II	1.58E-05
7	GO:0009782: photosystem I antenna complex	6.58E-05
8	GO:0031969: chloroplast membrane	1.47E-04
9	GO:0008290: F-actin capping protein complex	1.59E-04
10	GO:0010007: magnesium chelatase complex	2.69E-04
11	GO:0010287: plastoglobule	3.24E-04
12	GO:0009707: chloroplast outer membrane	8.40E-04
13	GO:0009579: thylakoid	9.02E-04
14	GO:0031359: integral component of chloroplast outer membrane	1.12E-03
15	GO:0031977: thylakoid lumen	1.24E-03
16	GO:0042644: chloroplast nucleoid	1.65E-03
17	GO:0005747: mitochondrial respiratory chain complex I	2.18E-03
18	GO:0009543: chloroplast thylakoid lumen	3.15E-03
19	GO:0030076: light-harvesting complex	3.16E-03
20	GO:0042651: thylakoid membrane	3.90E-03
21	GO:0045271: respiratory chain complex I	3.90E-03
22	GO:0009654: photosystem II oxygen evolving complex	3.90E-03
23	GO:0009522: photosystem I	6.15E-03
24	GO:0019898: extrinsic component of membrane	6.45E-03
25	GO:0005778: peroxisomal membrane	8.06E-03
26	GO:0010319: stromule	8.06E-03
27	GO:0031966: mitochondrial membrane	1.75E-02
28	GO:0009706: chloroplast inner membrane	2.36E-02
29	GO:0005777: peroxisome	2.51E-02
30	GO:0005623: cell	2.82E-02
31	GO:0005759: mitochondrial matrix	3.26E-02
32	GO:0048046: apoplast	4.86E-02