Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G23610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0007172: signal complex assembly0.00E+00
7GO:0006114: glycerol biosynthetic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0010966: regulation of phosphate transport0.00E+00
10GO:0015979: photosynthesis4.13E-16
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.84E-07
12GO:0010027: thylakoid membrane organization2.95E-07
13GO:0010207: photosystem II assembly4.09E-06
14GO:0018026: peptidyl-lysine monomethylation6.59E-06
15GO:0015995: chlorophyll biosynthetic process1.10E-05
16GO:0018298: protein-chromophore linkage1.43E-05
17GO:0010206: photosystem II repair2.86E-05
18GO:0019684: photosynthesis, light reaction6.23E-05
19GO:0009773: photosynthetic electron transport in photosystem I6.23E-05
20GO:0006109: regulation of carbohydrate metabolic process8.90E-05
21GO:0042549: photosystem II stabilization1.99E-04
22GO:0009768: photosynthesis, light harvesting in photosystem I2.12E-04
23GO:0010196: nonphotochemical quenching3.47E-04
24GO:0010450: inflorescence meristem growth3.84E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.84E-04
26GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.84E-04
27GO:0000476: maturation of 4.5S rRNA3.84E-04
28GO:0000967: rRNA 5'-end processing3.84E-04
29GO:0043953: protein transport by the Tat complex3.84E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.84E-04
31GO:0010480: microsporocyte differentiation3.84E-04
32GO:0000481: maturation of 5S rRNA3.84E-04
33GO:1904964: positive regulation of phytol biosynthetic process3.84E-04
34GO:0042371: vitamin K biosynthetic process3.84E-04
35GO:0065002: intracellular protein transmembrane transport3.84E-04
36GO:0043686: co-translational protein modification3.84E-04
37GO:0046167: glycerol-3-phosphate biosynthetic process3.84E-04
38GO:0043007: maintenance of rDNA3.84E-04
39GO:1902458: positive regulation of stomatal opening3.84E-04
40GO:0034337: RNA folding3.84E-04
41GO:0032544: plastid translation5.32E-04
42GO:0010205: photoinhibition7.52E-04
43GO:0034470: ncRNA processing8.33E-04
44GO:0035304: regulation of protein dephosphorylation8.33E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process8.33E-04
46GO:0006650: glycerophospholipid metabolic process8.33E-04
47GO:0006729: tetrahydrobiopterin biosynthetic process8.33E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process8.33E-04
49GO:0043085: positive regulation of catalytic activity1.01E-03
50GO:0009658: chloroplast organization1.14E-03
51GO:0016311: dephosphorylation1.29E-03
52GO:0046168: glycerol-3-phosphate catabolic process1.35E-03
53GO:0006954: inflammatory response1.35E-03
54GO:0090391: granum assembly1.35E-03
55GO:0009405: pathogenesis1.35E-03
56GO:0005977: glycogen metabolic process1.35E-03
57GO:0045165: cell fate commitment1.35E-03
58GO:0009934: regulation of meristem structural organization1.47E-03
59GO:0071484: cellular response to light intensity1.95E-03
60GO:0010239: chloroplast mRNA processing1.95E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.95E-03
62GO:0006072: glycerol-3-phosphate metabolic process1.95E-03
63GO:0010306: rhamnogalacturonan II biosynthetic process1.95E-03
64GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.95E-03
65GO:1901332: negative regulation of lateral root development1.95E-03
66GO:0042823: pyridoxal phosphate biosynthetic process1.95E-03
67GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.95E-03
68GO:0045454: cell redox homeostasis2.29E-03
69GO:0019915: lipid storage2.47E-03
70GO:0061077: chaperone-mediated protein folding2.47E-03
71GO:0019464: glycine decarboxylation via glycine cleavage system2.62E-03
72GO:0009765: photosynthesis, light harvesting2.62E-03
73GO:0045727: positive regulation of translation2.62E-03
74GO:0015994: chlorophyll metabolic process2.62E-03
75GO:0022622: root system development2.62E-03
76GO:0006546: glycine catabolic process2.62E-03
77GO:0006552: leucine catabolic process2.62E-03
78GO:0010021: amylopectin biosynthetic process2.62E-03
79GO:0015976: carbon utilization2.62E-03
80GO:0006810: transport2.92E-03
81GO:0010158: abaxial cell fate specification3.35E-03
82GO:0006465: signal peptide processing3.35E-03
83GO:0000304: response to singlet oxygen3.35E-03
84GO:0016558: protein import into peroxisome matrix3.35E-03
85GO:0010236: plastoquinone biosynthetic process3.35E-03
86GO:0045038: protein import into chloroplast thylakoid membrane3.35E-03
87GO:0031365: N-terminal protein amino acid modification3.35E-03
88GO:0035434: copper ion transmembrane transport3.35E-03
89GO:1902183: regulation of shoot apical meristem development3.35E-03
90GO:0042631: cellular response to water deprivation3.75E-03
91GO:0006662: glycerol ether metabolic process4.05E-03
92GO:0042793: transcription from plastid promoter4.14E-03
93GO:0010190: cytochrome b6f complex assembly4.14E-03
94GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.14E-03
95GO:0043086: negative regulation of catalytic activity4.64E-03
96GO:0042372: phylloquinone biosynthetic process4.99E-03
97GO:1901259: chloroplast rRNA processing4.99E-03
98GO:0009772: photosynthetic electron transport in photosystem II5.89E-03
99GO:0048437: floral organ development5.89E-03
100GO:0009645: response to low light intensity stimulus5.89E-03
101GO:0022904: respiratory electron transport chain5.89E-03
102GO:0032880: regulation of protein localization5.89E-03
103GO:0016559: peroxisome fission6.85E-03
104GO:0048564: photosystem I assembly6.85E-03
105GO:0009642: response to light intensity6.85E-03
106GO:0032508: DNA duplex unwinding6.85E-03
107GO:2000070: regulation of response to water deprivation6.85E-03
108GO:0000105: histidine biosynthetic process6.85E-03
109GO:0009231: riboflavin biosynthetic process6.85E-03
110GO:0015996: chlorophyll catabolic process7.86E-03
111GO:0007186: G-protein coupled receptor signaling pathway7.86E-03
112GO:0017004: cytochrome complex assembly7.86E-03
113GO:0010093: specification of floral organ identity7.86E-03
114GO:0005975: carbohydrate metabolic process8.82E-03
115GO:2000024: regulation of leaf development8.92E-03
116GO:0006779: porphyrin-containing compound biosynthetic process1.00E-02
117GO:0006949: syncytium formation1.12E-02
118GO:0031627: telomeric loop formation1.12E-02
119GO:0006782: protoporphyrinogen IX biosynthetic process1.12E-02
120GO:0032259: methylation1.16E-02
121GO:0009089: lysine biosynthetic process via diaminopimelate1.24E-02
122GO:0009073: aromatic amino acid family biosynthetic process1.24E-02
123GO:1903507: negative regulation of nucleic acid-templated transcription1.24E-02
124GO:0000272: polysaccharide catabolic process1.24E-02
125GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-02
126GO:0048229: gametophyte development1.24E-02
127GO:0034599: cellular response to oxidative stress1.26E-02
128GO:0005983: starch catabolic process1.37E-02
129GO:0045037: protein import into chloroplast stroma1.37E-02
130GO:0071365: cellular response to auxin stimulus1.37E-02
131GO:0009767: photosynthetic electron transport chain1.49E-02
132GO:2000012: regulation of auxin polar transport1.49E-02
133GO:0006006: glucose metabolic process1.49E-02
134GO:0010075: regulation of meristem growth1.49E-02
135GO:0006302: double-strand break repair1.63E-02
136GO:0010020: chloroplast fission1.63E-02
137GO:0009933: meristem structural organization1.63E-02
138GO:0019253: reductive pentose-phosphate cycle1.63E-02
139GO:0009266: response to temperature stimulus1.63E-02
140GO:0019853: L-ascorbic acid biosynthetic process1.77E-02
141GO:0010030: positive regulation of seed germination1.77E-02
142GO:0000162: tryptophan biosynthetic process1.91E-02
143GO:0006636: unsaturated fatty acid biosynthetic process1.91E-02
144GO:0009944: polarity specification of adaxial/abaxial axis2.05E-02
145GO:0006364: rRNA processing2.10E-02
146GO:0019953: sexual reproduction2.20E-02
147GO:0007017: microtubule-based process2.20E-02
148GO:0006825: copper ion transport2.20E-02
149GO:0009909: regulation of flower development2.32E-02
150GO:0031408: oxylipin biosynthetic process2.36E-02
151GO:0051321: meiotic cell cycle2.36E-02
152GO:0048511: rhythmic process2.36E-02
153GO:0006096: glycolytic process2.48E-02
154GO:2000022: regulation of jasmonic acid mediated signaling pathway2.51E-02
155GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.67E-02
156GO:0071369: cellular response to ethylene stimulus2.67E-02
157GO:0006012: galactose metabolic process2.67E-02
158GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.81E-02
159GO:0009561: megagametogenesis2.84E-02
160GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.01E-02
161GO:0070417: cellular response to cold3.01E-02
162GO:0008284: positive regulation of cell proliferation3.01E-02
163GO:0048653: anther development3.18E-02
164GO:0009958: positive gravitropism3.35E-02
165GO:0006520: cellular amino acid metabolic process3.35E-02
166GO:0010154: fruit development3.35E-02
167GO:0010182: sugar mediated signaling pathway3.35E-02
168GO:0048868: pollen tube development3.35E-02
169GO:0009646: response to absence of light3.53E-02
170GO:0042752: regulation of circadian rhythm3.53E-02
171GO:0019252: starch biosynthetic process3.71E-02
172GO:0008654: phospholipid biosynthetic process3.71E-02
173GO:0071554: cell wall organization or biogenesis3.89E-02
174GO:0002229: defense response to oomycetes3.89E-02
175GO:0006635: fatty acid beta-oxidation3.89E-02
176GO:0048235: pollen sperm cell differentiation4.08E-02
177GO:0009567: double fertilization forming a zygote and endosperm4.46E-02
178GO:0009828: plant-type cell wall loosening4.46E-02
179GO:0009409: response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
2GO:0043136: glycerol-3-phosphatase activity0.00E+00
3GO:0000121: glycerol-1-phosphatase activity0.00E+00
4GO:0010349: L-galactose dehydrogenase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
7GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0042623: ATPase activity, coupled0.00E+00
10GO:0048039: ubiquinone binding0.00E+00
11GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
12GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
13GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
14GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.21E-07
15GO:0005528: FK506 binding8.60E-06
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.54E-05
17GO:0016279: protein-lysine N-methyltransferase activity8.90E-05
18GO:0008266: poly(U) RNA binding1.14E-04
19GO:0016168: chlorophyll binding1.24E-04
20GO:0003959: NADPH dehydrogenase activity1.39E-04
21GO:0031409: pigment binding1.59E-04
22GO:0004857: enzyme inhibitor activity1.84E-04
23GO:0004462: lactoylglutathione lyase activity1.99E-04
24GO:0019843: rRNA binding2.91E-04
25GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.84E-04
26GO:0050308: sugar-phosphatase activity3.84E-04
27GO:0010242: oxygen evolving activity3.84E-04
28GO:0019203: carbohydrate phosphatase activity3.84E-04
29GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.84E-04
30GO:0042586: peptide deformylase activity3.84E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.84E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.84E-04
33GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.84E-04
34GO:0048038: quinone binding6.19E-04
35GO:0009977: proton motive force dependent protein transmembrane transporter activity8.33E-04
36GO:0016630: protochlorophyllide reductase activity8.33E-04
37GO:0019156: isoamylase activity8.33E-04
38GO:0030385: ferredoxin:thioredoxin reductase activity8.33E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.33E-04
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.33E-04
41GO:0047746: chlorophyllase activity8.33E-04
42GO:0042389: omega-3 fatty acid desaturase activity8.33E-04
43GO:0016868: intramolecular transferase activity, phosphotransferases8.33E-04
44GO:0010297: heteropolysaccharide binding8.33E-04
45GO:0008047: enzyme activator activity8.76E-04
46GO:0015035: protein disulfide oxidoreductase activity1.15E-03
47GO:0031072: heat shock protein binding1.31E-03
48GO:0004324: ferredoxin-NADP+ reductase activity1.35E-03
49GO:0005504: fatty acid binding1.35E-03
50GO:0003913: DNA photolyase activity1.35E-03
51GO:0090729: toxin activity1.35E-03
52GO:0004751: ribose-5-phosphate isomerase activity1.35E-03
53GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.35E-03
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.35E-03
55GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.95E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity1.95E-03
57GO:0016851: magnesium chelatase activity1.95E-03
58GO:0003993: acid phosphatase activity1.96E-03
59GO:0033612: receptor serine/threonine kinase binding2.47E-03
60GO:0045430: chalcone isomerase activity2.62E-03
61GO:0043495: protein anchor2.62E-03
62GO:0004659: prenyltransferase activity2.62E-03
63GO:0030570: pectate lyase activity2.95E-03
64GO:0047134: protein-disulfide reductase activity3.47E-03
65GO:0009055: electron carrier activity3.75E-03
66GO:0004556: alpha-amylase activity4.14E-03
67GO:0042578: phosphoric ester hydrolase activity4.14E-03
68GO:2001070: starch binding4.14E-03
69GO:0004791: thioredoxin-disulfide reductase activity4.35E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.99E-03
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.69E-03
72GO:0051082: unfolded protein binding5.88E-03
73GO:0009881: photoreceptor activity5.89E-03
74GO:0019899: enzyme binding5.89E-03
75GO:0004033: aldo-keto reductase (NADP) activity6.85E-03
76GO:0005375: copper ion transmembrane transporter activity7.86E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.86E-03
78GO:0016829: lyase activity8.66E-03
79GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.92E-03
80GO:0030145: manganese ion binding1.10E-02
81GO:0015020: glucuronosyltransferase activity1.12E-02
82GO:0003691: double-stranded telomeric DNA binding1.24E-02
83GO:0004521: endoribonuclease activity1.37E-02
84GO:0004565: beta-galactosidase activity1.49E-02
85GO:0004089: carbonate dehydratase activity1.49E-02
86GO:0008083: growth factor activity1.63E-02
87GO:0051287: NAD binding1.88E-02
88GO:0008168: methyltransferase activity1.96E-02
89GO:0003714: transcription corepressor activity2.05E-02
90GO:0008408: 3'-5' exonuclease activity2.36E-02
91GO:0005509: calcium ion binding2.64E-02
92GO:0022891: substrate-specific transmembrane transporter activity2.67E-02
93GO:0003756: protein disulfide isomerase activity2.84E-02
94GO:0050662: coenzyme binding3.53E-02
95GO:0004722: protein serine/threonine phosphatase activity3.78E-02
96GO:0003735: structural constituent of ribosome3.89E-02
97GO:0003924: GTPase activity4.37E-02
98GO:0008483: transaminase activity4.66E-02
99GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.66E-02
100GO:0005200: structural constituent of cytoskeleton4.66E-02
101GO:0016413: O-acetyltransferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0010368: chloroplast isoamylase complex0.00E+00
5GO:0009349: riboflavin synthase complex0.00E+00
6GO:0009507: chloroplast1.73E-58
7GO:0009535: chloroplast thylakoid membrane3.81E-46
8GO:0009534: chloroplast thylakoid7.18E-32
9GO:0009570: chloroplast stroma2.34E-24
10GO:0009579: thylakoid1.05E-19
11GO:0009941: chloroplast envelope1.47E-19
12GO:0009543: chloroplast thylakoid lumen4.05E-17
13GO:0030095: chloroplast photosystem II1.27E-13
14GO:0031977: thylakoid lumen1.51E-10
15GO:0009538: photosystem I reaction center1.54E-09
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.57E-09
17GO:0010287: plastoglobule1.02E-08
18GO:0009654: photosystem II oxygen evolving complex2.89E-07
19GO:0019898: extrinsic component of membrane2.28E-06
20GO:0000427: plastid-encoded plastid RNA polymerase complex6.59E-06
21GO:0009523: photosystem II4.91E-05
22GO:0031969: chloroplast membrane7.14E-05
23GO:0031361: integral component of thylakoid membrane3.84E-04
24GO:0009782: photosystem I antenna complex3.84E-04
25GO:0000791: euchromatin3.84E-04
26GO:0009783: photosystem II antenna complex3.84E-04
27GO:0009515: granal stacked thylakoid3.84E-04
28GO:0005787: signal peptidase complex3.84E-04
29GO:0009522: photosystem I5.19E-04
30GO:0030870: Mre11 complex8.33E-04
31GO:0010319: stromule8.52E-04
32GO:0005840: ribosome1.30E-03
33GO:0009508: plastid chromosome1.31E-03
34GO:0009528: plastid inner membrane1.35E-03
35GO:0010007: magnesium chelatase complex1.35E-03
36GO:0033281: TAT protein transport complex1.35E-03
37GO:0030076: light-harvesting complex1.65E-03
38GO:0048046: apoplast1.69E-03
39GO:0005960: glycine cleavage complex1.95E-03
40GO:0009331: glycerol-3-phosphate dehydrogenase complex1.95E-03
41GO:0042651: thylakoid membrane2.25E-03
42GO:0009527: plastid outer membrane2.62E-03
43GO:0000795: synaptonemal complex3.35E-03
44GO:0016272: prefoldin complex4.99E-03
45GO:0009533: chloroplast stromal thylakoid5.89E-03
46GO:0009295: nucleoid6.44E-03
47GO:0031305: integral component of mitochondrial inner membrane6.85E-03
48GO:0000783: nuclear telomere cap complex7.86E-03
49GO:0045298: tubulin complex8.92E-03
50GO:0009707: chloroplast outer membrane9.46E-03
51GO:0055028: cortical microtubule1.12E-02
52GO:0005740: mitochondrial envelope1.12E-02
53GO:0012511: monolayer-surrounded lipid storage body1.24E-02
54GO:0032040: small-subunit processome1.37E-02
55GO:0043234: protein complex1.91E-02
56GO:0031225: anchored component of membrane1.95E-02
57GO:0015935: small ribosomal subunit2.36E-02
58GO:0009532: plastid stroma2.36E-02
59GO:0016021: integral component of membrane2.50E-02
60GO:0005874: microtubule2.58E-02
61GO:0000785: chromatin4.08E-02
62GO:0005778: peroxisomal membrane4.66E-02
63GO:0016020: membrane4.89E-02
<
Gene type



Gene DE type