co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:2000469: negative regulation of peroxidase activity	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0016118: carotenoid catabolic process	0.00E+00
9	GO:0006114: glycerol biosynthetic process	0.00E+00
10	GO:0009769: photosynthesis, light harvesting in photosystem II	1.28E-09
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.47E-09
12	GO:0015979: photosynthesis	8.78E-09
13	GO:0018298: protein-chromophore linkage	9.26E-08
14	GO:0009645: response to low light intensity stimulus	3.27E-07
15	GO:0009644: response to high light intensity	4.45E-07
16	GO:0010114: response to red light	1.20E-05
17	GO:0009269: response to desiccation	1.31E-05
18	GO:0010196: nonphotochemical quenching	4.27E-05
19	GO:0009642: response to light intensity	5.57E-05
20	GO:0010206: photosystem II repair	8.74E-05
21	GO:0043686: co-translational protein modification	9.88E-05
22	GO:0043609: regulation of carbon utilization	9.88E-05
23	GO:0043007: maintenance of rDNA	9.88E-05
24	GO:0046520: sphingoid biosynthetic process	9.88E-05
25	GO:0010218: response to far red light	1.27E-04
26	GO:0019684: photosynthesis, light reaction	1.48E-04
27	GO:0043085: positive regulation of catalytic activity	1.48E-04
28	GO:0009773: photosynthetic electron transport in photosystem I	1.48E-04
29	GO:0035304: regulation of protein dephosphorylation	2.32E-04
30	GO:0016560: protein import into peroxisome matrix, docking	2.32E-04
31	GO:0016124: xanthophyll catabolic process	2.32E-04
32	GO:0010042: response to manganese ion	2.32E-04
33	GO:0006432: phenylalanyl-tRNA aminoacylation	2.32E-04
34	GO:0019395: fatty acid oxidation	2.32E-04
35	GO:0016121: carotene catabolic process	2.32E-04
36	GO:0009416: response to light stimulus	2.93E-04
37	GO:0090391: granum assembly	3.86E-04
38	GO:1902448: positive regulation of shade avoidance	3.86E-04
39	GO:0006000: fructose metabolic process	3.86E-04
40	GO:0019748: secondary metabolic process	4.20E-04
41	GO:0006515: misfolded or incompletely synthesized protein catabolic process	5.54E-04
42	GO:0006662: glycerol ether metabolic process	6.24E-04
43	GO:0006814: sodium ion transport	6.69E-04
44	GO:0030104: water homeostasis	7.37E-04
45	GO:0006021: inositol biosynthetic process	7.37E-04
46	GO:0010021: amylopectin biosynthetic process	7.37E-04
47	GO:0009765: photosynthesis, light harvesting	7.37E-04
48	GO:0006109: regulation of carbohydrate metabolic process	7.37E-04
49	GO:0015994: chlorophyll metabolic process	7.37E-04
50	GO:0031365: N-terminal protein amino acid modification	9.32E-04
51	GO:0016123: xanthophyll biosynthetic process	9.32E-04
52	GO:0016120: carotene biosynthetic process	9.32E-04
53	GO:0010027: thylakoid membrane organization	1.09E-03
54	GO:0009635: response to herbicide	1.14E-03
55	GO:0042549: photosystem II stabilization	1.14E-03
56	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.14E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.14E-03
58	GO:0016311: dephosphorylation	1.33E-03
59	GO:0030488: tRNA methylation	1.36E-03
60	GO:0030026: cellular manganese ion homeostasis	1.59E-03
61	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.59E-03
62	GO:0030307: positive regulation of cell growth	1.59E-03
63	GO:0048527: lateral root development	1.61E-03
64	GO:0009637: response to blue light	1.77E-03
65	GO:0030091: protein repair	1.84E-03
66	GO:0034599: cellular response to oxidative stress	1.84E-03
67	GO:0005978: glycogen biosynthetic process	1.84E-03
68	GO:0006002: fructose 6-phosphate metabolic process	2.10E-03
69	GO:0009640: photomorphogenesis	2.27E-03
70	GO:0090333: regulation of stomatal closure	2.37E-03
71	GO:0006754: ATP biosynthetic process	2.37E-03
72	GO:0055114: oxidation-reduction process	2.56E-03
73	GO:0005982: starch metabolic process	2.65E-03
74	GO:0010205: photoinhibition	2.65E-03
75	GO:0009688: abscisic acid biosynthetic process	2.95E-03
76	GO:0048829: root cap development	2.95E-03
77	GO:0031627: telomeric loop formation	2.95E-03
78	GO:0009089: lysine biosynthetic process via diaminopimelate	3.25E-03
79	GO:0009073: aromatic amino acid family biosynthetic process	3.25E-03
80	GO:0016485: protein processing	3.25E-03
81	GO:0005983: starch catabolic process	3.57E-03
82	GO:0010628: positive regulation of gene expression	3.89E-03
83	GO:0010207: photosystem II assembly	4.22E-03
84	GO:0046688: response to copper ion	4.57E-03
85	GO:0090351: seedling development	4.57E-03
86	GO:0006833: water transport	4.92E-03
87	GO:0008299: isoprenoid biosynthetic process	5.65E-03
88	GO:0031408: oxylipin biosynthetic process	6.03E-03
89	GO:0019915: lipid storage	6.03E-03
90	GO:0040007: growth	6.82E-03
91	GO:0071215: cellular response to abscisic acid stimulus	6.82E-03
92	GO:0009409: response to cold	7.20E-03
93	GO:0009561: megagametogenesis	7.23E-03
94	GO:0016117: carotenoid biosynthetic process	7.64E-03
95	GO:0034220: ion transmembrane transport	8.07E-03
96	GO:0010182: sugar mediated signaling pathway	8.50E-03
97	GO:0009646: response to absence of light	8.94E-03
98	GO:0019252: starch biosynthetic process	9.39E-03
99	GO:0008654: phospholipid biosynthetic process	9.39E-03
100	GO:0071554: cell wall organization or biogenesis	9.85E-03
101	GO:1901657: glycosyl compound metabolic process	1.08E-02
102	GO:0010252: auxin homeostasis	1.13E-02
103	GO:0051607: defense response to virus	1.23E-02
104	GO:0048573: photoperiodism, flowering	1.43E-02
105	GO:0015995: chlorophyll biosynthetic process	1.43E-02
106	GO:0006499: N-terminal protein myristoylation	1.65E-02
107	GO:0009834: plant-type secondary cell wall biogenesis	1.65E-02
108	GO:0010119: regulation of stomatal movement	1.71E-02
109	GO:0045454: cell redox homeostasis	1.71E-02
110	GO:0009408: response to heat	2.11E-02
111	GO:0042542: response to hydrogen peroxide	2.12E-02
112	GO:0006812: cation transport	2.57E-02
113	GO:0043086: negative regulation of catalytic activity	3.04E-02
114	GO:0006810: transport	3.11E-02
115	GO:0005975: carbohydrate metabolic process	3.24E-02
116	GO:0009624: response to nematode	3.47E-02
117	GO:0006396: RNA processing	3.54E-02
118	GO:0055085: transmembrane transport	4.74E-02
119	GO:0016036: cellular response to phosphate starvation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0010486: manganese:proton antiporter activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
6	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0016166: phytoene dehydrogenase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
11	GO:0031409: pigment binding	8.01E-10
12	GO:0016168: chlorophyll binding	5.14E-08
13	GO:0000170: sphingosine hydroxylase activity	9.88E-05
14	GO:0010242: oxygen evolving activity	9.88E-05
15	GO:0042586: peptide deformylase activity	9.88E-05
16	GO:0008047: enzyme activator activity	1.26E-04
17	GO:0031072: heat shock protein binding	1.98E-04
18	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.32E-04
19	GO:0019172: glyoxalase III activity	2.32E-04
20	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.32E-04
21	GO:0047746: chlorophyllase activity	2.32E-04
22	GO:0042284: sphingolipid delta-4 desaturase activity	2.32E-04
23	GO:0004826: phenylalanine-tRNA ligase activity	2.32E-04
24	GO:0003988: acetyl-CoA C-acyltransferase activity	2.32E-04
25	GO:0004512: inositol-3-phosphate synthase activity	2.32E-04
26	GO:0070402: NADPH binding	3.86E-04
27	GO:0043169: cation binding	3.86E-04
28	GO:0047134: protein-disulfide reductase activity	5.38E-04
29	GO:0008508: bile acid:sodium symporter activity	5.54E-04
30	GO:0016851: magnesium chelatase activity	5.54E-04
31	GO:0004791: thioredoxin-disulfide reductase activity	6.69E-04
32	GO:0046872: metal ion binding	7.07E-04
33	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.66E-04
34	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	9.32E-04
35	GO:0004462: lactoylglutathione lyase activity	1.14E-03
36	GO:2001070: starch binding	1.14E-03
37	GO:0004017: adenylate kinase activity	1.36E-03
38	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.36E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	1.84E-03
40	GO:0008173: RNA methyltransferase activity	2.10E-03
41	GO:0004185: serine-type carboxypeptidase activity	2.27E-03
42	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.37E-03
43	GO:0071949: FAD binding	2.37E-03
44	GO:0005198: structural molecule activity	2.54E-03
45	GO:0005384: manganese ion transmembrane transporter activity	2.65E-03
46	GO:0003691: double-stranded telomeric DNA binding	3.25E-03
47	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.57E-03
48	GO:0000049: tRNA binding	3.57E-03
49	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.70E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	3.89E-03
51	GO:0004565: beta-galactosidase activity	3.89E-03
52	GO:0016787: hydrolase activity	3.92E-03
53	GO:0008266: poly(U) RNA binding	4.22E-03
54	GO:0051082: unfolded protein binding	4.31E-03
55	GO:0015035: protein disulfide oxidoreductase activity	4.44E-03
56	GO:0003712: transcription cofactor activity	4.57E-03
57	GO:0004857: enzyme inhibitor activity	5.28E-03
58	GO:0008324: cation transmembrane transporter activity	5.65E-03
59	GO:0004176: ATP-dependent peptidase activity	6.03E-03
60	GO:0003756: protein disulfide isomerase activity	7.23E-03
61	GO:0008514: organic anion transmembrane transporter activity	7.23E-03
62	GO:0016853: isomerase activity	8.94E-03
63	GO:0016413: O-acetyltransferase activity	1.23E-02
64	GO:0015250: water channel activity	1.28E-02
65	GO:0102483: scopolin beta-glucosidase activity	1.43E-02
66	GO:0008236: serine-type peptidase activity	1.49E-02
67	GO:0030145: manganese ion binding	1.71E-02
68	GO:0003746: translation elongation factor activity	1.82E-02
69	GO:0003993: acid phosphatase activity	1.88E-02
70	GO:0008422: beta-glucosidase activity	1.94E-02
71	GO:0015293: symporter activity	2.37E-02
72	GO:0004650: polygalacturonase activity	3.25E-02
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.15E-02
74	GO:0016829: lyase activity	4.30E-02
75	GO:0004252: serine-type endopeptidase activity	4.38E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	4.62E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0043233: organelle lumen	0.00E+00
2	GO:0009534: chloroplast thylakoid	4.05E-21
3	GO:0009507: chloroplast	7.81E-20
4	GO:0009535: chloroplast thylakoid membrane	1.81E-17
5	GO:0009579: thylakoid	3.37E-12
6	GO:0009570: chloroplast stroma	3.21E-11
7	GO:0010287: plastoglobule	7.33E-11
8	GO:0009522: photosystem I	1.03E-08
9	GO:0009517: PSII associated light-harvesting complex II	2.47E-08
10	GO:0030076: light-harvesting complex	7.30E-08
11	GO:0009941: chloroplast envelope	3.69E-07
12	GO:0009523: photosystem II	8.68E-07
13	GO:0009543: chloroplast thylakoid lumen	3.69E-06
14	GO:0031977: thylakoid lumen	1.02E-05
15	GO:0009515: granal stacked thylakoid	9.88E-05
16	GO:0009783: photosystem II antenna complex	9.88E-05
17	GO:0030095: chloroplast photosystem II	2.25E-04
18	GO:0043036: starch grain	2.32E-04
19	GO:0009654: photosystem II oxygen evolving complex	3.49E-04
20	GO:0005782: peroxisomal matrix	3.86E-04
21	GO:0010007: magnesium chelatase complex	3.86E-04
22	GO:0009509: chromoplast	3.86E-04
23	GO:0019898: extrinsic component of membrane	7.16E-04
24	GO:0009501: amyloplast	1.84E-03
25	GO:0000783: nuclear telomere cap complex	2.10E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-03
27	GO:0005623: cell	5.53E-03
28	GO:0042651: thylakoid membrane	5.65E-03
29	GO:0005770: late endosome	8.50E-03
30	GO:0031902: late endosome membrane	2.06E-02
31	GO:0016021: integral component of membrane	3.35E-02
32	GO:0009706: chloroplast inner membrane	3.47E-02
33	GO:0005777: peroxisome	4.29E-02
34	GO:0005759: mitochondrial matrix	4.78E-02