co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0071284: cellular response to lead ion	0.00E+00
3	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
4	GO:0036172: thiamine salvage	0.00E+00
5	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
6	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
7	GO:0045740: positive regulation of DNA replication	0.00E+00
8	GO:0006720: isoprenoid metabolic process	0.00E+00
9	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.82E-08
10	GO:0016226: iron-sulfur cluster assembly	1.44E-05
11	GO:0009853: photorespiration	2.25E-05
12	GO:0006555: methionine metabolic process	1.88E-04
13	GO:0019509: L-methionine salvage from methylthioadenosine	2.54E-04
14	GO:0006012: galactose metabolic process	2.89E-04
15	GO:0000066: mitochondrial ornithine transport	3.70E-04
16	GO:0016487: farnesol metabolic process	3.70E-04
17	GO:0016031: tRNA import into mitochondrion	3.70E-04
18	GO:0009240: isopentenyl diphosphate biosynthetic process	3.70E-04
19	GO:0043407: negative regulation of MAP kinase activity	3.70E-04
20	GO:0031468: nuclear envelope reassembly	3.70E-04
21	GO:0015991: ATP hydrolysis coupled proton transport	4.00E-04
22	GO:0006432: phenylalanyl-tRNA aminoacylation	8.05E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.05E-04
24	GO:2000071: regulation of defense response by callose deposition	8.05E-04
25	GO:0019441: tryptophan catabolic process to kynurenine	8.05E-04
26	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.05E-04
27	GO:0000398: mRNA splicing, via spliceosome	1.27E-03
28	GO:0010476: gibberellin mediated signaling pathway	1.30E-03
29	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.30E-03
30	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.30E-03
31	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.30E-03
32	GO:0034051: negative regulation of plant-type hypersensitive response	1.30E-03
33	GO:0008333: endosome to lysosome transport	1.30E-03
34	GO:0046417: chorismate metabolic process	1.30E-03
35	GO:0015940: pantothenate biosynthetic process	1.30E-03
36	GO:0071492: cellular response to UV-A	1.30E-03
37	GO:0006760: folic acid-containing compound metabolic process	1.30E-03
38	GO:0048527: lateral root development	1.54E-03
39	GO:0010039: response to iron ion	1.57E-03
40	GO:0034599: cellular response to oxidative stress	1.84E-03
41	GO:0006107: oxaloacetate metabolic process	1.88E-03
42	GO:0009647: skotomorphogenesis	1.88E-03
43	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.88E-03
44	GO:0009399: nitrogen fixation	1.88E-03
45	GO:1901332: negative regulation of lateral root development	1.88E-03
46	GO:0009963: positive regulation of flavonoid biosynthetic process	1.88E-03
47	GO:0006516: glycoprotein catabolic process	1.88E-03
48	GO:0006406: mRNA export from nucleus	1.93E-03
49	GO:0015976: carbon utilization	2.52E-03
50	GO:0071486: cellular response to high light intensity	2.52E-03
51	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.52E-03
52	GO:0009765: photosynthesis, light harvesting	2.52E-03
53	GO:0071249: cellular response to nitrate	2.52E-03
54	GO:0006221: pyrimidine nucleotide biosynthetic process	2.52E-03
55	GO:0009649: entrainment of circadian clock	2.52E-03
56	GO:0006542: glutamine biosynthetic process	2.52E-03
57	GO:0009755: hormone-mediated signaling pathway	2.52E-03
58	GO:0018344: protein geranylgeranylation	3.23E-03
59	GO:0046283: anthocyanin-containing compound metabolic process	3.23E-03
60	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.23E-03
61	GO:0009229: thiamine diphosphate biosynthetic process	3.23E-03
62	GO:0042147: retrograde transport, endosome to Golgi	3.30E-03
63	GO:0006662: glycerol ether metabolic process	3.84E-03
64	GO:0016070: RNA metabolic process	3.99E-03
65	GO:0043248: proteasome assembly	3.99E-03
66	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.99E-03
67	GO:0031053: primary miRNA processing	3.99E-03
68	GO:0033365: protein localization to organelle	3.99E-03
69	GO:0007035: vacuolar acidification	3.99E-03
70	GO:0006574: valine catabolic process	3.99E-03
71	GO:0009228: thiamine biosynthetic process	3.99E-03
72	GO:0000054: ribosomal subunit export from nucleus	4.81E-03
73	GO:0048444: floral organ morphogenesis	4.81E-03
74	GO:0055114: oxidation-reduction process	5.00E-03
75	GO:0015031: protein transport	5.38E-03
76	GO:0007050: cell cycle arrest	5.68E-03
77	GO:0022904: respiratory electron transport chain	5.68E-03
78	GO:0006826: iron ion transport	5.68E-03
79	GO:0000082: G1/S transition of mitotic cell cycle	5.68E-03
80	GO:0032880: regulation of protein localization	5.68E-03
81	GO:0006914: autophagy	5.75E-03
82	GO:0045292: mRNA cis splicing, via spliceosome	6.61E-03
83	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.61E-03
84	GO:0006506: GPI anchor biosynthetic process	6.61E-03
85	GO:0000028: ribosomal small subunit assembly	6.61E-03
86	GO:0010099: regulation of photomorphogenesis	7.58E-03
87	GO:0015996: chlorophyll catabolic process	7.58E-03
88	GO:0001510: RNA methylation	7.58E-03
89	GO:0010204: defense response signaling pathway, resistance gene-independent	7.58E-03
90	GO:0045454: cell redox homeostasis	8.35E-03
91	GO:0098656: anion transmembrane transport	8.60E-03
92	GO:0046916: cellular transition metal ion homeostasis	8.60E-03
93	GO:0006754: ATP biosynthetic process	8.60E-03
94	GO:0048589: developmental growth	8.60E-03
95	GO:0009056: catabolic process	8.60E-03
96	GO:0006886: intracellular protein transport	8.75E-03
97	GO:0010311: lateral root formation	9.44E-03
98	GO:0010267: production of ta-siRNAs involved in RNA interference	9.67E-03
99	GO:0007346: regulation of mitotic cell cycle	9.67E-03
100	GO:0010043: response to zinc ion	1.04E-02
101	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.08E-02
102	GO:0000103: sulfate assimilation	1.08E-02
103	GO:0045036: protein targeting to chloroplast	1.08E-02
104	GO:0009641: shade avoidance	1.08E-02
105	GO:0006099: tricarboxylic acid cycle	1.19E-02
106	GO:0010015: root morphogenesis	1.19E-02
107	GO:0072593: reactive oxygen species metabolic process	1.19E-02
108	GO:0009682: induced systemic resistance	1.19E-02
109	GO:0009073: aromatic amino acid family biosynthetic process	1.19E-02
110	GO:0030148: sphingolipid biosynthetic process	1.19E-02
111	GO:0030001: metal ion transport	1.30E-02
112	GO:0006839: mitochondrial transport	1.30E-02
113	GO:0010152: pollen maturation	1.32E-02
114	GO:0016925: protein sumoylation	1.32E-02
115	GO:0008152: metabolic process	1.33E-02
116	GO:0006829: zinc II ion transport	1.44E-02
117	GO:0010102: lateral root morphogenesis	1.44E-02
118	GO:0006108: malate metabolic process	1.44E-02
119	GO:0006807: nitrogen compound metabolic process	1.44E-02
120	GO:0009691: cytokinin biosynthetic process	1.44E-02
121	GO:0048440: carpel development	1.57E-02
122	GO:0002237: response to molecule of bacterial origin	1.57E-02
123	GO:0007030: Golgi organization	1.70E-02
124	GO:0034976: response to endoplasmic reticulum stress	1.84E-02
125	GO:0006487: protein N-linked glycosylation	1.98E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	1.98E-02
127	GO:0009585: red, far-red light phototransduction	1.99E-02
128	GO:0006810: transport	2.01E-02
129	GO:0010224: response to UV-B	2.06E-02
130	GO:0051302: regulation of cell division	2.12E-02
131	GO:0008299: isoprenoid biosynthetic process	2.12E-02
132	GO:0006825: copper ion transport	2.12E-02
133	GO:0010431: seed maturation	2.27E-02
134	GO:0061077: chaperone-mediated protein folding	2.27E-02
135	GO:0015992: proton transport	2.27E-02
136	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.42E-02
137	GO:0007005: mitochondrion organization	2.42E-02
138	GO:0048443: stamen development	2.73E-02
139	GO:0006979: response to oxidative stress	2.80E-02
140	GO:0035556: intracellular signal transduction	2.93E-02
141	GO:0051726: regulation of cell cycle	3.01E-02
142	GO:0010118: stomatal movement	3.06E-02
143	GO:0006606: protein import into nucleus	3.06E-02
144	GO:0080022: primary root development	3.06E-02
145	GO:0034220: ion transmembrane transport	3.06E-02
146	GO:0010154: fruit development	3.23E-02
147	GO:0010182: sugar mediated signaling pathway	3.23E-02
148	GO:0015986: ATP synthesis coupled proton transport	3.40E-02
149	GO:0061025: membrane fusion	3.40E-02
150	GO:0048825: cotyledon development	3.57E-02
151	GO:0009749: response to glucose	3.57E-02
152	GO:0008654: phospholipid biosynthetic process	3.57E-02
153	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.75E-02
154	GO:0002229: defense response to oomycetes	3.75E-02
155	GO:0010193: response to ozone	3.75E-02
156	GO:0009630: gravitropism	3.93E-02
157	GO:0031047: gene silencing by RNA	3.93E-02
158	GO:0009737: response to abscisic acid	4.01E-02
159	GO:0009651: response to salt stress	4.08E-02
160	GO:0010090: trichome morphogenesis	4.11E-02
161	GO:0010286: heat acclimation	4.49E-02
162	GO:0016126: sterol biosynthetic process	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0052668: farnesol kinase activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
4	GO:0052671: geranylgeraniol kinase activity	0.00E+00
5	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0052670: geraniol kinase activity	0.00E+00
8	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.39E-06
9	GO:0004034: aldose 1-epimerase activity	1.33E-05
10	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.16E-05
11	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.40E-05
12	GO:0004298: threonine-type endopeptidase activity	2.26E-04
13	GO:0008143: poly(A) binding	3.30E-04
14	GO:0033549: MAP kinase phosphatase activity	3.70E-04
15	GO:0004560: alpha-L-fucosidase activity	3.70E-04
16	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.70E-04
17	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	3.70E-04
18	GO:0047560: 3-dehydrosphinganine reductase activity	3.70E-04
19	GO:0019707: protein-cysteine S-acyltransferase activity	3.70E-04
20	GO:0102293: pheophytinase b activity	3.70E-04
21	GO:0030941: chloroplast targeting sequence binding	3.70E-04
22	GO:0015078: hydrogen ion transmembrane transporter activity	5.06E-04
23	GO:0004106: chorismate mutase activity	8.05E-04
24	GO:0004061: arylformamidase activity	8.05E-04
25	GO:0000064: L-ornithine transmembrane transporter activity	8.05E-04
26	GO:0004826: phenylalanine-tRNA ligase activity	8.05E-04
27	GO:0047746: chlorophyllase activity	8.05E-04
28	GO:0010331: gibberellin binding	8.05E-04
29	GO:0004089: carbonate dehydratase activity	1.24E-03
30	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.30E-03
31	GO:0008430: selenium binding	1.30E-03
32	GO:0004663: Rab geranylgeranyltransferase activity	1.30E-03
33	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.30E-03
34	GO:0000254: C-4 methylsterol oxidase activity	1.88E-03
35	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.88E-03
36	GO:0004715: non-membrane spanning protein tyrosine kinase activity	1.88E-03
37	GO:0000339: RNA cap binding	1.88E-03
38	GO:0016787: hydrolase activity	2.34E-03
39	GO:0010011: auxin binding	2.52E-03
40	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.52E-03
41	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.52E-03
42	GO:0004576: oligosaccharyl transferase activity	2.52E-03
43	GO:0051537: 2 iron, 2 sulfur cluster binding	2.65E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.92E-03
45	GO:0008198: ferrous iron binding	3.23E-03
46	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.23E-03
47	GO:0016651: oxidoreductase activity, acting on NAD(P)H	3.23E-03
48	GO:0005496: steroid binding	3.23E-03
49	GO:0031386: protein tag	3.23E-03
50	GO:0004356: glutamate-ammonia ligase activity	3.23E-03
51	GO:0047134: protein-disulfide reductase activity	3.30E-03
52	GO:0008080: N-acetyltransferase activity	3.84E-03
53	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.84E-03
54	GO:0004605: phosphatidate cytidylyltransferase activity	3.99E-03
55	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.99E-03
56	GO:0051117: ATPase binding	3.99E-03
57	GO:0004791: thioredoxin-disulfide reductase activity	4.13E-03
58	GO:0016853: isomerase activity	4.13E-03
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.81E-03
60	GO:0070300: phosphatidic acid binding	4.81E-03
61	GO:0022857: transmembrane transporter activity	5.10E-03
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.40E-03
63	GO:0008320: protein transmembrane transporter activity	5.68E-03
64	GO:0015035: protein disulfide oxidoreductase activity	5.72E-03
65	GO:0046914: transition metal ion binding	7.58E-03
66	GO:0008173: RNA methyltransferase activity	7.58E-03
67	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.60E-03
68	GO:0001055: RNA polymerase II activity	9.67E-03
69	GO:0045309: protein phosphorylated amino acid binding	9.67E-03
70	GO:0047617: acyl-CoA hydrolase activity	9.67E-03
71	GO:0050897: cobalt ion binding	1.04E-02
72	GO:0008047: enzyme activator activity	1.08E-02
73	GO:0019904: protein domain specific binding	1.19E-02
74	GO:0004129: cytochrome-c oxidase activity	1.19E-02
75	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.19E-02
76	GO:0001054: RNA polymerase I activity	1.19E-02
77	GO:0003723: RNA binding	1.30E-02
78	GO:0001056: RNA polymerase III activity	1.32E-02
79	GO:0000049: tRNA binding	1.32E-02
80	GO:0015266: protein channel activity	1.44E-02
81	GO:0005315: inorganic phosphate transmembrane transporter activity	1.44E-02
82	GO:0043621: protein self-association	1.60E-02
83	GO:0005198: structural molecule activity	1.66E-02
84	GO:0051287: NAD binding	1.79E-02
85	GO:0004725: protein tyrosine phosphatase activity	1.84E-02
86	GO:0051536: iron-sulfur cluster binding	1.98E-02
87	GO:0043130: ubiquitin binding	1.98E-02
88	GO:0005528: FK506 binding	1.98E-02
89	GO:0008233: peptidase activity	2.47E-02
90	GO:0005515: protein binding	2.64E-02
91	GO:0008514: organic anion transmembrane transporter activity	2.73E-02
92	GO:0003756: protein disulfide isomerase activity	2.73E-02
93	GO:0016746: transferase activity, transferring acyl groups	2.92E-02
94	GO:0004386: helicase activity	3.09E-02
95	GO:0003824: catalytic activity	3.23E-02
96	GO:0046873: metal ion transmembrane transporter activity	3.23E-02
97	GO:0003924: GTPase activity	4.09E-02
98	GO:0008565: protein transporter activity	4.24E-02
99	GO:0016597: amino acid binding	4.68E-02
100	GO:0004842: ubiquitin-protein transferase activity	4.71E-02
101	GO:0015250: water channel activity	4.87E-02
102	GO:0051213: dioxygenase activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	5.83E-17
4	GO:0005829: cytosol	1.58E-08
5	GO:0045271: respiratory chain complex I	2.51E-07
6	GO:0031966: mitochondrial membrane	6.87E-05
7	GO:0033179: proton-transporting V-type ATPase, V0 domain	8.40E-05
8	GO:0030904: retromer complex	1.88E-04
9	GO:0005839: proteasome core complex	2.26E-04
10	GO:0000152: nuclear ubiquitin ligase complex	3.70E-04
11	GO:0005845: mRNA cap binding complex	3.70E-04
12	GO:0005662: DNA replication factor A complex	3.70E-04
13	GO:0045273: respiratory chain complex II	4.14E-04
14	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.14E-04
15	GO:0000421: autophagosome membrane	4.14E-04
16	GO:0019773: proteasome core complex, alpha-subunit complex	5.06E-04
17	GO:0000502: proteasome complex	5.98E-04
18	GO:0071011: precatalytic spliceosome	7.16E-04
19	GO:0005846: nuclear cap binding complex	8.05E-04
20	GO:0071013: catalytic step 2 spliceosome	9.61E-04
21	GO:0005789: endoplasmic reticulum membrane	9.78E-04
22	GO:0009507: chloroplast	1.01E-03
23	GO:0005838: proteasome regulatory particle	1.30E-03
24	GO:0009536: plastid	1.67E-03
25	GO:0005783: endoplasmic reticulum	1.86E-03
26	GO:1990726: Lsm1-7-Pat1 complex	1.88E-03
27	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.88E-03
28	GO:0005758: mitochondrial intermembrane space	1.93E-03
29	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	2.52E-03
30	GO:0000445: THO complex part of transcription export complex	2.52E-03
31	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.52E-03
32	GO:0031410: cytoplasmic vesicle	2.57E-03
33	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	3.23E-03
34	GO:0005746: mitochondrial respiratory chain	3.23E-03
35	GO:0008250: oligosaccharyltransferase complex	3.23E-03
36	GO:0032588: trans-Golgi network membrane	3.99E-03
37	GO:0000974: Prp19 complex	3.99E-03
38	GO:0005771: multivesicular body	3.99E-03
39	GO:0005773: vacuole	4.36E-03
40	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	5.26E-03
41	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.68E-03
42	GO:0000347: THO complex	5.68E-03
43	GO:0031359: integral component of chloroplast outer membrane	5.68E-03
44	GO:0005737: cytoplasm	5.79E-03
45	GO:0005732: small nucleolar ribonucleoprotein complex	6.15E-03
46	GO:0005688: U6 snRNP	6.61E-03
47	GO:0046540: U4/U6 x U5 tri-snRNP complex	7.58E-03
48	GO:0022626: cytosolic ribosome	7.64E-03
49	GO:0005736: DNA-directed RNA polymerase I complex	8.60E-03
50	GO:0005680: anaphase-promoting complex	8.60E-03
51	GO:0005763: mitochondrial small ribosomal subunit	8.60E-03
52	GO:0005739: mitochondrion	9.05E-03
53	GO:0016604: nuclear body	9.67E-03
54	GO:0005666: DNA-directed RNA polymerase III complex	9.67E-03
55	GO:0008541: proteasome regulatory particle, lid subcomplex	1.19E-02
56	GO:0005665: DNA-directed RNA polymerase II, core complex	1.32E-02
57	GO:0031902: late endosome membrane	1.36E-02
58	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.70E-02
59	GO:0000419: DNA-directed RNA polymerase V complex	1.84E-02
60	GO:0005774: vacuolar membrane	1.90E-02
61	GO:0070469: respiratory chain	2.12E-02
62	GO:0016607: nuclear speck	2.43E-02
63	GO:0031969: chloroplast membrane	2.53E-02
64	GO:0005730: nucleolus	2.62E-02
65	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.73E-02
66	GO:0005840: ribosome	2.99E-02
67	GO:0005794: Golgi apparatus	3.44E-02
68	GO:0009523: photosystem II	3.57E-02
69	GO:0005623: cell	3.64E-02
70	GO:0005743: mitochondrial inner membrane	3.75E-02
71	GO:0000785: chromatin	3.93E-02
72	GO:0016020: membrane	4.06E-02
73	GO:0032580: Golgi cisterna membrane	4.30E-02
74	GO:0005759: mitochondrial matrix	4.45E-02
75	GO:0005778: peroxisomal membrane	4.49E-02
76	GO:0000932: P-body	4.87E-02