co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0006436: tryptophanyl-tRNA aminoacylation	6.26E-05
5	GO:0006032: chitin catabolic process	6.42E-05
6	GO:0000272: polysaccharide catabolic process	7.62E-05
7	GO:0019752: carboxylic acid metabolic process	1.52E-04
8	GO:0045793: positive regulation of cell size	2.57E-04
9	GO:0010272: response to silver ion	2.57E-04
10	GO:0008333: endosome to lysosome transport	2.57E-04
11	GO:0006168: adenine salvage	3.73E-04
12	GO:0001676: long-chain fatty acid metabolic process	3.73E-04
13	GO:0032877: positive regulation of DNA endoreduplication	3.73E-04
14	GO:0006166: purine ribonucleoside salvage	3.73E-04
15	GO:0006623: protein targeting to vacuole	3.99E-04
16	GO:0071219: cellular response to molecule of bacterial origin	4.99E-04
17	GO:0080142: regulation of salicylic acid biosynthetic process	4.99E-04
18	GO:0051781: positive regulation of cell division	4.99E-04
19	GO:0018279: protein N-linked glycosylation via asparagine	6.32E-04
20	GO:0006564: L-serine biosynthetic process	6.32E-04
21	GO:0005513: detection of calcium ion	6.32E-04
22	GO:0044209: AMP salvage	6.32E-04
23	GO:0045116: protein neddylation	6.32E-04
24	GO:0036065: fucosylation	6.32E-04
25	GO:0009648: photoperiodism	9.20E-04
26	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.20E-04
27	GO:1900056: negative regulation of leaf senescence	1.07E-03
28	GO:0009690: cytokinin metabolic process	1.24E-03
29	GO:0006102: isocitrate metabolic process	1.24E-03
30	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.24E-03
31	GO:0009642: response to light intensity	1.24E-03
32	GO:0009664: plant-type cell wall organization	1.57E-03
33	GO:0010112: regulation of systemic acquired resistance	1.58E-03
34	GO:1900426: positive regulation of defense response to bacterium	1.77E-03
35	GO:0009626: plant-type hypersensitive response	2.10E-03
36	GO:0072593: reactive oxygen species metabolic process	2.17E-03
37	GO:0016925: protein sumoylation	2.37E-03
38	GO:0008361: regulation of cell size	2.37E-03
39	GO:0006829: zinc II ion transport	2.58E-03
40	GO:0007034: vacuolar transport	2.80E-03
41	GO:0002237: response to molecule of bacterial origin	2.80E-03
42	GO:0009969: xyloglucan biosynthetic process	3.03E-03
43	GO:0055114: oxidation-reduction process	3.07E-03
44	GO:0006071: glycerol metabolic process	3.26E-03
45	GO:0042744: hydrogen peroxide catabolic process	3.36E-03
46	GO:0006289: nucleotide-excision repair	3.49E-03
47	GO:0009116: nucleoside metabolic process	3.49E-03
48	GO:0006418: tRNA aminoacylation for protein translation	3.74E-03
49	GO:0016998: cell wall macromolecule catabolic process	3.98E-03
50	GO:0007623: circadian rhythm	4.06E-03
51	GO:0019722: calcium-mediated signaling	4.76E-03
52	GO:0042147: retrograde transport, endosome to Golgi	5.03E-03
53	GO:0010118: stomatal movement	5.31E-03
54	GO:0042631: cellular response to water deprivation	5.31E-03
55	GO:0006520: cellular amino acid metabolic process	5.59E-03
56	GO:0009826: unidimensional cell growth	6.04E-03
57	GO:0009749: response to glucose	6.17E-03
58	GO:0000302: response to reactive oxygen species	6.46E-03
59	GO:0002229: defense response to oomycetes	6.46E-03
60	GO:0010193: response to ozone	6.46E-03
61	GO:0080167: response to karrikin	7.77E-03
62	GO:0000910: cytokinesis	8.02E-03
63	GO:0009615: response to virus	8.35E-03
64	GO:0009627: systemic acquired resistance	9.01E-03
65	GO:0009817: defense response to fungus, incompatible interaction	1.01E-02
66	GO:0006869: lipid transport	1.02E-02
67	GO:0009832: plant-type cell wall biogenesis	1.04E-02
68	GO:0009407: toxin catabolic process	1.08E-02
69	GO:0045087: innate immune response	1.19E-02
70	GO:0006099: tricarboxylic acid cycle	1.23E-02
71	GO:0006631: fatty acid metabolic process	1.34E-02
72	GO:0051707: response to other organism	1.42E-02
73	GO:0008643: carbohydrate transport	1.50E-02
74	GO:0009636: response to toxic substance	1.54E-02
75	GO:0006855: drug transmembrane transport	1.58E-02
76	GO:0006812: cation transport	1.67E-02
77	GO:0009809: lignin biosynthetic process	1.75E-02
78	GO:0006486: protein glycosylation	1.75E-02
79	GO:0010224: response to UV-B	1.80E-02
80	GO:0006096: glycolytic process	1.98E-02
81	GO:0009611: response to wounding	2.09E-02
82	GO:0009624: response to nematode	2.25E-02
83	GO:0055085: transmembrane transport	2.60E-02
84	GO:0010150: leaf senescence	3.33E-02
85	GO:0009739: response to gibberellin	3.60E-02
86	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.60E-02
87	GO:0006470: protein dephosphorylation	3.66E-02
88	GO:0009617: response to bacterium	3.77E-02
89	GO:0009414: response to water deprivation	4.03E-02
90	GO:0042742: defense response to bacterium	4.13E-02
91	GO:0006979: response to oxidative stress	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0003796: lysozyme activity	0.00E+00
2	GO:0016881: acid-amino acid ligase activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0004830: tryptophan-tRNA ligase activity	6.26E-05
5	GO:0004568: chitinase activity	6.42E-05
6	GO:0018708: thiol S-methyltransferase activity	1.52E-04
7	GO:0008517: folic acid transporter activity	1.52E-04
8	GO:0004618: phosphoglycerate kinase activity	1.52E-04
9	GO:0019781: NEDD8 activating enzyme activity	1.52E-04
10	GO:0004617: phosphoglycerate dehydrogenase activity	1.52E-04
11	GO:0008805: carbon-monoxide oxygenase activity	1.52E-04
12	GO:0003999: adenine phosphoribosyltransferase activity	3.73E-04
13	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.73E-04
14	GO:0070628: proteasome binding	4.99E-04
15	GO:0010011: auxin binding	4.99E-04
16	GO:0031386: protein tag	6.32E-04
17	GO:0008641: small protein activating enzyme activity	6.32E-04
18	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.32E-04
19	GO:0004040: amidase activity	6.32E-04
20	GO:0031593: polyubiquitin binding	7.73E-04
21	GO:0004656: procollagen-proline 4-dioxygenase activity	9.20E-04
22	GO:0102391: decanoate--CoA ligase activity	9.20E-04
23	GO:0004467: long-chain fatty acid-CoA ligase activity	1.07E-03
24	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.07E-03
25	GO:0016831: carboxy-lyase activity	1.07E-03
26	GO:0052747: sinapyl alcohol dehydrogenase activity	1.24E-03
27	GO:0051287: NAD binding	1.51E-03
28	GO:0004722: protein serine/threonine phosphatase activity	1.52E-03
29	GO:0000989: transcription factor activity, transcription factor binding	1.58E-03
30	GO:0008417: fucosyltransferase activity	1.58E-03
31	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.58E-03
32	GO:0008559: xenobiotic-transporting ATPase activity	2.17E-03
33	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.37E-03
34	GO:0008131: primary amine oxidase activity	2.80E-03
35	GO:0008061: chitin binding	3.03E-03
36	GO:0003712: transcription cofactor activity	3.03E-03
37	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.04E-03
38	GO:0031418: L-ascorbic acid binding	3.49E-03
39	GO:0043130: ubiquitin binding	3.49E-03
40	GO:0020037: heme binding	3.59E-03
41	GO:0008324: cation transmembrane transporter activity	3.74E-03
42	GO:0008514: organic anion transmembrane transporter activity	4.76E-03
43	GO:0004812: aminoacyl-tRNA ligase activity	5.03E-03
44	GO:0005199: structural constituent of cell wall	5.59E-03
45	GO:0046873: metal ion transmembrane transporter activity	5.59E-03
46	GO:0001085: RNA polymerase II transcription factor binding	5.59E-03
47	GO:0004872: receptor activity	6.17E-03
48	GO:0004601: peroxidase activity	6.27E-03
49	GO:0048038: quinone binding	6.46E-03
50	GO:0003684: damaged DNA binding	7.38E-03
51	GO:0008483: transaminase activity	7.70E-03
52	GO:0005509: calcium ion binding	8.02E-03
53	GO:0016597: amino acid binding	8.02E-03
54	GO:0005506: iron ion binding	8.71E-03
55	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.11E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.19E-02
57	GO:0008422: beta-glucosidase activity	1.26E-02
58	GO:0004364: glutathione transferase activity	1.38E-02
59	GO:0008289: lipid binding	1.60E-02
60	GO:0016887: ATPase activity	1.79E-02
61	GO:0016298: lipase activity	1.80E-02
62	GO:0015035: protein disulfide oxidoreductase activity	2.30E-02
63	GO:0030170: pyridoxal phosphate binding	2.85E-02
64	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.90E-02
65	GO:0019825: oxygen binding	2.91E-02
66	GO:0005524: ATP binding	3.64E-02
67	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.95E-02
68	GO:0008168: methyltransferase activity	4.42E-02
69	GO:0000287: magnesium ion binding	4.48E-02
70	GO:0046982: protein heterodimerization activity	4.48E-02
71	GO:0016788: hydrolase activity, acting on ester bonds	4.60E-02
72	GO:0003682: chromatin binding	4.72E-02
73	GO:0043531: ADP binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005794: Golgi apparatus	2.35E-04
2	GO:0009530: primary cell wall	2.57E-04
3	GO:0046861: glyoxysomal membrane	2.57E-04
4	GO:0005773: vacuole	4.84E-04
5	GO:0008250: oligosaccharyltransferase complex	6.32E-04
6	GO:0005886: plasma membrane	7.68E-04
7	GO:0005771: multivesicular body	7.73E-04
8	GO:0030904: retromer complex	7.73E-04
9	GO:0009514: glyoxysome	1.41E-03
10	GO:0031090: organelle membrane	1.58E-03
11	GO:0016021: integral component of membrane	1.91E-03
12	GO:0017119: Golgi transport complex	1.96E-03
13	GO:0005774: vacuolar membrane	3.09E-03
14	GO:0005802: trans-Golgi network	6.60E-03
15	GO:0032580: Golgi cisterna membrane	7.38E-03
16	GO:0005768: endosome	7.77E-03
17	GO:0005788: endoplasmic reticulum lumen	8.68E-03
18	GO:0005667: transcription factor complex	9.01E-03
19	GO:0009707: chloroplast outer membrane	1.01E-02
20	GO:0015934: large ribosomal subunit	1.11E-02
21	GO:0000325: plant-type vacuole	1.11E-02
22	GO:0009505: plant-type cell wall	1.18E-02
23	GO:0016020: membrane	1.24E-02
24	GO:0031902: late endosome membrane	1.34E-02
25	GO:0005789: endoplasmic reticulum membrane	1.52E-02
26	GO:0005829: cytosol	1.58E-02
27	GO:0000502: proteasome complex	1.75E-02
28	GO:0009543: chloroplast thylakoid lumen	2.65E-02
29	GO:0009506: plasmodesma	3.11E-02
30	GO:0005783: endoplasmic reticulum	3.35E-02
31	GO:0005576: extracellular region	3.51E-02
32	GO:0005615: extracellular space	3.60E-02
33	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.84E-02
34	GO:0005618: cell wall	4.98E-02