co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G24150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015678: high-affinity copper ion transport	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0009304: tRNA transcription	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
9	GO:0006907: pinocytosis	0.00E+00
10	GO:0019685: photosynthesis, dark reaction	0.00E+00
11	GO:0080005: photosystem stoichiometry adjustment	6.16E-06
12	GO:0009658: chloroplast organization	3.30E-05
13	GO:0090307: mitotic spindle assembly	4.74E-05
14	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	4.74E-05
15	GO:2001141: regulation of RNA biosynthetic process	4.74E-05
16	GO:0009767: photosynthetic electron transport chain	8.76E-05
17	GO:0045038: protein import into chloroplast thylakoid membrane	1.31E-04
18	GO:0035434: copper ion transmembrane transport	1.31E-04
19	GO:0016123: xanthophyll biosynthetic process	1.31E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	3.70E-04
21	GO:0009443: pyridoxal 5'-phosphate salvage	3.70E-04
22	GO:0051418: microtubule nucleation by microtubule organizing center	3.70E-04
23	GO:0031426: polycistronic mRNA processing	3.70E-04
24	GO:0071277: cellular response to calcium ion	3.70E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	3.70E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	3.70E-04
27	GO:0042371: vitamin K biosynthetic process	3.70E-04
28	GO:0071454: cellular response to anoxia	3.70E-04
29	GO:0071461: cellular response to redox state	3.70E-04
30	GO:0034080: CENP-A containing nucleosome assembly	3.70E-04
31	GO:1902458: positive regulation of stomatal opening	3.70E-04
32	GO:0048564: photosystem I assembly	4.14E-04
33	GO:0071482: cellular response to light stimulus	5.06E-04
34	GO:0009638: phototropism	7.16E-04
35	GO:0009098: leucine biosynthetic process	7.16E-04
36	GO:0033566: gamma-tubulin complex localization	8.05E-04
37	GO:0048255: mRNA stabilization	8.05E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.05E-04
39	GO:2000030: regulation of response to red or far red light	8.05E-04
40	GO:0010115: regulation of abscisic acid biosynthetic process	8.05E-04
41	GO:0048314: embryo sac morphogenesis	8.05E-04
42	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.05E-04
43	GO:0000256: allantoin catabolic process	8.05E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.05E-04
45	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.05E-04
46	GO:0080185: effector dependent induction by symbiont of host immune response	8.05E-04
47	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.05E-04
48	GO:0006352: DNA-templated transcription, initiation	9.61E-04
49	GO:0015995: chlorophyll biosynthetic process	1.13E-03
50	GO:0018298: protein-chromophore linkage	1.29E-03
51	GO:0006013: mannose metabolic process	1.30E-03
52	GO:0010136: ureide catabolic process	1.30E-03
53	GO:0007052: mitotic spindle organization	1.30E-03
54	GO:0019253: reductive pentose-phosphate cycle	1.40E-03
55	GO:0010239: chloroplast mRNA processing	1.88E-03
56	GO:0006145: purine nucleobase catabolic process	1.88E-03
57	GO:0033014: tetrapyrrole biosynthetic process	1.88E-03
58	GO:0034508: centromere complex assembly	1.88E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.88E-03
60	GO:0009067: aspartate family amino acid biosynthetic process	1.88E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	1.88E-03
62	GO:0015979: photosynthesis	1.92E-03
63	GO:0007017: microtubule-based process	2.13E-03
64	GO:0006825: copper ion transport	2.13E-03
65	GO:0009451: RNA modification	2.43E-03
66	GO:0042274: ribosomal small subunit biogenesis	2.52E-03
67	GO:0031935: regulation of chromatin silencing	2.52E-03
68	GO:0009765: photosynthesis, light harvesting	2.52E-03
69	GO:0031122: cytoplasmic microtubule organization	2.52E-03
70	GO:0009902: chloroplast relocation	2.52E-03
71	GO:0009306: protein secretion	3.04E-03
72	GO:0009616: virus induced gene silencing	3.23E-03
73	GO:0016120: carotene biosynthetic process	3.23E-03
74	GO:0016558: protein import into peroxisome matrix	3.23E-03
75	GO:0010197: polar nucleus fusion	3.84E-03
76	GO:0035194: posttranscriptional gene silencing by RNA	3.99E-03
77	GO:0010190: cytochrome b6f complex assembly	3.99E-03
78	GO:0000741: karyogamy	3.99E-03
79	GO:0009643: photosynthetic acclimation	3.99E-03
80	GO:0006561: proline biosynthetic process	3.99E-03
81	GO:0009791: post-embryonic development	4.43E-03
82	GO:0017148: negative regulation of translation	4.81E-03
83	GO:0010189: vitamin E biosynthetic process	4.81E-03
84	GO:0009088: threonine biosynthetic process	4.81E-03
85	GO:0010019: chloroplast-nucleus signaling pathway	4.81E-03
86	GO:0015977: carbon fixation	4.81E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	5.68E-03
88	GO:1900056: negative regulation of leaf senescence	5.68E-03
89	GO:0080111: DNA demethylation	5.68E-03
90	GO:0080167: response to karrikin	6.35E-03
91	GO:0042255: ribosome assembly	6.61E-03
92	GO:0006353: DNA-templated transcription, termination	6.61E-03
93	GO:0009704: de-etiolation	6.61E-03
94	GO:2000070: regulation of response to water deprivation	6.61E-03
95	GO:0016126: sterol biosynthetic process	6.87E-03
96	GO:0009793: embryo development ending in seed dormancy	7.53E-03
97	GO:0022900: electron transport chain	7.58E-03
98	GO:0009657: plastid organization	7.58E-03
99	GO:0032544: plastid translation	7.58E-03
100	GO:0048507: meristem development	8.60E-03
101	GO:0090333: regulation of stomatal closure	8.60E-03
102	GO:0006783: heme biosynthetic process	8.60E-03
103	GO:0000373: Group II intron splicing	8.60E-03
104	GO:0055114: oxidation-reduction process	9.36E-03
105	GO:0006779: porphyrin-containing compound biosynthetic process	9.67E-03
106	GO:0010380: regulation of chlorophyll biosynthetic process	9.67E-03
107	GO:1900426: positive regulation of defense response to bacterium	9.67E-03
108	GO:0006811: ion transport	9.91E-03
109	GO:0051555: flavonol biosynthetic process	1.08E-02
110	GO:0009688: abscisic acid biosynthetic process	1.08E-02
111	GO:0045036: protein targeting to chloroplast	1.08E-02
112	GO:0006949: syncytium formation	1.08E-02
113	GO:0006259: DNA metabolic process	1.08E-02
114	GO:0009853: photorespiration	1.14E-02
115	GO:0009637: response to blue light	1.14E-02
116	GO:0009773: photosynthetic electron transport in photosystem I	1.19E-02
117	GO:0008285: negative regulation of cell proliferation	1.19E-02
118	GO:0006265: DNA topological change	1.19E-02
119	GO:0009089: lysine biosynthetic process via diaminopimelate	1.19E-02
120	GO:0043085: positive regulation of catalytic activity	1.19E-02
121	GO:0009750: response to fructose	1.19E-02
122	GO:0045037: protein import into chloroplast stroma	1.32E-02
123	GO:0010114: response to red light	1.47E-02
124	GO:0034605: cellular response to heat	1.57E-02
125	GO:0010207: photosystem II assembly	1.57E-02
126	GO:0009644: response to high light intensity	1.60E-02
127	GO:0006863: purine nucleobase transport	1.84E-02
128	GO:0006071: glycerol metabolic process	1.84E-02
129	GO:0080147: root hair cell development	1.98E-02
130	GO:0006289: nucleotide-excision repair	1.98E-02
131	GO:0006810: transport	2.01E-02
132	GO:0010073: meristem maintenance	2.12E-02
133	GO:0051321: meiotic cell cycle	2.27E-02
134	GO:0009735: response to cytokinin	2.37E-02
135	GO:0016226: iron-sulfur cluster assembly	2.42E-02
136	GO:0080092: regulation of pollen tube growth	2.42E-02
137	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.58E-02
138	GO:0010227: floral organ abscission	2.58E-02
139	GO:0009553: embryo sac development	2.75E-02
140	GO:0016117: carotenoid biosynthetic process	2.90E-02
141	GO:0070417: cellular response to cold	2.90E-02
142	GO:0000226: microtubule cytoskeleton organization	3.06E-02
143	GO:0008033: tRNA processing	3.06E-02
144	GO:0010118: stomatal movement	3.06E-02
145	GO:0006606: protein import into nucleus	3.06E-02
146	GO:0009958: positive gravitropism	3.23E-02
147	GO:0010182: sugar mediated signaling pathway	3.23E-02
148	GO:0048868: pollen tube development	3.23E-02
149	GO:0015986: ATP synthesis coupled proton transport	3.40E-02
150	GO:0007059: chromosome segregation	3.40E-02
151	GO:0008654: phospholipid biosynthetic process	3.57E-02
152	GO:0010193: response to ozone	3.75E-02
153	GO:0006635: fatty acid beta-oxidation	3.75E-02
154	GO:0007264: small GTPase mediated signal transduction	3.93E-02
155	GO:0019761: glucosinolate biosynthetic process	3.93E-02
156	GO:0032502: developmental process	3.93E-02
157	GO:0009828: plant-type cell wall loosening	4.30E-02
158	GO:0000910: cytokinesis	4.68E-02
159	GO:0007623: circadian rhythm	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0042623: ATPase activity, coupled	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.16E-06
10	GO:0019899: enzyme binding	8.89E-06
11	GO:0004848: ureidoglycolate hydrolase activity	2.16E-05
12	GO:0016851: magnesium chelatase activity	4.74E-05
13	GO:0016987: sigma factor activity	8.40E-05
14	GO:0043015: gamma-tubulin binding	8.40E-05
15	GO:0001053: plastid sigma factor activity	8.40E-05
16	GO:0016491: oxidoreductase activity	2.02E-04
17	GO:0004451: isocitrate lyase activity	3.70E-04
18	GO:0004325: ferrochelatase activity	3.70E-04
19	GO:0030941: chloroplast targeting sequence binding	3.70E-04
20	GO:0046906: tetrapyrrole binding	3.70E-04
21	GO:0005375: copper ion transmembrane transporter activity	5.06E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.05E-04
23	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.61E-04
24	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.30E-03
25	GO:0032947: protein complex scaffold	1.30E-03
26	GO:0004148: dihydrolipoyl dehydrogenase activity	1.30E-03
27	GO:0070402: NADPH binding	1.30E-03
28	GO:0015089: high-affinity copper ion transmembrane transporter activity	1.30E-03
29	GO:0008430: selenium binding	1.30E-03
30	GO:0004180: carboxypeptidase activity	1.30E-03
31	GO:0004072: aspartate kinase activity	1.88E-03
32	GO:0000254: C-4 methylsterol oxidase activity	1.88E-03
33	GO:0048027: mRNA 5'-UTR binding	1.88E-03
34	GO:0009882: blue light photoreceptor activity	1.88E-03
35	GO:0043023: ribosomal large subunit binding	1.88E-03
36	GO:0016984: ribulose-bisphosphate carboxylase activity	1.88E-03
37	GO:0043495: protein anchor	2.52E-03
38	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.52E-03
39	GO:0051861: glycolipid binding	2.52E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.52E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	2.65E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	2.80E-03
43	GO:0003727: single-stranded RNA binding	3.04E-03
44	GO:0051011: microtubule minus-end binding	3.23E-03
45	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.51E-03
46	GO:0000293: ferric-chelate reductase activity	3.99E-03
47	GO:0004605: phosphatidate cytidylyltransferase activity	3.99E-03
48	GO:0048038: quinone binding	4.74E-03
49	GO:0015631: tubulin binding	4.81E-03
50	GO:0004559: alpha-mannosidase activity	4.81E-03
51	GO:0008195: phosphatidate phosphatase activity	4.81E-03
52	GO:0008237: metallopeptidase activity	6.11E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	6.61E-03
54	GO:0016168: chlorophyll binding	7.27E-03
55	GO:0019843: rRNA binding	7.34E-03
56	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.58E-03
57	GO:0003724: RNA helicase activity	7.58E-03
58	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.60E-03
59	GO:0008565: protein transporter activity	9.22E-03
60	GO:0005506: iron ion binding	9.32E-03
61	GO:0001054: RNA polymerase I activity	1.19E-02
62	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
63	GO:0004519: endonuclease activity	1.30E-02
64	GO:0001056: RNA polymerase III activity	1.32E-02
65	GO:0004022: alcohol dehydrogenase (NAD) activity	1.44E-02
66	GO:0031072: heat shock protein binding	1.44E-02
67	GO:0000155: phosphorelay sensor kinase activity	1.44E-02
68	GO:0042802: identical protein binding	1.50E-02
69	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.57E-02
70	GO:0008146: sulfotransferase activity	1.70E-02
71	GO:0051287: NAD binding	1.79E-02
72	GO:0003887: DNA-directed DNA polymerase activity	1.84E-02
73	GO:0051536: iron-sulfur cluster binding	1.98E-02
74	GO:0003690: double-stranded DNA binding	2.06E-02
75	GO:0005345: purine nucleobase transmembrane transporter activity	2.12E-02
76	GO:0004176: ATP-dependent peptidase activity	2.27E-02
77	GO:0003674: molecular_function	2.57E-02
78	GO:0008080: N-acetyltransferase activity	3.23E-02
79	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.23E-02
80	GO:0010181: FMN binding	3.40E-02
81	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.64E-02
82	GO:0004518: nuclease activity	3.93E-02
83	GO:0009055: electron carrier activity	4.46E-02
84	GO:0008483: transaminase activity	4.49E-02
85	GO:0005200: structural constituent of cytoskeleton	4.49E-02
86	GO:0016597: amino acid binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.02E-37
2	GO:0009535: chloroplast thylakoid membrane	4.09E-20
3	GO:0009570: chloroplast stroma	1.70E-06
4	GO:0008274: gamma-tubulin ring complex	6.16E-06
5	GO:0031969: chloroplast membrane	7.81E-06
6	GO:0033281: TAT protein transport complex	2.16E-05
7	GO:0000923: equatorial microtubule organizing center	4.74E-05
8	GO:0009941: chloroplast envelope	5.77E-05
9	GO:0009579: thylakoid	6.16E-05
10	GO:0030286: dynein complex	8.40E-05
11	GO:0042651: thylakoid membrane	1.98E-04
12	GO:0031021: interphase microtubule organizing center	3.70E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.07E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	8.05E-04
15	GO:0009706: chloroplast inner membrane	1.02E-03
16	GO:0009534: chloroplast thylakoid	1.03E-03
17	GO:0005640: nuclear outer membrane	1.30E-03
18	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	1.30E-03
19	GO:0010007: magnesium chelatase complex	1.30E-03
20	GO:0030095: chloroplast photosystem II	1.40E-03
21	GO:0009543: chloroplast thylakoid lumen	1.43E-03
22	GO:0009654: photosystem II oxygen evolving complex	2.13E-03
23	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.52E-03
24	GO:0005828: kinetochore microtubule	2.52E-03
25	GO:0000930: gamma-tubulin complex	2.52E-03
26	GO:0072686: mitotic spindle	3.23E-03
27	GO:0000776: kinetochore	3.23E-03
28	GO:0055035: plastid thylakoid membrane	3.23E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.99E-03
30	GO:0009523: photosystem II	4.43E-03
31	GO:0009840: chloroplastic endopeptidase Clp complex	4.81E-03
32	GO:0000123: histone acetyltransferase complex	5.68E-03
33	GO:0031359: integral component of chloroplast outer membrane	5.68E-03
34	GO:0009295: nucleoid	6.11E-03
35	GO:0009539: photosystem II reaction center	7.58E-03
36	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.58E-03
37	GO:0046930: pore complex	7.58E-03
38	GO:0005736: DNA-directed RNA polymerase I complex	8.60E-03
39	GO:0042644: chloroplast nucleoid	8.60E-03
40	GO:0000922: spindle pole	8.60E-03
41	GO:0009707: chloroplast outer membrane	8.97E-03
42	GO:0005666: DNA-directed RNA polymerase III complex	9.67E-03
43	GO:0016324: apical plasma membrane	1.08E-02
44	GO:0031977: thylakoid lumen	1.36E-02
45	GO:0009536: plastid	1.43E-02
46	GO:0009508: plastid chromosome	1.44E-02
47	GO:0009574: preprophase band	1.44E-02
48	GO:0043234: protein complex	1.84E-02
49	GO:0005875: microtubule associated complex	1.84E-02
50	GO:0031966: mitochondrial membrane	1.85E-02
51	GO:0045271: respiratory chain complex I	2.12E-02
52	GO:0005747: mitochondrial respiratory chain complex I	2.43E-02
53	GO:0019898: extrinsic component of membrane	3.57E-02
54	GO:0005623: cell	3.64E-02
55	GO:0009505: plant-type cell wall	4.02E-02
56	GO:0005778: peroxisomal membrane	4.49E-02
57	GO:0010319: stromule	4.49E-02
58	GO:0043231: intracellular membrane-bounded organelle	4.61E-02