co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G22240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0015882: L-ascorbic acid transport	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0034337: RNA folding	0.00E+00
8	GO:2000505: regulation of energy homeostasis	0.00E+00
9	GO:0009715: chalcone biosynthetic process	0.00E+00
10	GO:0017038: protein import	0.00E+00
11	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
12	GO:0015979: photosynthesis	5.78E-19
13	GO:0009768: photosynthesis, light harvesting in photosystem I	2.88E-16
14	GO:0018298: protein-chromophore linkage	8.67E-15
15	GO:0010207: photosystem II assembly	9.52E-11
16	GO:0010114: response to red light	9.52E-09
17	GO:0006000: fructose metabolic process	1.40E-08
18	GO:0009769: photosynthesis, light harvesting in photosystem II	1.78E-08
19	GO:0009645: response to low light intensity stimulus	1.78E-08
20	GO:0010196: nonphotochemical quenching	1.78E-08
21	GO:0010218: response to far red light	8.31E-08
22	GO:0009773: photosynthetic electron transport in photosystem I	2.86E-07
23	GO:0006094: gluconeogenesis	5.47E-07
24	GO:0042549: photosystem II stabilization	8.86E-07
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.37E-06
26	GO:0035304: regulation of protein dephosphorylation	2.37E-06
27	GO:0009637: response to blue light	3.70E-06
28	GO:0006002: fructose 6-phosphate metabolic process	5.59E-06
29	GO:0010206: photosystem II repair	7.84E-06
30	GO:0009644: response to high light intensity	8.69E-06
31	GO:0009416: response to light stimulus	1.73E-05
32	GO:0019684: photosynthesis, light reaction	1.81E-05
33	GO:0019253: reductive pentose-phosphate cycle	3.47E-05
34	GO:0006021: inositol biosynthetic process	3.60E-05
35	GO:0016123: xanthophyll biosynthetic process	5.76E-05
36	GO:0055114: oxidation-reduction process	7.08E-05
37	GO:0009269: response to desiccation	7.94E-05
38	GO:0010189: vitamin E biosynthetic process	1.17E-04
39	GO:0009642: response to light intensity	1.97E-04
40	GO:0043953: protein transport by the Tat complex	2.25E-04
41	GO:0051775: response to redox state	2.25E-04
42	GO:0000481: maturation of 5S rRNA	2.25E-04
43	GO:0006659: phosphatidylserine biosynthetic process	2.25E-04
44	GO:0065002: intracellular protein transmembrane transport	2.25E-04
45	GO:0080093: regulation of photorespiration	2.25E-04
46	GO:0043609: regulation of carbon utilization	2.25E-04
47	GO:0043007: maintenance of rDNA	2.25E-04
48	GO:0031998: regulation of fatty acid beta-oxidation	2.25E-04
49	GO:0010028: xanthophyll cycle	2.25E-04
50	GO:0006098: pentose-phosphate shunt	2.95E-04
51	GO:0010205: photoinhibition	3.51E-04
52	GO:0010027: thylakoid membrane organization	3.67E-04
53	GO:0015995: chlorophyll biosynthetic process	4.54E-04
54	GO:0043085: positive regulation of catalytic activity	4.76E-04
55	GO:0006432: phenylalanyl-tRNA aminoacylation	5.00E-04
56	GO:0097054: L-glutamate biosynthetic process	5.00E-04
57	GO:0006729: tetrahydrobiopterin biosynthetic process	5.00E-04
58	GO:0016121: carotene catabolic process	5.00E-04
59	GO:0009629: response to gravity	5.00E-04
60	GO:0016124: xanthophyll catabolic process	5.00E-04
61	GO:0010042: response to manganese ion	5.00E-04
62	GO:0006790: sulfur compound metabolic process	5.45E-04
63	GO:0006108: malate metabolic process	6.19E-04
64	GO:0005986: sucrose biosynthetic process	6.19E-04
65	GO:0034599: cellular response to oxidative stress	7.39E-04
66	GO:0046854: phosphatidylinositol phosphorylation	7.77E-04
67	GO:0035436: triose phosphate transmembrane transport	8.13E-04
68	GO:1902448: positive regulation of shade avoidance	8.13E-04
69	GO:0090391: granum assembly	8.13E-04
70	GO:0042823: pyridoxal phosphate biosynthetic process	1.16E-03
71	GO:0006020: inositol metabolic process	1.16E-03
72	GO:0071484: cellular response to light intensity	1.16E-03
73	GO:0006107: oxaloacetate metabolic process	1.16E-03
74	GO:0006537: glutamate biosynthetic process	1.16E-03
75	GO:0009409: response to cold	1.22E-03
76	GO:0019748: secondary metabolic process	1.25E-03
77	GO:0015713: phosphoglycerate transport	1.54E-03
78	GO:0006734: NADH metabolic process	1.54E-03
79	GO:0010021: amylopectin biosynthetic process	1.54E-03
80	GO:0010109: regulation of photosynthesis	1.54E-03
81	GO:0019676: ammonia assimilation cycle	1.54E-03
82	GO:0015976: carbon utilization	1.54E-03
83	GO:0019464: glycine decarboxylation via glycine cleavage system	1.54E-03
84	GO:0009765: photosynthesis, light harvesting	1.54E-03
85	GO:0006109: regulation of carbohydrate metabolic process	1.54E-03
86	GO:0015994: chlorophyll metabolic process	1.54E-03
87	GO:0030104: water homeostasis	1.54E-03
88	GO:0006546: glycine catabolic process	1.54E-03
89	GO:0016117: carotenoid biosynthetic process	1.60E-03
90	GO:0006096: glycolytic process	1.71E-03
91	GO:0006662: glycerol ether metabolic process	1.87E-03
92	GO:0009735: response to cytokinin	1.94E-03
93	GO:0016120: carotene biosynthetic process	1.97E-03
94	GO:0010236: plastoquinone biosynthetic process	1.97E-03
95	GO:0006097: glyoxylate cycle	1.97E-03
96	GO:0006814: sodium ion transport	2.00E-03
97	GO:0019252: starch biosynthetic process	2.15E-03
98	GO:0009791: post-embryonic development	2.15E-03
99	GO:0042742: defense response to bacterium	2.25E-03
100	GO:0046855: inositol phosphate dephosphorylation	2.43E-03
101	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.43E-03
102	GO:0009635: response to herbicide	2.43E-03
103	GO:0009643: photosynthetic acclimation	2.43E-03
104	GO:0050665: hydrogen peroxide biosynthetic process	2.43E-03
105	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.43E-03
106	GO:1901259: chloroplast rRNA processing	2.91E-03
107	GO:0030488: tRNA methylation	2.91E-03
108	GO:0009854: oxidative photosynthetic carbon pathway	2.91E-03
109	GO:0071470: cellular response to osmotic stress	2.91E-03
110	GO:1900057: positive regulation of leaf senescence	3.43E-03
111	GO:0071446: cellular response to salicylic acid stimulus	3.43E-03
112	GO:0030026: cellular manganese ion homeostasis	3.43E-03
113	GO:0006605: protein targeting	3.98E-03
114	GO:0032508: DNA duplex unwinding	3.98E-03
115	GO:0031540: regulation of anthocyanin biosynthetic process	3.98E-03
116	GO:0005978: glycogen biosynthetic process	3.98E-03
117	GO:0030091: protein repair	3.98E-03
118	GO:0009813: flavonoid biosynthetic process	4.53E-03
119	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.56E-03
120	GO:0071482: cellular response to light stimulus	4.56E-03
121	GO:0090333: regulation of stomatal closure	5.16E-03
122	GO:0098656: anion transmembrane transport	5.16E-03
123	GO:0006099: tricarboxylic acid cycle	5.71E-03
124	GO:0005982: starch metabolic process	5.79E-03
125	GO:0009688: abscisic acid biosynthetic process	6.45E-03
126	GO:0048829: root cap development	6.45E-03
127	GO:0009698: phenylpropanoid metabolic process	7.13E-03
128	GO:0009073: aromatic amino acid family biosynthetic process	7.13E-03
129	GO:0045037: protein import into chloroplast stroma	7.84E-03
130	GO:0005983: starch catabolic process	7.84E-03
131	GO:0006979: response to oxidative stress	7.91E-03
132	GO:0010628: positive regulation of gene expression	8.57E-03
133	GO:0006006: glucose metabolic process	8.57E-03
134	GO:0009767: photosynthetic electron transport chain	8.57E-03
135	GO:0006302: double-strand break repair	9.33E-03
136	GO:0010224: response to UV-B	9.83E-03
137	GO:0080167: response to karrikin	9.96E-03
138	GO:0090351: seedling development	1.01E-02
139	GO:0046688: response to copper ion	1.01E-02
140	GO:0005985: sucrose metabolic process	1.01E-02
141	GO:0006833: water transport	1.09E-02
142	GO:0045454: cell redox homeostasis	1.25E-02
143	GO:0048511: rhythmic process	1.34E-02
144	GO:0019915: lipid storage	1.34E-02
145	GO:0051321: meiotic cell cycle	1.34E-02
146	GO:0071215: cellular response to abscisic acid stimulus	1.53E-02
147	GO:0005975: carbohydrate metabolic process	1.61E-02
148	GO:0009561: megagametogenesis	1.62E-02
149	GO:0046686: response to cadmium ion	1.68E-02
150	GO:0034220: ion transmembrane transport	1.81E-02
151	GO:0010182: sugar mediated signaling pathway	1.91E-02
152	GO:0009646: response to absence of light	2.01E-02
153	GO:0008654: phospholipid biosynthetic process	2.11E-02
154	GO:0071554: cell wall organization or biogenesis	2.22E-02
155	GO:0010090: trichome morphogenesis	2.43E-02
156	GO:0009567: double fertilization forming a zygote and endosperm	2.54E-02
157	GO:0048573: photoperiodism, flowering	3.24E-02
158	GO:0016311: dephosphorylation	3.36E-02
159	GO:0009658: chloroplast organization	3.63E-02
160	GO:0006811: ion transport	3.73E-02
161	GO:0009834: plant-type secondary cell wall biogenesis	3.73E-02
162	GO:0006499: N-terminal protein myristoylation	3.73E-02
163	GO:0007568: aging	3.86E-02
164	GO:0010119: regulation of stomatal movement	3.86E-02
165	GO:0016051: carbohydrate biosynthetic process	4.12E-02
166	GO:0009853: photorespiration	4.12E-02
167	GO:0009640: photomorphogenesis	4.93E-02
168	GO:0009926: auxin polar transport	4.93E-02
169	GO:0009744: response to sucrose	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
4	GO:0010486: manganese:proton antiporter activity	0.00E+00
5	GO:0046408: chlorophyll synthetase activity	0.00E+00
6	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
10	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
11	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
12	GO:0045550: geranylgeranyl reductase activity	0.00E+00
13	GO:0010242: oxygen evolving activity	0.00E+00
14	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
15	GO:0016166: phytoene dehydrogenase activity	0.00E+00
16	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
17	GO:0031409: pigment binding	8.99E-17
18	GO:0016168: chlorophyll binding	1.94E-13
19	GO:0008266: poly(U) RNA binding	7.33E-07
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.37E-06
21	GO:0046872: metal ion binding	7.12E-05
22	GO:0004462: lactoylglutathione lyase activity	8.46E-05
23	GO:0016615: malate dehydrogenase activity	8.46E-05
24	GO:0004332: fructose-bisphosphate aldolase activity	8.46E-05
25	GO:0030060: L-malate dehydrogenase activity	1.17E-04
26	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.17E-04
27	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.25E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.25E-04
29	GO:0008746: NAD(P)+ transhydrogenase activity	2.25E-04
30	GO:0016041: glutamate synthase (ferredoxin) activity	2.25E-04
31	GO:0045486: naringenin 3-dioxygenase activity	2.25E-04
32	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.25E-04
33	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.25E-04
34	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.25E-04
35	GO:0071949: FAD binding	2.95E-04
36	GO:0016491: oxidoreductase activity	3.28E-04
37	GO:0008047: enzyme activator activity	4.12E-04
38	GO:0004512: inositol-3-phosphate synthase activity	5.00E-04
39	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.00E-04
40	GO:0010291: carotene beta-ring hydroxylase activity	5.00E-04
41	GO:0047746: chlorophyllase activity	5.00E-04
42	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.00E-04
43	GO:0052832: inositol monophosphate 3-phosphatase activity	5.00E-04
44	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.00E-04
45	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.00E-04
46	GO:0008934: inositol monophosphate 1-phosphatase activity	5.00E-04
47	GO:0052833: inositol monophosphate 4-phosphatase activity	5.00E-04
48	GO:0004826: phenylalanine-tRNA ligase activity	5.00E-04
49	GO:0019172: glyoxalase III activity	5.00E-04
50	GO:0005315: inorganic phosphate transmembrane transporter activity	6.19E-04
51	GO:0031072: heat shock protein binding	6.19E-04
52	GO:0071917: triose-phosphate transmembrane transporter activity	8.13E-04
53	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.13E-04
54	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.13E-04
55	GO:0004324: ferredoxin-NADP+ reductase activity	8.13E-04
56	GO:0043169: cation binding	8.13E-04
57	GO:0003913: DNA photolyase activity	8.13E-04
58	GO:0004185: serine-type carboxypeptidase activity	9.59E-04
59	GO:0004792: thiosulfate sulfurtransferase activity	1.16E-03
60	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.16E-03
61	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.16E-03
62	GO:0016851: magnesium chelatase activity	1.16E-03
63	GO:0008508: bile acid:sodium symporter activity	1.16E-03
64	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.16E-03
65	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.16E-03
66	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.16E-03
67	GO:0008514: organic anion transmembrane transporter activity	1.48E-03
68	GO:0008891: glycolate oxidase activity	1.54E-03
69	GO:0015120: phosphoglycerate transmembrane transporter activity	1.54E-03
70	GO:0047134: protein-disulfide reductase activity	1.60E-03
71	GO:0051538: 3 iron, 4 sulfur cluster binding	1.97E-03
72	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.97E-03
73	GO:0003959: NADPH dehydrogenase activity	1.97E-03
74	GO:0004791: thioredoxin-disulfide reductase activity	2.00E-03
75	GO:0042578: phosphoric ester hydrolase activity	2.43E-03
76	GO:2001070: starch binding	2.43E-03
77	GO:0000293: ferric-chelate reductase activity	2.43E-03
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.61E-03
79	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.91E-03
80	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.91E-03
81	GO:0004017: adenylate kinase activity	2.91E-03
82	GO:0009881: photoreceptor activity	3.43E-03
83	GO:0008173: RNA methyltransferase activity	4.56E-03
84	GO:0008135: translation factor activity, RNA binding	4.56E-03
85	GO:0003746: translation elongation factor activity	5.46E-03
86	GO:0005384: manganese ion transmembrane transporter activity	5.79E-03
87	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.79E-03
88	GO:0000049: tRNA binding	7.84E-03
89	GO:0005198: structural molecule activity	7.91E-03
90	GO:0004089: carbonate dehydratase activity	8.57E-03
91	GO:0004565: beta-galactosidase activity	8.57E-03
92	GO:0016787: hydrolase activity	1.00E-02
93	GO:0003712: transcription cofactor activity	1.01E-02
94	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.16E-02
95	GO:0031418: L-ascorbic acid binding	1.17E-02
96	GO:0003954: NADH dehydrogenase activity	1.17E-02
97	GO:0004857: enzyme inhibitor activity	1.17E-02
98	GO:0008324: cation transmembrane transporter activity	1.26E-02
99	GO:0008408: 3'-5' exonuclease activity	1.34E-02
100	GO:0051082: unfolded protein binding	1.36E-02
101	GO:0015035: protein disulfide oxidoreductase activity	1.40E-02
102	GO:0003756: protein disulfide isomerase activity	1.62E-02
103	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.75E-02
104	GO:0010181: FMN binding	2.01E-02
105	GO:0005509: calcium ion binding	2.29E-02
106	GO:0016413: O-acetyltransferase activity	2.77E-02
107	GO:0015250: water channel activity	2.88E-02
108	GO:0042802: identical protein binding	2.99E-02
109	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.36E-02
110	GO:0030145: manganese ion binding	3.86E-02
111	GO:0003993: acid phosphatase activity	4.25E-02
112	GO:0050661: NADP binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009783: photosystem II antenna complex	0.00E+00
4	GO:0009534: chloroplast thylakoid	7.98E-46
5	GO:0009507: chloroplast	6.31E-45
6	GO:0009535: chloroplast thylakoid membrane	7.51E-37
7	GO:0009941: chloroplast envelope	5.05E-35
8	GO:0009579: thylakoid	5.28E-28
9	GO:0009570: chloroplast stroma	3.07E-26
10	GO:0010287: plastoglobule	1.32E-21
11	GO:0009522: photosystem I	1.03E-16
12	GO:0030076: light-harvesting complex	1.23E-12
13	GO:0031977: thylakoid lumen	1.83E-10
14	GO:0009543: chloroplast thylakoid lumen	3.87E-10
15	GO:0009517: PSII associated light-harvesting complex II	4.49E-10
16	GO:0048046: apoplast	3.36E-09
17	GO:0009523: photosystem II	5.78E-09
18	GO:0030095: chloroplast photosystem II	9.58E-09
19	GO:0009654: photosystem II oxygen evolving complex	2.00E-06
20	GO:0019898: extrinsic component of membrane	1.03E-05
21	GO:0009706: chloroplast inner membrane	3.48E-05
22	GO:0042651: thylakoid membrane	6.87E-05
23	GO:0009538: photosystem I reaction center	1.97E-04
24	GO:0009515: granal stacked thylakoid	2.25E-04
25	GO:0031361: integral component of thylakoid membrane	2.25E-04
26	GO:0000791: euchromatin	2.25E-04
27	GO:0031969: chloroplast membrane	4.16E-04
28	GO:0030870: Mre11 complex	5.00E-04
29	GO:0043036: starch grain	5.00E-04
30	GO:0031304: intrinsic component of mitochondrial inner membrane	5.00E-04
31	GO:0030093: chloroplast photosystem I	5.00E-04
32	GO:0016020: membrane	5.15E-04
33	GO:0032040: small-subunit processome	5.45E-04
34	GO:0009509: chromoplast	8.13E-04
35	GO:0010007: magnesium chelatase complex	8.13E-04
36	GO:0033281: TAT protein transport complex	8.13E-04
37	GO:0005960: glycine cleavage complex	1.16E-03
38	GO:0055035: plastid thylakoid membrane	1.97E-03
39	GO:0000795: synaptonemal complex	1.97E-03
40	GO:0005623: cell	2.98E-03
41	GO:0009533: chloroplast stromal thylakoid	3.43E-03
42	GO:0009501: amyloplast	3.98E-03
43	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.16E-03
44	GO:0008180: COP9 signalosome	5.16E-03
45	GO:0005770: late endosome	1.91E-02
46	GO:0005759: mitochondrial matrix	2.14E-02
47	GO:0000785: chromatin	2.32E-02
48	GO:0010319: stromule	2.65E-02
49	GO:0019005: SCF ubiquitin ligase complex	3.48E-02
50	GO:0005777: peroxisome	3.97E-02
51	GO:0031902: late endosome membrane	4.66E-02
52	GO:0016021: integral component of membrane	4.81E-02