GO Enrichment Analysis of Co-expressed Genes with
AT2G23000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0046677: response to antibiotic | 0.00E+00 |
| 5 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 7 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 8 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 9 | GO:0009645: response to low light intensity stimulus | 6.46E-10 |
| 10 | GO:0009644: response to high light intensity | 3.92E-09 |
| 11 | GO:0015979: photosynthesis | 7.06E-08 |
| 12 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.90E-08 |
| 13 | GO:0010114: response to red light | 1.61E-07 |
| 14 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.91E-07 |
| 15 | GO:0018298: protein-chromophore linkage | 2.21E-06 |
| 16 | GO:0006021: inositol biosynthetic process | 6.01E-06 |
| 17 | GO:0009269: response to desiccation | 7.97E-06 |
| 18 | GO:0090333: regulation of stomatal closure | 6.25E-05 |
| 19 | GO:0051775: response to redox state | 7.90E-05 |
| 20 | GO:0071277: cellular response to calcium ion | 7.90E-05 |
| 21 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.90E-05 |
| 22 | GO:0006106: fumarate metabolic process | 7.90E-05 |
| 23 | GO:0010028: xanthophyll cycle | 7.90E-05 |
| 24 | GO:0010218: response to far red light | 8.27E-05 |
| 25 | GO:0055114: oxidation-reduction process | 1.17E-04 |
| 26 | GO:0006108: malate metabolic process | 1.45E-04 |
| 27 | GO:0009416: response to light stimulus | 1.63E-04 |
| 28 | GO:0009915: phloem sucrose loading | 1.89E-04 |
| 29 | GO:0042548: regulation of photosynthesis, light reaction | 1.89E-04 |
| 30 | GO:0009629: response to gravity | 1.89E-04 |
| 31 | GO:0010042: response to manganese ion | 1.89E-04 |
| 32 | GO:0000256: allantoin catabolic process | 1.89E-04 |
| 33 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 1.89E-04 |
| 34 | GO:0016122: xanthophyll metabolic process | 1.89E-04 |
| 35 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.89E-04 |
| 36 | GO:0006833: water transport | 2.10E-04 |
| 37 | GO:0009409: response to cold | 2.16E-04 |
| 38 | GO:0090391: granum assembly | 3.17E-04 |
| 39 | GO:0010136: ureide catabolic process | 3.17E-04 |
| 40 | GO:0034220: ion transmembrane transport | 4.36E-04 |
| 41 | GO:0006107: oxaloacetate metabolic process | 4.58E-04 |
| 42 | GO:0006145: purine nucleobase catabolic process | 4.58E-04 |
| 43 | GO:0042989: sequestering of actin monomers | 4.58E-04 |
| 44 | GO:0019252: starch biosynthetic process | 5.39E-04 |
| 45 | GO:0009765: photosynthesis, light harvesting | 6.09E-04 |
| 46 | GO:0015994: chlorophyll metabolic process | 6.09E-04 |
| 47 | GO:0030104: water homeostasis | 6.09E-04 |
| 48 | GO:0006734: NADH metabolic process | 6.09E-04 |
| 49 | GO:0010109: regulation of photosynthesis | 6.09E-04 |
| 50 | GO:0016558: protein import into peroxisome matrix | 7.72E-04 |
| 51 | GO:0030041: actin filament polymerization | 7.72E-04 |
| 52 | GO:0016123: xanthophyll biosynthetic process | 7.72E-04 |
| 53 | GO:0046855: inositol phosphate dephosphorylation | 9.42E-04 |
| 54 | GO:0009643: photosynthetic acclimation | 9.42E-04 |
| 55 | GO:0050665: hydrogen peroxide biosynthetic process | 9.42E-04 |
| 56 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 9.42E-04 |
| 57 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9.42E-04 |
| 58 | GO:0015995: chlorophyll biosynthetic process | 9.59E-04 |
| 59 | GO:0009813: flavonoid biosynthetic process | 1.11E-03 |
| 60 | GO:0071470: cellular response to osmotic stress | 1.12E-03 |
| 61 | GO:0010189: vitamin E biosynthetic process | 1.12E-03 |
| 62 | GO:0009854: oxidative photosynthetic carbon pathway | 1.12E-03 |
| 63 | GO:0009658: chloroplast organization | 1.22E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 1.31E-03 |
| 65 | GO:0030026: cellular manganese ion homeostasis | 1.31E-03 |
| 66 | GO:0051510: regulation of unidimensional cell growth | 1.31E-03 |
| 67 | GO:0009637: response to blue light | 1.32E-03 |
| 68 | GO:0034599: cellular response to oxidative stress | 1.38E-03 |
| 69 | GO:0006099: tricarboxylic acid cycle | 1.38E-03 |
| 70 | GO:0009642: response to light intensity | 1.51E-03 |
| 71 | GO:0009704: de-etiolation | 1.51E-03 |
| 72 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.51E-03 |
| 73 | GO:0071482: cellular response to light stimulus | 1.72E-03 |
| 74 | GO:0009657: plastid organization | 1.72E-03 |
| 75 | GO:0006098: pentose-phosphate shunt | 1.95E-03 |
| 76 | GO:0006754: ATP biosynthetic process | 1.95E-03 |
| 77 | GO:0098656: anion transmembrane transport | 1.95E-03 |
| 78 | GO:0010224: response to UV-B | 2.35E-03 |
| 79 | GO:0009688: abscisic acid biosynthetic process | 2.41E-03 |
| 80 | GO:0009641: shade avoidance | 2.41E-03 |
| 81 | GO:0009408: response to heat | 2.61E-03 |
| 82 | GO:0009698: phenylpropanoid metabolic process | 2.66E-03 |
| 83 | GO:0009773: photosynthetic electron transport in photosystem I | 2.66E-03 |
| 84 | GO:0043085: positive regulation of catalytic activity | 2.66E-03 |
| 85 | GO:0006790: sulfur compound metabolic process | 2.92E-03 |
| 86 | GO:0006094: gluconeogenesis | 3.18E-03 |
| 87 | GO:0010223: secondary shoot formation | 3.45E-03 |
| 88 | GO:0009266: response to temperature stimulus | 3.45E-03 |
| 89 | GO:0046688: response to copper ion | 3.73E-03 |
| 90 | GO:0019853: L-ascorbic acid biosynthetic process | 3.73E-03 |
| 91 | GO:0090351: seedling development | 3.73E-03 |
| 92 | GO:0046854: phosphatidylinositol phosphorylation | 3.73E-03 |
| 93 | GO:0007010: cytoskeleton organization | 4.31E-03 |
| 94 | GO:0080147: root hair cell development | 4.31E-03 |
| 95 | GO:0009845: seed germination | 4.34E-03 |
| 96 | GO:0007017: microtubule-based process | 4.61E-03 |
| 97 | GO:0006810: transport | 5.18E-03 |
| 98 | GO:0007623: circadian rhythm | 5.53E-03 |
| 99 | GO:0071215: cellular response to abscisic acid stimulus | 5.56E-03 |
| 100 | GO:0006606: protein import into nucleus | 6.57E-03 |
| 101 | GO:0006662: glycerol ether metabolic process | 6.92E-03 |
| 102 | GO:0010182: sugar mediated signaling pathway | 6.92E-03 |
| 103 | GO:0009791: post-embryonic development | 7.64E-03 |
| 104 | GO:0008654: phospholipid biosynthetic process | 7.64E-03 |
| 105 | GO:0006635: fatty acid beta-oxidation | 8.01E-03 |
| 106 | GO:0051607: defense response to virus | 9.96E-03 |
| 107 | GO:0010027: thylakoid membrane organization | 1.04E-02 |
| 108 | GO:0080167: response to karrikin | 1.06E-02 |
| 109 | GO:0042128: nitrate assimilation | 1.12E-02 |
| 110 | GO:0045454: cell redox homeostasis | 1.27E-02 |
| 111 | GO:0006979: response to oxidative stress | 1.33E-02 |
| 112 | GO:0006811: ion transport | 1.34E-02 |
| 113 | GO:0009631: cold acclimation | 1.38E-02 |
| 114 | GO:0048527: lateral root development | 1.38E-02 |
| 115 | GO:0006631: fatty acid metabolic process | 1.67E-02 |
| 116 | GO:0042542: response to hydrogen peroxide | 1.72E-02 |
| 117 | GO:0009926: auxin polar transport | 1.77E-02 |
| 118 | GO:0006855: drug transmembrane transport | 1.97E-02 |
| 119 | GO:0031347: regulation of defense response | 2.02E-02 |
| 120 | GO:0006812: cation transport | 2.08E-02 |
| 121 | GO:0006364: rRNA processing | 2.19E-02 |
| 122 | GO:0009585: red, far-red light phototransduction | 2.19E-02 |
| 123 | GO:0046686: response to cadmium ion | 2.31E-02 |
| 124 | GO:0006417: regulation of translation | 2.35E-02 |
| 125 | GO:0006096: glycolytic process | 2.46E-02 |
| 126 | GO:0009624: response to nematode | 2.81E-02 |
| 127 | GO:0006396: RNA processing | 2.87E-02 |
| 128 | GO:0045893: positive regulation of transcription, DNA-templated | 3.20E-02 |
| 129 | GO:0055085: transmembrane transport | 3.54E-02 |
| 130 | GO:0006457: protein folding | 3.61E-02 |
| 131 | GO:0016036: cellular response to phosphate starvation | 3.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 2 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 5 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 6 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 7 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 8 | GO:0033840: NDP-glucose-starch glucosyltransferase activity | 0.00E+00 |
| 9 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 10 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 11 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 12 | GO:0010486: manganese:proton antiporter activity | 0.00E+00 |
| 13 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 14 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 15 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 16 | GO:0031409: pigment binding | 4.84E-08 |
| 17 | GO:0016168: chlorophyll binding | 1.38E-06 |
| 18 | GO:0009011: starch synthase activity | 6.01E-06 |
| 19 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 7.90E-05 |
| 20 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 7.90E-05 |
| 21 | GO:0008746: NAD(P)+ transhydrogenase activity | 7.90E-05 |
| 22 | GO:0045486: naringenin 3-dioxygenase activity | 7.90E-05 |
| 23 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 7.90E-05 |
| 24 | GO:0004333: fumarate hydratase activity | 7.90E-05 |
| 25 | GO:0035671: enone reductase activity | 7.90E-05 |
| 26 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.89E-04 |
| 27 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.89E-04 |
| 28 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.89E-04 |
| 29 | GO:0004512: inositol-3-phosphate synthase activity | 1.89E-04 |
| 30 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.89E-04 |
| 31 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.17E-04 |
| 32 | GO:0004373: glycogen (starch) synthase activity | 3.17E-04 |
| 33 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.17E-04 |
| 34 | GO:0070402: NADPH binding | 3.17E-04 |
| 35 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 4.58E-04 |
| 36 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 4.58E-04 |
| 37 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 4.58E-04 |
| 38 | GO:0016853: isomerase activity | 5.04E-04 |
| 39 | GO:0008891: glycolate oxidase activity | 6.09E-04 |
| 40 | GO:0046872: metal ion binding | 6.62E-04 |
| 41 | GO:0003785: actin monomer binding | 7.72E-04 |
| 42 | GO:0051538: 3 iron, 4 sulfur cluster binding | 7.72E-04 |
| 43 | GO:0015250: water channel activity | 8.22E-04 |
| 44 | GO:0000293: ferric-chelate reductase activity | 9.42E-04 |
| 45 | GO:0016615: malate dehydrogenase activity | 9.42E-04 |
| 46 | GO:0004332: fructose-bisphosphate aldolase activity | 9.42E-04 |
| 47 | GO:0016491: oxidoreductase activity | 9.89E-04 |
| 48 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.12E-03 |
| 49 | GO:0030060: L-malate dehydrogenase activity | 1.12E-03 |
| 50 | GO:0004033: aldo-keto reductase (NADP) activity | 1.51E-03 |
| 51 | GO:0008135: translation factor activity, RNA binding | 1.72E-03 |
| 52 | GO:0071949: FAD binding | 1.95E-03 |
| 53 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 1.95E-03 |
| 54 | GO:0005384: manganese ion transmembrane transporter activity | 2.18E-03 |
| 55 | GO:0008047: enzyme activator activity | 2.41E-03 |
| 56 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.66E-03 |
| 57 | GO:0008081: phosphoric diester hydrolase activity | 3.18E-03 |
| 58 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.18E-03 |
| 59 | GO:0031072: heat shock protein binding | 3.18E-03 |
| 60 | GO:0031418: L-ascorbic acid binding | 4.31E-03 |
| 61 | GO:0003954: NADH dehydrogenase activity | 4.31E-03 |
| 62 | GO:0016887: ATPase activity | 4.54E-03 |
| 63 | GO:0008324: cation transmembrane transporter activity | 4.61E-03 |
| 64 | GO:0003727: single-stranded RNA binding | 5.89E-03 |
| 65 | GO:0008514: organic anion transmembrane transporter activity | 5.89E-03 |
| 66 | GO:0047134: protein-disulfide reductase activity | 6.22E-03 |
| 67 | GO:0010181: FMN binding | 7.28E-03 |
| 68 | GO:0004791: thioredoxin-disulfide reductase activity | 7.28E-03 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 70 | GO:0015238: drug transmembrane transporter activity | 1.29E-02 |
| 71 | GO:0050897: cobalt ion binding | 1.38E-02 |
| 72 | GO:0003746: translation elongation factor activity | 1.48E-02 |
| 73 | GO:0004185: serine-type carboxypeptidase activity | 1.77E-02 |
| 74 | GO:0043621: protein self-association | 1.87E-02 |
| 75 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.87E-02 |
| 76 | GO:0016874: ligase activity | 2.69E-02 |
| 77 | GO:0003779: actin binding | 2.75E-02 |
| 78 | GO:0051082: unfolded protein binding | 2.81E-02 |
| 79 | GO:0015035: protein disulfide oxidoreductase activity | 2.87E-02 |
| 80 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.36E-02 |
| 81 | GO:0008565: protein transporter activity | 3.75E-02 |
| 82 | GO:0015297: antiporter activity | 4.01E-02 |
| 83 | GO:0042802: identical protein binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.21E-17 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 5.66E-16 |
| 3 | GO:0009941: chloroplast envelope | 3.07E-12 |
| 4 | GO:0009579: thylakoid | 1.47E-11 |
| 5 | GO:0009534: chloroplast thylakoid | 3.75E-10 |
| 6 | GO:0010287: plastoglobule | 1.04E-09 |
| 7 | GO:0009517: PSII associated light-harvesting complex II | 1.44E-08 |
| 8 | GO:0030076: light-harvesting complex | 3.71E-08 |
| 9 | GO:0009570: chloroplast stroma | 3.25E-06 |
| 10 | GO:0009522: photosystem I | 2.09E-05 |
| 11 | GO:0009523: photosystem II | 2.35E-05 |
| 12 | GO:0009706: chloroplast inner membrane | 2.49E-05 |
| 13 | GO:0009782: photosystem I antenna complex | 7.90E-05 |
| 14 | GO:0009515: granal stacked thylakoid | 7.90E-05 |
| 15 | GO:0045239: tricarboxylic acid cycle enzyme complex | 7.90E-05 |
| 16 | GO:0031304: intrinsic component of mitochondrial inner membrane | 1.89E-04 |
| 17 | GO:0009569: chloroplast starch grain | 1.89E-04 |
| 18 | GO:0042651: thylakoid membrane | 2.59E-04 |
| 19 | GO:0030286: dynein complex | 6.09E-04 |
| 20 | GO:0031977: thylakoid lumen | 1.57E-03 |
| 21 | GO:0048046: apoplast | 1.60E-03 |
| 22 | GO:0005938: cell cortex | 3.18E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 4.61E-03 |
| 24 | GO:0015629: actin cytoskeleton | 5.56E-03 |
| 25 | GO:0005770: late endosome | 6.92E-03 |
| 26 | GO:0019898: extrinsic component of membrane | 7.64E-03 |
| 27 | GO:0005778: peroxisomal membrane | 9.56E-03 |
| 28 | GO:0010319: stromule | 9.56E-03 |
| 29 | GO:0031969: chloroplast membrane | 1.06E-02 |
| 30 | GO:0031902: late endosome membrane | 1.67E-02 |
| 31 | GO:0005887: integral component of plasma membrane | 2.13E-02 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 2.52E-02 |
| 33 | GO:0022626: cytosolic ribosome | 2.67E-02 |
| 34 | GO:0016020: membrane | 2.71E-02 |
| 35 | GO:0005777: peroxisome | 3.20E-02 |
| 36 | GO:0009543: chloroplast thylakoid lumen | 3.30E-02 |
| 37 | GO:0005623: cell | 3.36E-02 |
| 38 | GO:0005759: mitochondrial matrix | 3.88E-02 |
| 39 | GO:0009705: plant-type vacuole membrane | 4.14E-02 |