Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G21580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
2GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
3GO:0007530: sex determination0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:1990258: histone glutamine methylation0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0090239: regulation of histone H4 acetylation0.00E+00
8GO:0000740: nuclear membrane fusion0.00E+00
9GO:0044843: cell cycle G1/S phase transition0.00E+00
10GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
11GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
12GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
13GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
14GO:0034050: host programmed cell death induced by symbiont0.00E+00
15GO:0046487: glyoxylate metabolic process0.00E+00
16GO:0006384: transcription initiation from RNA polymerase III promoter0.00E+00
17GO:0006412: translation2.71E-180
18GO:0042254: ribosome biogenesis5.21E-70
19GO:0000027: ribosomal large subunit assembly6.30E-15
20GO:0006626: protein targeting to mitochondrion7.01E-07
21GO:0000028: ribosomal small subunit assembly1.55E-06
22GO:0000387: spliceosomal snRNP assembly6.05E-06
23GO:0009735: response to cytokinin7.04E-06
24GO:0009967: positive regulation of signal transduction2.15E-05
25GO:0045041: protein import into mitochondrial intermembrane space2.15E-05
26GO:0006458: 'de novo' protein folding2.88E-05
27GO:0009955: adaxial/abaxial pattern specification2.88E-05
28GO:0000398: mRNA splicing, via spliceosome4.94E-05
29GO:0006414: translational elongation6.36E-05
30GO:1902626: assembly of large subunit precursor of preribosome6.96E-05
31GO:0002181: cytoplasmic translation6.96E-05
32GO:0006364: rRNA processing9.35E-05
33GO:0046686: response to cadmium ion1.20E-04
34GO:0042274: ribosomal small subunit biogenesis2.44E-04
35GO:0006820: anion transport2.90E-04
36GO:0031167: rRNA methylation3.66E-04
37GO:0030150: protein import into mitochondrial matrix6.29E-04
38GO:0042026: protein refolding6.75E-04
39GO:0000245: spliceosomal complex assembly6.75E-04
40GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.09E-04
41GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.09E-04
42GO:0032365: intracellular lipid transport7.09E-04
43GO:0006407: rRNA export from nucleus7.09E-04
44GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.09E-04
45GO:0031120: snRNA pseudouridine synthesis7.09E-04
46GO:0006475: internal protein amino acid acetylation7.09E-04
47GO:0031118: rRNA pseudouridine synthesis7.09E-04
48GO:0015801: aromatic amino acid transport7.09E-04
49GO:0017198: N-terminal peptidyl-serine acetylation7.09E-04
50GO:0030490: maturation of SSU-rRNA7.09E-04
51GO:2001006: regulation of cellulose biosynthetic process7.09E-04
52GO:0006434: seryl-tRNA aminoacylation7.09E-04
53GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.09E-04
54GO:0061077: chaperone-mediated protein folding8.06E-04
55GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.61E-04
56GO:0009651: response to salt stress9.11E-04
57GO:0001510: RNA methylation1.30E-03
58GO:0008033: tRNA processing1.37E-03
59GO:0010197: polar nucleus fusion1.51E-03
60GO:0015786: UDP-glucose transport1.53E-03
61GO:0045859: regulation of protein kinase activity1.53E-03
62GO:0045905: positive regulation of translational termination1.53E-03
63GO:0071668: plant-type cell wall assembly1.53E-03
64GO:2000072: regulation of defense response to fungus, incompatible interaction1.53E-03
65GO:0045901: positive regulation of translational elongation1.53E-03
66GO:0048569: post-embryonic animal organ development1.53E-03
67GO:0043981: histone H4-K5 acetylation1.53E-03
68GO:0006452: translational frameshifting1.53E-03
69GO:0010198: synergid death1.53E-03
70GO:0098656: anion transmembrane transport1.56E-03
71GO:0006413: translational initiation2.42E-03
72GO:0006954: inflammatory response2.53E-03
73GO:0009150: purine ribonucleotide metabolic process2.53E-03
74GO:0045793: positive regulation of cell size2.53E-03
75GO:0015783: GDP-fucose transport2.53E-03
76GO:0010476: gibberellin mediated signaling pathway2.53E-03
77GO:0042256: mature ribosome assembly2.53E-03
78GO:0009793: embryo development ending in seed dormancy3.12E-03
79GO:0006241: CTP biosynthetic process3.68E-03
80GO:0072334: UDP-galactose transmembrane transport3.68E-03
81GO:0006165: nucleoside diphosphate phosphorylation3.68E-03
82GO:0006228: UTP biosynthetic process3.68E-03
83GO:0006164: purine nucleotide biosynthetic process3.68E-03
84GO:0006168: adenine salvage3.68E-03
85GO:0009558: embryo sac cellularization3.68E-03
86GO:0046513: ceramide biosynthetic process3.68E-03
87GO:0032877: positive regulation of DNA endoreduplication3.68E-03
88GO:0007004: telomere maintenance via telomerase3.68E-03
89GO:0006166: purine ribonucleoside salvage3.68E-03
90GO:0070301: cellular response to hydrogen peroxide3.68E-03
91GO:0051085: chaperone mediated protein folding requiring cofactor3.68E-03
92GO:0010363: regulation of plant-type hypersensitive response4.97E-03
93GO:0051781: positive regulation of cell division4.97E-03
94GO:0006183: GTP biosynthetic process4.97E-03
95GO:0006289: nucleotide-excision repair5.15E-03
96GO:0071493: cellular response to UV-B6.39E-03
97GO:0019408: dolichol biosynthetic process6.39E-03
98GO:1902183: regulation of shoot apical meristem development6.39E-03
99GO:0044209: AMP salvage6.39E-03
100GO:0071215: cellular response to abscisic acid stimulus7.50E-03
101GO:0040007: growth7.50E-03
102GO:0045040: protein import into mitochondrial outer membrane7.94E-03
103GO:0000741: karyogamy7.94E-03
104GO:0016070: RNA metabolic process7.94E-03
105GO:0000470: maturation of LSU-rRNA7.94E-03
106GO:0008283: cell proliferation8.45E-03
107GO:0000911: cytokinesis by cell plate formation9.60E-03
108GO:0016444: somatic cell DNA recombination9.60E-03
109GO:0009648: photoperiodism9.60E-03
110GO:1901001: negative regulation of response to salt stress9.60E-03
111GO:0009965: leaf morphogenesis9.82E-03
112GO:0009645: response to low light intensity stimulus1.14E-02
113GO:0032880: regulation of protein localization1.14E-02
114GO:0010183: pollen tube guidance1.20E-02
115GO:0006635: fatty acid beta-oxidation1.28E-02
116GO:0080156: mitochondrial mRNA modification1.28E-02
117GO:0051603: proteolysis involved in cellular protein catabolic process1.29E-02
118GO:0001522: pseudouridine synthesis1.33E-02
119GO:0009690: cytokinin metabolic process1.33E-02
120GO:0050821: protein stabilization1.33E-02
121GO:0008380: RNA splicing1.39E-02
122GO:0001558: regulation of cell growth1.53E-02
123GO:0006526: arginine biosynthetic process1.53E-02
124GO:0044030: regulation of DNA methylation1.53E-02
125GO:0030968: endoplasmic reticulum unfolded protein response1.53E-02
126GO:0043562: cellular response to nitrogen levels1.53E-02
127GO:0009808: lignin metabolic process1.53E-02
128GO:0009245: lipid A biosynthetic process1.74E-02
129GO:0006098: pentose-phosphate shunt1.74E-02
130GO:0048507: meristem development1.74E-02
131GO:0006189: 'de novo' IMP biosynthetic process1.74E-02
132GO:0048589: developmental growth1.74E-02
133GO:0009060: aerobic respiration1.74E-02
134GO:0015780: nucleotide-sugar transport1.74E-02
135GO:0007338: single fertilization1.74E-02
136GO:0042761: very long-chain fatty acid biosynthetic process1.96E-02
137GO:0009409: response to cold2.17E-02
138GO:0010162: seed dormancy process2.19E-02
139GO:0006913: nucleocytoplasmic transport2.42E-02
140GO:0015770: sucrose transport2.42E-02
141GO:0010015: root morphogenesis2.42E-02
142GO:0006790: sulfur compound metabolic process2.67E-02
143GO:0012501: programmed cell death2.67E-02
144GO:0010043: response to zinc ion2.82E-02
145GO:0009845: seed germination2.85E-02
146GO:0010628: positive regulation of gene expression2.93E-02
147GO:0010102: lateral root morphogenesis2.93E-02
148GO:2000028: regulation of photoperiodism, flowering2.93E-02
149GO:0006094: gluconeogenesis2.93E-02
150GO:0006446: regulation of translational initiation3.19E-02
151GO:0048467: gynoecium development3.19E-02
152GO:0009944: polarity specification of adaxial/abaxial axis4.02E-02
153GO:0006487: protein N-linked glycosylation4.02E-02
154GO:0009116: nucleoside metabolic process4.02E-02
155GO:0009644: response to high light intensity4.30E-02
156GO:0051302: regulation of cell division4.32E-02
157GO:0006306: DNA methylation4.61E-02
158GO:0003333: amino acid transmembrane transport4.61E-02
159GO:0051260: protein homooligomerization4.61E-02
160GO:0010431: seed maturation4.61E-02
161GO:0006334: nucleosome assembly4.61E-02
162GO:0009617: response to bacterium4.79E-02
163GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.81E-02
164GO:0007005: mitochondrion organization4.92E-02
RankGO TermAdjusted P value
1GO:0034513: box H/ACA snoRNA binding0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0004055: argininosuccinate synthase activity0.00E+00
4GO:1990259: histone-glutamine methyltransferase activity0.00E+00
5GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
6GO:0003735: structural constituent of ribosome2.39E-225
7GO:0003729: mRNA binding7.51E-43
8GO:0019843: rRNA binding2.62E-18
9GO:0003723: RNA binding2.82E-08
10GO:0003746: translation elongation factor activity9.24E-08
11GO:0015288: porin activity1.55E-06
12GO:0044183: protein binding involved in protein folding1.21E-05
13GO:0005078: MAP-kinase scaffold activity2.15E-05
14GO:0030515: snoRNA binding4.43E-05
15GO:0008649: rRNA methyltransferase activity6.96E-05
16GO:0008308: voltage-gated anion channel activity8.90E-05
17GO:0008097: 5S rRNA binding1.45E-04
18GO:0001056: RNA polymerase III activity2.90E-04
19GO:1990189: peptide-serine-N-acetyltransferase activity7.09E-04
20GO:0004828: serine-tRNA ligase activity7.09E-04
21GO:0047326: inositol tetrakisphosphate 5-kinase activity7.09E-04
22GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.09E-04
23GO:0004679: AMP-activated protein kinase activity7.09E-04
24GO:1990190: peptide-glutamate-N-acetyltransferase activity7.09E-04
25GO:0005080: protein kinase C binding7.09E-04
26GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.09E-04
27GO:0035614: snRNA stem-loop binding7.09E-04
28GO:0000824: inositol tetrakisphosphate 3-kinase activity7.09E-04
29GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity7.96E-04
30GO:0004298: threonine-type endopeptidase activity8.06E-04
31GO:0008121: ubiquinol-cytochrome-c reductase activity8.61E-04
32GO:0051082: unfolded protein binding1.04E-03
33GO:0043022: ribosome binding1.07E-03
34GO:0032934: sterol binding1.53E-03
35GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.53E-03
36GO:0030619: U1 snRNA binding1.53E-03
37GO:0050291: sphingosine N-acyltransferase activity1.53E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.53E-03
39GO:0070034: telomerase RNA binding1.53E-03
40GO:0001055: RNA polymerase II activity1.85E-03
41GO:0001054: RNA polymerase I activity2.51E-03
42GO:0032947: protein complex scaffold2.53E-03
43GO:0070181: small ribosomal subunit rRNA binding2.53E-03
44GO:0005457: GDP-fucose transmembrane transporter activity2.53E-03
45GO:0015462: ATPase-coupled protein transmembrane transporter activity2.53E-03
46GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.67E-03
47GO:0015266: protein channel activity3.27E-03
48GO:0003999: adenine phosphoribosyltransferase activity3.68E-03
49GO:0005460: UDP-glucose transmembrane transporter activity3.68E-03
50GO:0004550: nucleoside diphosphate kinase activity3.68E-03
51GO:0047627: adenylylsulfatase activity3.68E-03
52GO:0070628: proteasome binding4.97E-03
53GO:0010011: auxin binding4.97E-03
54GO:0045547: dehydrodolichyl diphosphate synthase activity6.39E-03
55GO:0005275: amine transmembrane transporter activity6.39E-03
56GO:0005459: UDP-galactose transmembrane transporter activity6.39E-03
57GO:0031593: polyubiquitin binding7.94E-03
58GO:0031177: phosphopantetheine binding7.94E-03
59GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity7.94E-03
60GO:0004332: fructose-bisphosphate aldolase activity7.94E-03
61GO:0008233: peptidase activity8.41E-03
62GO:0000035: acyl binding9.60E-03
63GO:0019887: protein kinase regulator activity9.60E-03
64GO:0051920: peroxiredoxin activity9.60E-03
65GO:0005338: nucleotide-sugar transmembrane transporter activity1.14E-02
66GO:0008235: metalloexopeptidase activity1.14E-02
67GO:0042162: telomeric DNA binding1.14E-02
68GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.33E-02
69GO:0016209: antioxidant activity1.33E-02
70GO:0003743: translation initiation factor activity1.34E-02
71GO:0008515: sucrose transmembrane transporter activity2.42E-02
72GO:0008794: arsenate reductase (glutaredoxin) activity2.42E-02
73GO:0031072: heat shock protein binding2.93E-02
74GO:0051119: sugar transmembrane transporter activity3.46E-02
75GO:0051536: iron-sulfur cluster binding4.02E-02
76GO:0004407: histone deacetylase activity4.02E-02
77GO:0043130: ubiquitin binding4.02E-02
78GO:0005216: ion channel activity4.32E-02
79GO:0051087: chaperone binding4.32E-02
80GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.61E-02
81GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.64E-02
RankGO TermAdjusted P value
1GO:0072589: box H/ACA scaRNP complex0.00E+00
2GO:0005832: chaperonin-containing T-complex0.00E+00
3GO:0043186: P granule0.00E+00
4GO:0005675: holo TFIIH complex0.00E+00
5GO:0090661: box H/ACA telomerase RNP complex0.00E+00
6GO:0005840: ribosome1.72E-152
7GO:0022626: cytosolic ribosome2.73E-134
8GO:0022625: cytosolic large ribosomal subunit9.63E-131
9GO:0022627: cytosolic small ribosomal subunit5.08E-91
10GO:0005730: nucleolus1.61E-54
11GO:0005829: cytosol5.55E-49
12GO:0005737: cytoplasm3.46E-39
13GO:0009506: plasmodesma5.73E-26
14GO:0015934: large ribosomal subunit2.14E-25
15GO:0005774: vacuolar membrane3.37E-17
16GO:0015935: small ribosomal subunit2.17E-14
17GO:0016020: membrane2.43E-13
18GO:0005773: vacuole3.13E-12
19GO:0009507: chloroplast3.33E-09
20GO:0005618: cell wall1.17E-08
21GO:0005732: small nucleolar ribonucleoprotein complex3.02E-08
22GO:0005853: eukaryotic translation elongation factor 1 complex3.24E-07
23GO:0046930: pore complex2.58E-06
24GO:0015030: Cajal body6.05E-06
25GO:0019013: viral nucleocapsid2.19E-05
26GO:0005886: plasma membrane4.87E-05
27GO:0034719: SMN-Sm protein complex6.96E-05
28GO:0005742: mitochondrial outer membrane translocase complex8.90E-05
29GO:0005685: U1 snRNP1.19E-04
30GO:0005681: spliceosomal complex1.40E-04
31GO:0005666: DNA-directed RNA polymerase III complex1.54E-04
32GO:0071011: precatalytic spliceosome1.54E-04
33GO:0071013: catalytic step 2 spliceosome2.39E-04
34GO:0005682: U5 snRNP2.44E-04
35GO:0005665: DNA-directed RNA polymerase II, core complex2.90E-04
36GO:0005687: U4 snRNP3.66E-04
37GO:0097526: spliceosomal tri-snRNP complex3.66E-04
38GO:0031428: box C/D snoRNP complex5.10E-04
39GO:0000419: DNA-directed RNA polymerase V complex5.49E-04
40GO:0000502: proteasome complex5.55E-04
41GO:0005689: U12-type spliceosomal complex6.75E-04
42GO:0030686: 90S preribosome7.09E-04
43GO:0005741: mitochondrial outer membrane8.06E-04
44GO:0005839: proteasome core complex8.06E-04
45GO:0071010: prespliceosome1.53E-03
46GO:0035145: exon-exon junction complex1.53E-03
47GO:0031415: NatA complex1.53E-03
48GO:0005697: telomerase holoenzyme complex1.53E-03
49GO:0005736: DNA-directed RNA polymerase I complex1.56E-03
50GO:0005686: U2 snRNP2.17E-03
51GO:0000418: DNA-directed RNA polymerase IV complex2.17E-03
52GO:0005852: eukaryotic translation initiation factor 3 complex2.51E-03
53GO:0034715: pICln-Sm protein complex2.53E-03
54GO:0000439: core TFIIH complex2.53E-03
55GO:0032040: small-subunit processome2.88E-03
56GO:1990726: Lsm1-7-Pat1 complex3.68E-03
57GO:0031429: box H/ACA snoRNP complex3.68E-03
58GO:0005750: mitochondrial respiratory chain complex III3.70E-03
59GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.97E-03
60GO:0005758: mitochondrial intermembrane space5.15E-03
61GO:0009536: plastid7.17E-03
62GO:0000243: commitment complex7.94E-03
63GO:0005762: mitochondrial large ribosomal subunit9.60E-03
64GO:0016272: prefoldin complex9.60E-03
65GO:0031359: integral component of chloroplast outer membrane1.14E-02
66GO:0071004: U2-type prespliceosome1.33E-02
67GO:0005688: U6 snRNP1.33E-02
68GO:0046540: U4/U6 x U5 tri-snRNP complex1.53E-02
69GO:0005763: mitochondrial small ribosomal subunit1.74E-02
70GO:0030529: intracellular ribonucleoprotein complex1.86E-02
71GO:0016604: nuclear body1.96E-02
72GO:0005622: intracellular2.03E-02
73GO:0005740: mitochondrial envelope2.19E-02
74GO:0048471: perinuclear region of cytoplasm2.42E-02
75GO:0005654: nucleoplasm2.50E-02
76GO:0031307: integral component of mitochondrial outer membrane2.67E-02
77GO:0009508: plastid chromosome2.93E-02
78GO:0005759: mitochondrial matrix3.43E-02
79GO:0005753: mitochondrial proton-transporting ATP synthase complex3.46E-02
80GO:0070469: respiratory chain4.32E-02
81GO:0005743: mitochondrial inner membrane4.47E-02
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Gene type



Gene DE type