co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0046294: formaldehyde catabolic process	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0010343: singlet oxygen-mediated programmed cell death	1.62E-07
6	GO:0006526: arginine biosynthetic process	2.60E-05
7	GO:0072387: flavin adenine dinucleotide metabolic process	5.18E-05
8	GO:0048438: floral whorl development	5.18E-05
9	GO:1901529: positive regulation of anion channel activity	1.27E-04
10	GO:0044419: interspecies interaction between organisms	1.27E-04
11	GO:0010617: circadian regulation of calcium ion oscillation	1.27E-04
12	GO:0099402: plant organ development	1.27E-04
13	GO:1902448: positive regulation of shade avoidance	2.17E-04
14	GO:0006591: ornithine metabolic process	2.17E-04
15	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	2.17E-04
16	GO:1901672: positive regulation of systemic acquired resistance	2.17E-04
17	GO:0043617: cellular response to sucrose starvation	2.17E-04
18	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.17E-04
19	GO:0009646: response to absence of light	2.91E-04
20	GO:1901332: negative regulation of lateral root development	3.17E-04
21	GO:0051567: histone H3-K9 methylation	4.24E-04
22	GO:0006749: glutathione metabolic process	4.24E-04
23	GO:1902347: response to strigolactone	4.24E-04
24	GO:0034613: cellular protein localization	4.24E-04
25	GO:0000304: response to singlet oxygen	5.39E-04
26	GO:0010117: photoprotection	5.39E-04
27	GO:0046283: anthocyanin-containing compound metabolic process	5.39E-04
28	GO:0009229: thiamine diphosphate biosynthetic process	5.39E-04
29	GO:0031053: primary miRNA processing	6.60E-04
30	GO:1901371: regulation of leaf morphogenesis	6.60E-04
31	GO:0009228: thiamine biosynthetic process	6.60E-04
32	GO:0060918: auxin transport	6.60E-04
33	GO:0009117: nucleotide metabolic process	6.60E-04
34	GO:0016458: gene silencing	6.60E-04
35	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.60E-04
36	GO:0016070: RNA metabolic process	6.60E-04
37	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.87E-04
38	GO:0034389: lipid particle organization	7.87E-04
39	GO:0010076: maintenance of floral meristem identity	7.87E-04
40	GO:0010555: response to mannitol	7.87E-04
41	GO:0010310: regulation of hydrogen peroxide metabolic process	7.87E-04
42	GO:2000067: regulation of root morphogenesis	7.87E-04
43	GO:0051510: regulation of unidimensional cell growth	9.18E-04
44	GO:0009744: response to sucrose	9.96E-04
45	GO:0045292: mRNA cis splicing, via spliceosome	1.06E-03
46	GO:0010928: regulation of auxin mediated signaling pathway	1.06E-03
47	GO:0042255: ribosome assembly	1.06E-03
48	GO:0009704: de-etiolation	1.06E-03
49	GO:0007186: G-protein coupled receptor signaling pathway	1.20E-03
50	GO:0019432: triglyceride biosynthetic process	1.35E-03
51	GO:0098656: anion transmembrane transport	1.35E-03
52	GO:0009638: phototropism	1.50E-03
53	GO:1900426: positive regulation of defense response to bacterium	1.50E-03
54	GO:0009750: response to fructose	1.84E-03
55	GO:0010582: floral meristem determinacy	2.01E-03
56	GO:0009785: blue light signaling pathway	2.19E-03
57	GO:0010075: regulation of meristem growth	2.19E-03
58	GO:0009266: response to temperature stimulus	2.38E-03
59	GO:0000162: tryptophan biosynthetic process	2.76E-03
60	GO:0034976: response to endoplasmic reticulum stress	2.76E-03
61	GO:0006071: glycerol metabolic process	2.76E-03
62	GO:2000377: regulation of reactive oxygen species metabolic process	2.96E-03
63	GO:0006487: protein N-linked glycosylation	2.96E-03
64	GO:0006306: DNA methylation	3.37E-03
65	GO:0016226: iron-sulfur cluster assembly	3.59E-03
66	GO:0080022: primary root development	4.49E-03
67	GO:0010051: xylem and phloem pattern formation	4.49E-03
68	GO:0010087: phloem or xylem histogenesis	4.49E-03
69	GO:0010118: stomatal movement	4.49E-03
70	GO:0009958: positive gravitropism	4.72E-03
71	GO:0006520: cellular amino acid metabolic process	4.72E-03
72	GO:0009658: chloroplast organization	4.91E-03
73	GO:0042752: regulation of circadian rhythm	4.96E-03
74	GO:0009749: response to glucose	5.21E-03
75	GO:0009851: auxin biosynthetic process	5.21E-03
76	GO:0007264: small GTPase mediated signal transduction	5.71E-03
77	GO:0032502: developmental process	5.71E-03
78	GO:0018298: protein-chromophore linkage	8.46E-03
79	GO:0032259: methylation	8.59E-03
80	GO:0009407: toxin catabolic process	9.06E-03
81	GO:0010218: response to far red light	9.06E-03
82	GO:0009910: negative regulation of flower development	9.36E-03
83	GO:0009637: response to blue light	9.99E-03
84	GO:0006839: mitochondrial transport	1.09E-02
85	GO:0006897: endocytosis	1.13E-02
86	GO:0009640: photomorphogenesis	1.19E-02
87	GO:0010114: response to red light	1.19E-02
88	GO:0009644: response to high light intensity	1.26E-02
89	GO:0009636: response to toxic substance	1.30E-02
90	GO:0009965: leaf morphogenesis	1.30E-02
91	GO:0000165: MAPK cascade	1.37E-02
92	GO:0006417: regulation of translation	1.58E-02
93	GO:0009416: response to light stimulus	1.60E-02
94	GO:0000398: mRNA splicing, via spliceosome	2.10E-02
95	GO:0006633: fatty acid biosynthetic process	2.61E-02
96	GO:0007623: circadian rhythm	2.79E-02
97	GO:0008380: RNA splicing	3.17E-02
98	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.61E-02
99	GO:0006970: response to osmotic stress	4.02E-02
100	GO:0080167: response to karrikin	4.44E-02
101	GO:0046777: protein autophosphorylation	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
2	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
3	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
4	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
7	GO:0008170: N-methyltransferase activity	0.00E+00
8	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
9	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
10	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
11	GO:0009008: DNA-methyltransferase activity	0.00E+00
12	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
13	GO:0004848: ureidoglycolate hydrolase activity	6.25E-07
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	5.18E-05
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.27E-04
16	GO:0016743: carboxyl- or carbamoyltransferase activity	1.27E-04
17	GO:0019003: GDP binding	2.17E-04
18	GO:0031683: G-protein beta/gamma-subunit complex binding	2.17E-04
19	GO:0000900: translation repressor activity, nucleic acid binding	2.17E-04
20	GO:0001664: G-protein coupled receptor binding	2.17E-04
21	GO:0035529: NADH pyrophosphatase activity	3.17E-04
22	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.17E-04
23	GO:0000339: RNA cap binding	3.17E-04
24	GO:0009882: blue light photoreceptor activity	3.17E-04
25	GO:0004834: tryptophan synthase activity	4.24E-04
26	GO:0016407: acetyltransferase activity	5.39E-04
27	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.87E-04
28	GO:0004144: diacylglycerol O-acyltransferase activity	7.87E-04
29	GO:0071949: FAD binding	1.35E-03
30	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.35E-03
31	GO:0001055: RNA polymerase II activity	1.50E-03
32	GO:0008047: enzyme activator activity	1.67E-03
33	GO:0001054: RNA polymerase I activity	1.84E-03
34	GO:0001056: RNA polymerase III activity	2.01E-03
35	GO:0005315: inorganic phosphate transmembrane transporter activity	2.19E-03
36	GO:0004176: ATP-dependent peptidase activity	3.37E-03
37	GO:0003756: protein disulfide isomerase activity	4.03E-03
38	GO:0003727: single-stranded RNA binding	4.03E-03
39	GO:0008514: organic anion transmembrane transporter activity	4.03E-03
40	GO:0042802: identical protein binding	4.04E-03
41	GO:0008168: methyltransferase activity	4.72E-03
42	GO:0043531: ADP binding	5.38E-03
43	GO:0008237: metallopeptidase activity	6.49E-03
44	GO:0016597: amino acid binding	6.76E-03
45	GO:0004806: triglyceride lipase activity	7.88E-03
46	GO:0005096: GTPase activator activity	8.76E-03
47	GO:0003924: GTPase activity	8.97E-03
48	GO:0004222: metalloendopeptidase activity	9.06E-03
49	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.06E-02
50	GO:0004364: glutathione transferase activity	1.16E-02
51	GO:0035091: phosphatidylinositol binding	1.26E-02
52	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.47E-02
53	GO:0016787: hydrolase activity	1.71E-02
54	GO:0019843: rRNA binding	2.22E-02
55	GO:0030170: pyridoxal phosphate binding	2.39E-02
56	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.44E-02
57	GO:0015144: carbohydrate transmembrane transporter activity	2.52E-02
58	GO:0005525: GTP binding	2.63E-02
59	GO:0005351: sugar:proton symporter activity	2.75E-02
60	GO:0005509: calcium ion binding	2.99E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	3.86E-02
62	GO:0005515: protein binding	3.90E-02
63	GO:0052689: carboxylic ester hydrolase activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0005845: mRNA cap binding complex	5.18E-05
3	GO:0005846: nuclear cap binding complex	1.27E-04
4	GO:0016605: PML body	2.17E-04
5	GO:0030140: trans-Golgi network transport vesicle	6.60E-04
6	GO:0005811: lipid particle	1.20E-03
7	GO:0016604: nuclear body	1.50E-03
8	GO:0009507: chloroplast	2.65E-03
9	GO:0000419: DNA-directed RNA polymerase V complex	2.76E-03
10	GO:0042651: thylakoid membrane	3.16E-03
11	GO:0005743: mitochondrial inner membrane	8.34E-03
12	GO:0009536: plastid	8.40E-03
13	GO:0019005: SCF ubiquitin ligase complex	8.46E-03
14	GO:0005819: spindle	1.06E-02
15	GO:0016607: nuclear speck	1.70E-02
16	GO:0005834: heterotrimeric G-protein complex	1.74E-02
17	GO:0009570: chloroplast stroma	2.11E-02
18	GO:0005654: nucleoplasm	2.18E-02
19	GO:0005759: mitochondrial matrix	2.61E-02
20	GO:0005737: cytoplasm	2.82E-02
21	GO:0005615: extracellular space	3.03E-02
22	GO:0031969: chloroplast membrane	4.44E-02
23	GO:0005789: endoplasmic reticulum membrane	4.92E-02