Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G22980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0030155: regulation of cell adhesion0.00E+00
3GO:0090706: specification of plant organ position0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0080127: fruit septum development0.00E+00
7GO:1905177: tracheary element differentiation0.00E+00
8GO:0015727: lactate transport0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.26E-06
11GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process1.06E-04
12GO:0005980: glycogen catabolic process1.06E-04
13GO:0000476: maturation of 4.5S rRNA1.06E-04
14GO:0000967: rRNA 5'-end processing1.06E-04
15GO:0060261: positive regulation of transcription initiation from RNA polymerase II promoter1.06E-04
16GO:0043007: maintenance of rDNA1.06E-04
17GO:0010028: xanthophyll cycle1.06E-04
18GO:0010450: inflorescence meristem growth1.06E-04
19GO:0009773: photosynthetic electron transport in photosystem I1.65E-04
20GO:0031648: protein destabilization2.48E-04
21GO:0016122: xanthophyll metabolic process2.48E-04
22GO:0006521: regulation of cellular amino acid metabolic process2.48E-04
23GO:0051262: protein tetramerization2.48E-04
24GO:0034470: ncRNA processing2.48E-04
25GO:0009944: polarity specification of adaxial/abaxial axis3.49E-04
26GO:0048281: inflorescence morphogenesis4.12E-04
27GO:0010623: programmed cell death involved in cell development4.12E-04
28GO:0045165: cell fate commitment4.12E-04
29GO:0010148: transpiration5.92E-04
30GO:0010306: rhamnogalacturonan II biosynthetic process5.92E-04
31GO:1901332: negative regulation of lateral root development5.92E-04
32GO:0051322: anaphase7.86E-04
33GO:0006109: regulation of carbohydrate metabolic process7.86E-04
34GO:0015994: chlorophyll metabolic process7.86E-04
35GO:0010600: regulation of auxin biosynthetic process7.86E-04
36GO:0006552: leucine catabolic process7.86E-04
37GO:0010508: positive regulation of autophagy7.86E-04
38GO:0015846: polyamine transport7.86E-04
39GO:0010021: amylopectin biosynthetic process7.86E-04
40GO:0010158: abaxial cell fate specification9.92E-04
41GO:0006465: signal peptide processing9.92E-04
42GO:1902183: regulation of shoot apical meristem development9.92E-04
43GO:0003006: developmental process involved in reproduction1.21E-03
44GO:0042549: photosystem II stabilization1.21E-03
45GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.45E-03
46GO:0042372: phylloquinone biosynthetic process1.45E-03
47GO:0070370: cellular heat acclimation1.70E-03
48GO:0022904: respiratory electron transport chain1.70E-03
49GO:0010103: stomatal complex morphogenesis1.70E-03
50GO:0010161: red light signaling pathway1.70E-03
51GO:0009631: cold acclimation1.78E-03
52GO:0010928: regulation of auxin mediated signaling pathway1.97E-03
53GO:0005978: glycogen biosynthetic process1.97E-03
54GO:0006353: DNA-templated transcription, termination1.97E-03
55GO:0009704: de-etiolation1.97E-03
56GO:0009409: response to cold2.09E-03
57GO:0001558: regulation of cell growth2.24E-03
58GO:0010093: specification of floral organ identity2.24E-03
59GO:0048507: meristem development2.53E-03
60GO:0051865: protein autoubiquitination2.53E-03
61GO:2000024: regulation of leaf development2.53E-03
62GO:0005982: starch metabolic process2.84E-03
63GO:0019684: photosynthesis, light reaction3.47E-03
64GO:0009089: lysine biosynthetic process via diaminopimelate3.47E-03
65GO:0043085: positive regulation of catalytic activity3.47E-03
66GO:0009684: indoleacetic acid biosynthetic process3.47E-03
67GO:0010015: root morphogenesis3.47E-03
68GO:0010582: floral meristem determinacy3.81E-03
69GO:0071365: cellular response to auxin stimulus3.81E-03
70GO:0010102: lateral root morphogenesis4.16E-03
71GO:0018107: peptidyl-threonine phosphorylation4.16E-03
72GO:0048467: gynoecium development4.52E-03
73GO:0009933: meristem structural organization4.52E-03
74GO:0009266: response to temperature stimulus4.52E-03
75GO:0010030: positive regulation of seed germination4.88E-03
76GO:0009414: response to water deprivation5.10E-03
77GO:0006418: tRNA aminoacylation for protein translation6.05E-03
78GO:0007017: microtubule-based process6.05E-03
79GO:0051302: regulation of cell division6.05E-03
80GO:0019915: lipid storage6.46E-03
81GO:0061077: chaperone-mediated protein folding6.46E-03
82GO:0003333: amino acid transmembrane transport6.46E-03
83GO:0010017: red or far-red light signaling pathway6.87E-03
84GO:2000022: regulation of jasmonic acid mediated signaling pathway6.87E-03
85GO:0009686: gibberellin biosynthetic process7.30E-03
86GO:0001944: vasculature development7.30E-03
87GO:0010089: xylem development7.74E-03
88GO:0009789: positive regulation of abscisic acid-activated signaling pathway8.19E-03
89GO:0045490: pectin catabolic process8.20E-03
90GO:0042631: cellular response to water deprivation8.64E-03
91GO:0010154: fruit development9.10E-03
92GO:0006662: glycerol ether metabolic process9.10E-03
93GO:0048868: pollen tube development9.10E-03
94GO:0006810: transport9.47E-03
95GO:0009646: response to absence of light9.58E-03
96GO:0019252: starch biosynthetic process1.01E-02
97GO:0010583: response to cyclopentenone1.11E-02
98GO:0032502: developmental process1.11E-02
99GO:0071281: cellular response to iron ion1.16E-02
100GO:1901657: glycosyl compound metabolic process1.16E-02
101GO:0000910: cytokinesis1.31E-02
102GO:0016126: sterol biosynthetic process1.37E-02
103GO:0006970: response to osmotic stress1.37E-02
104GO:0001666: response to hypoxia1.37E-02
105GO:0009607: response to biotic stimulus1.42E-02
106GO:0009627: systemic acquired resistance1.48E-02
107GO:0015995: chlorophyll biosynthetic process1.54E-02
108GO:0016311: dephosphorylation1.59E-02
109GO:0010218: response to far red light1.77E-02
110GO:0015979: photosynthesis1.80E-02
111GO:0055114: oxidation-reduction process1.92E-02
112GO:0034599: cellular response to oxidative stress2.02E-02
113GO:0006869: lipid transport2.07E-02
114GO:0006631: fatty acid metabolic process2.21E-02
115GO:0010114: response to red light2.34E-02
116GO:0009733: response to auxin2.52E-02
117GO:0009965: leaf morphogenesis2.54E-02
118GO:0008152: metabolic process2.57E-02
119GO:0009664: plant-type cell wall organization2.75E-02
120GO:0009585: red, far-red light phototransduction2.89E-02
121GO:0009909: regulation of flower development3.11E-02
122GO:0043086: negative regulation of catalytic activity3.26E-02
123GO:0009734: auxin-activated signaling pathway3.28E-02
124GO:0009740: gibberellic acid mediated signaling pathway3.56E-02
125GO:0009735: response to cytokinin3.78E-02
126GO:0018105: peptidyl-serine phosphorylation3.80E-02
127GO:0006351: transcription, DNA-templated3.89E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
3GO:0043864: indoleacetamide hydrolase activity0.00E+00
4GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
5GO:0048039: ubiquinone binding0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0009899: ent-kaurene synthase activity0.00E+00
8GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
9GO:0015129: lactate transmembrane transporter activity0.00E+00
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.95E-06
11GO:0005227: calcium activated cation channel activity1.06E-04
12GO:0008184: glycogen phosphorylase activity1.06E-04
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity1.06E-04
14GO:0004645: phosphorylase activity1.06E-04
15GO:0003844: 1,4-alpha-glucan branching enzyme activity2.48E-04
16GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase2.48E-04
17GO:0016868: intramolecular transferase activity, phosphotransferases2.48E-04
18GO:0043169: cation binding4.12E-04
19GO:0030570: pectate lyase activity5.04E-04
20GO:0015203: polyamine transmembrane transporter activity5.92E-04
21GO:0016851: magnesium chelatase activity5.92E-04
22GO:0004506: squalene monooxygenase activity7.86E-04
23GO:0019199: transmembrane receptor protein kinase activity7.86E-04
24GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds7.86E-04
25GO:0042277: peptide binding7.86E-04
26GO:0048038: quinone binding8.40E-04
27GO:0004040: amidase activity9.92E-04
28GO:0016208: AMP binding1.21E-03
29GO:0005261: cation channel activity1.45E-03
30GO:0004033: aldo-keto reductase (NADP) activity1.97E-03
31GO:0043621: protein self-association2.70E-03
32GO:0051537: 2 iron, 2 sulfur cluster binding2.70E-03
33GO:0015174: basic amino acid transmembrane transporter activity2.84E-03
34GO:0008047: enzyme activator activity3.15E-03
35GO:0044183: protein binding involved in protein folding3.47E-03
36GO:0005528: FK506 binding5.65E-03
37GO:0004857: enzyme inhibitor activity5.65E-03
38GO:0016829: lyase activity6.42E-03
39GO:0047134: protein-disulfide reductase activity8.19E-03
40GO:0004812: aminoacyl-tRNA ligase activity8.19E-03
41GO:0003713: transcription coactivator activity9.10E-03
42GO:0004791: thioredoxin-disulfide reductase activity9.58E-03
43GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.16E-02
44GO:0005200: structural constituent of cytoskeleton1.26E-02
45GO:0016597: amino acid binding1.31E-02
46GO:0015250: water channel activity1.37E-02
47GO:0102483: scopolin beta-glucosidase activity1.54E-02
48GO:0003700: transcription factor activity, sequence-specific DNA binding1.77E-02
49GO:0003993: acid phosphatase activity2.02E-02
50GO:0008422: beta-glucosidase activity2.08E-02
51GO:0043565: sequence-specific DNA binding2.10E-02
52GO:0051539: 4 iron, 4 sulfur cluster binding2.14E-02
53GO:0044212: transcription regulatory region DNA binding2.18E-02
54GO:0003924: GTPase activity2.33E-02
55GO:0009055: electron carrier activity2.50E-02
56GO:0015293: symporter activity2.54E-02
57GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.61E-02
58GO:0016491: oxidoreductase activity3.07E-02
59GO:0008289: lipid binding3.24E-02
60GO:0015035: protein disulfide oxidoreductase activity3.80E-02
61GO:0030170: pyridoxal phosphate binding4.70E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0009507: chloroplast2.99E-08
3GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.27E-06
4GO:0009535: chloroplast thylakoid membrane7.24E-05
5GO:0009570: chloroplast stroma9.83E-05
6GO:0005787: signal peptidase complex1.06E-04
7GO:0010007: magnesium chelatase complex4.12E-04
8GO:0009534: chloroplast thylakoid4.98E-04
9GO:0031305: integral component of mitochondrial inner membrane1.97E-03
10GO:0009501: amyloplast1.97E-03
11GO:0045298: tubulin complex2.53E-03
12GO:0005740: mitochondrial envelope3.15E-03
13GO:0009574: preprophase band4.16E-03
14GO:0030095: chloroplast photosystem II4.52E-03
15GO:0009543: chloroplast thylakoid lumen5.94E-03
16GO:0009654: photosystem II oxygen evolving complex6.05E-03
17GO:0042651: thylakoid membrane6.05E-03
18GO:0019898: extrinsic component of membrane1.01E-02
19GO:0005778: peroxisomal membrane1.26E-02
20GO:0010319: stromule1.26E-02
21GO:0005667: transcription factor complex1.48E-02
22GO:0005874: microtubule1.52E-02
23GO:0031977: thylakoid lumen2.21E-02
24GO:0031966: mitochondrial membrane2.75E-02
25GO:0009536: plastid2.81E-02
26GO:0005887: integral component of plasma membrane3.17E-02
27GO:0005834: heterotrimeric G-protein complex3.41E-02
28GO:0010287: plastoglobule4.20E-02
29GO:0009524: phragmoplast4.53E-02
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Gene type



Gene DE type