co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0019323: pentose catabolic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0015979: photosynthesis	3.61E-14
10	GO:0009735: response to cytokinin	3.21E-13
11	GO:0032544: plastid translation	2.41E-12
12	GO:0006412: translation	5.70E-12
13	GO:0042254: ribosome biogenesis	1.26E-09
14	GO:0009773: photosynthetic electron transport in photosystem I	4.15E-09
15	GO:0019464: glycine decarboxylation via glycine cleavage system	2.52E-07
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.80E-06
17	GO:0009409: response to cold	4.07E-06
18	GO:0005978: glycogen biosynthetic process	4.81E-06
19	GO:0006000: fructose metabolic process	1.02E-05
20	GO:0019252: starch biosynthetic process	1.34E-05
21	GO:0005983: starch catabolic process	2.81E-05
22	GO:0010027: thylakoid membrane organization	3.31E-05
23	GO:0010021: amylopectin biosynthetic process	4.19E-05
24	GO:0015995: chlorophyll biosynthetic process	4.57E-05
25	GO:0009658: chloroplast organization	5.14E-05
26	GO:0010196: nonphotochemical quenching	1.77E-04
27	GO:0080093: regulation of photorespiration	2.46E-04
28	GO:0031998: regulation of fatty acid beta-oxidation	2.46E-04
29	GO:0000023: maltose metabolic process	2.46E-04
30	GO:0000025: maltose catabolic process	2.46E-04
31	GO:0043489: RNA stabilization	2.46E-04
32	GO:0044262: cellular carbohydrate metabolic process	2.46E-04
33	GO:0006002: fructose 6-phosphate metabolic process	2.78E-04
34	GO:0010206: photosystem II repair	3.36E-04
35	GO:0005982: starch metabolic process	3.99E-04
36	GO:0031648: protein destabilization	5.44E-04
37	GO:0010270: photosystem II oxygen evolving complex assembly	5.44E-04
38	GO:0019388: galactose catabolic process	5.44E-04
39	GO:0005976: polysaccharide metabolic process	5.44E-04
40	GO:0018026: peptidyl-lysine monomethylation	5.44E-04
41	GO:0009817: defense response to fungus, incompatible interaction	6.09E-04
42	GO:0006094: gluconeogenesis	7.00E-04
43	GO:0005986: sucrose biosynthetic process	7.00E-04
44	GO:0042742: defense response to bacterium	8.44E-04
45	GO:0016050: vesicle organization	8.83E-04
46	GO:0048281: inflorescence morphogenesis	8.83E-04
47	GO:0006518: peptide metabolic process	8.83E-04
48	GO:0006289: nucleotide-excision repair	1.08E-03
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.26E-03
50	GO:0006241: CTP biosynthetic process	1.26E-03
51	GO:0006165: nucleoside diphosphate phosphorylation	1.26E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.26E-03
53	GO:0006228: UTP biosynthetic process	1.26E-03
54	GO:0010148: transpiration	1.26E-03
55	GO:0010731: protein glutathionylation	1.26E-03
56	GO:0006424: glutamyl-tRNA aminoacylation	1.26E-03
57	GO:0009590: detection of gravity	1.26E-03
58	GO:0010037: response to carbon dioxide	1.68E-03
59	GO:0006808: regulation of nitrogen utilization	1.68E-03
60	GO:0015976: carbon utilization	1.68E-03
61	GO:0009765: photosynthesis, light harvesting	1.68E-03
62	GO:0006109: regulation of carbohydrate metabolic process	1.68E-03
63	GO:0006183: GTP biosynthetic process	1.68E-03
64	GO:0045727: positive regulation of translation	1.68E-03
65	GO:2000122: negative regulation of stomatal complex development	1.68E-03
66	GO:0006546: glycine catabolic process	1.68E-03
67	GO:0006097: glyoxylate cycle	2.15E-03
68	GO:0006461: protein complex assembly	2.15E-03
69	GO:0006544: glycine metabolic process	2.15E-03
70	GO:0032543: mitochondrial translation	2.15E-03
71	GO:0006563: L-serine metabolic process	2.65E-03
72	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.65E-03
73	GO:0042549: photosystem II stabilization	2.65E-03
74	GO:0000470: maturation of LSU-rRNA	2.65E-03
75	GO:0006828: manganese ion transport	2.65E-03
76	GO:0010190: cytochrome b6f complex assembly	2.65E-03
77	GO:0009955: adaxial/abaxial pattern specification	3.18E-03
78	GO:1901259: chloroplast rRNA processing	3.18E-03
79	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.18E-03
80	GO:0010103: stomatal complex morphogenesis	3.75E-03
81	GO:0070370: cellular heat acclimation	3.75E-03
82	GO:0009645: response to low light intensity stimulus	3.75E-03
83	GO:0015996: chlorophyll catabolic process	4.98E-03
84	GO:0001558: regulation of cell growth	4.98E-03
85	GO:0009657: plastid organization	4.98E-03
86	GO:0007623: circadian rhythm	5.12E-03
87	GO:0051865: protein autoubiquitination	5.65E-03
88	GO:0006783: heme biosynthetic process	5.65E-03
89	GO:0006810: transport	6.20E-03
90	GO:0009853: photorespiration	6.21E-03
91	GO:0035999: tetrahydrofolate interconversion	6.33E-03
92	GO:0042761: very long-chain fatty acid biosynthetic process	6.33E-03
93	GO:0034599: cellular response to oxidative stress	6.50E-03
94	GO:0006782: protoporphyrinogen IX biosynthetic process	7.06E-03
95	GO:0006816: calcium ion transport	7.80E-03
96	GO:0006415: translational termination	7.80E-03
97	GO:0043085: positive regulation of catalytic activity	7.80E-03
98	GO:0009750: response to fructose	7.80E-03
99	GO:0016485: protein processing	7.80E-03
100	GO:0009767: photosynthetic electron transport chain	9.38E-03
101	GO:0010102: lateral root morphogenesis	9.38E-03
102	GO:0006108: malate metabolic process	9.38E-03
103	GO:0006006: glucose metabolic process	9.38E-03
104	GO:0006979: response to oxidative stress	9.92E-03
105	GO:0010020: chloroplast fission	1.02E-02
106	GO:0010207: photosystem II assembly	1.02E-02
107	GO:0019253: reductive pentose-phosphate cycle	1.02E-02
108	GO:0005985: sucrose metabolic process	1.11E-02
109	GO:0010025: wax biosynthetic process	1.20E-02
110	GO:0000027: ribosomal large subunit assembly	1.29E-02
111	GO:0009944: polarity specification of adaxial/abaxial axis	1.29E-02
112	GO:0051302: regulation of cell division	1.38E-02
113	GO:0006418: tRNA aminoacylation for protein translation	1.38E-02
114	GO:0007017: microtubule-based process	1.38E-02
115	GO:0009768: photosynthesis, light harvesting in photosystem I	1.38E-02
116	GO:0055114: oxidation-reduction process	1.40E-02
117	GO:0061077: chaperone-mediated protein folding	1.47E-02
118	GO:0016226: iron-sulfur cluster assembly	1.57E-02
119	GO:0035428: hexose transmembrane transport	1.57E-02
120	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.57E-02
121	GO:0001944: vasculature development	1.67E-02
122	GO:0009411: response to UV	1.67E-02
123	GO:0006284: base-excision repair	1.77E-02
124	GO:0000413: protein peptidyl-prolyl isomerization	1.99E-02
125	GO:0046323: glucose import	2.09E-02
126	GO:0006662: glycerol ether metabolic process	2.09E-02
127	GO:0046686: response to cadmium ion	2.10E-02
128	GO:0008152: metabolic process	2.18E-02
129	GO:0015986: ATP synthesis coupled proton transport	2.21E-02
130	GO:0009790: embryo development	2.26E-02
131	GO:0000302: response to reactive oxygen species	2.43E-02
132	GO:0006508: proteolysis	2.56E-02
133	GO:0030163: protein catabolic process	2.67E-02
134	GO:0016311: dephosphorylation	3.69E-02
135	GO:0048481: plant ovule development	3.82E-02
136	GO:0018298: protein-chromophore linkage	3.82E-02
137	GO:0009813: flavonoid biosynthetic process	3.96E-02
138	GO:0010218: response to far red light	4.10E-02
139	GO:0009631: cold acclimation	4.24E-02
140	GO:0010119: regulation of stomatal movement	4.24E-02
141	GO:0009637: response to blue light	4.52E-02
142	GO:0045087: innate immune response	4.52E-02
143	GO:0006099: tricarboxylic acid cycle	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0019843: rRNA binding	2.98E-19
8	GO:0003735: structural constituent of ribosome	6.30E-15
9	GO:0008266: poly(U) RNA binding	9.77E-07
10	GO:0005528: FK506 binding	2.11E-06
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.80E-06
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.44E-05
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.31E-05
14	GO:0016851: magnesium chelatase activity	2.31E-05
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.46E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.46E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.46E-04
18	GO:0009496: plastoquinol--plastocyanin reductase activity	2.46E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	2.46E-04
20	GO:0004134: 4-alpha-glucanotransferase activity	2.46E-04
21	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.46E-04
22	GO:0019203: carbohydrate phosphatase activity	2.46E-04
23	GO:0034256: chlorophyll(ide) b reductase activity	2.46E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.46E-04
25	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.46E-04
26	GO:0016491: oxidoreductase activity	4.57E-04
27	GO:0010297: heteropolysaccharide binding	5.44E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	5.44E-04
29	GO:0004750: ribulose-phosphate 3-epimerase activity	5.44E-04
30	GO:0018708: thiol S-methyltransferase activity	5.44E-04
31	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.44E-04
32	GO:0008967: phosphoglycolate phosphatase activity	5.44E-04
33	GO:0004614: phosphoglucomutase activity	5.44E-04
34	GO:0004222: metalloendopeptidase activity	6.90E-04
35	GO:0004324: ferredoxin-NADP+ reductase activity	8.83E-04
36	GO:0043169: cation binding	8.83E-04
37	GO:0004373: glycogen (starch) synthase activity	8.83E-04
38	GO:0017150: tRNA dihydrouridine synthase activity	8.83E-04
39	GO:0002161: aminoacyl-tRNA editing activity	8.83E-04
40	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	8.83E-04
41	GO:0004148: dihydrolipoyl dehydrogenase activity	8.83E-04
42	GO:0005504: fatty acid binding	8.83E-04
43	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.83E-04
44	GO:0030267: glyoxylate reductase (NADP) activity	8.83E-04
45	GO:0043023: ribosomal large subunit binding	1.26E-03
46	GO:0016149: translation release factor activity, codon specific	1.26E-03
47	GO:0004550: nucleoside diphosphate kinase activity	1.26E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	1.68E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.68E-03
50	GO:0019104: DNA N-glycosylase activity	1.68E-03
51	GO:0019199: transmembrane receptor protein kinase activity	1.68E-03
52	GO:0045430: chalcone isomerase activity	1.68E-03
53	GO:0009011: starch synthase activity	1.68E-03
54	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.68E-03
55	GO:0042277: peptide binding	1.68E-03
56	GO:0004372: glycine hydroxymethyltransferase activity	2.15E-03
57	GO:0003959: NADPH dehydrogenase activity	2.15E-03
58	GO:0050662: coenzyme binding	2.27E-03
59	GO:0048038: quinone binding	2.61E-03
60	GO:0016615: malate dehydrogenase activity	2.65E-03
61	GO:2001070: starch binding	2.65E-03
62	GO:0004130: cytochrome-c peroxidase activity	2.65E-03
63	GO:0051920: peroxiredoxin activity	3.18E-03
64	GO:0030060: L-malate dehydrogenase activity	3.18E-03
65	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.18E-03
66	GO:0004602: glutathione peroxidase activity	3.18E-03
67	GO:0004252: serine-type endopeptidase activity	3.88E-03
68	GO:0016168: chlorophyll binding	3.98E-03
69	GO:0016209: antioxidant activity	4.35E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	4.35E-03
71	GO:0008236: serine-type peptidase activity	4.66E-03
72	GO:0015078: hydrogen ion transmembrane transporter activity	4.98E-03
73	GO:0003747: translation release factor activity	5.65E-03
74	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.65E-03
75	GO:0005384: manganese ion transmembrane transporter activity	6.33E-03
76	GO:0008047: enzyme activator activity	7.06E-03
77	GO:0044183: protein binding involved in protein folding	7.80E-03
78	GO:0047372: acylglycerol lipase activity	7.80E-03
79	GO:0015386: potassium:proton antiporter activity	7.80E-03
80	GO:0000049: tRNA binding	8.58E-03
81	GO:0051537: 2 iron, 2 sulfur cluster binding	8.67E-03
82	GO:0004089: carbonate dehydratase activity	9.38E-03
83	GO:0015095: magnesium ion transmembrane transporter activity	9.38E-03
84	GO:0031072: heat shock protein binding	9.38E-03
85	GO:0004022: alcohol dehydrogenase (NAD) activity	9.38E-03
86	GO:0031409: pigment binding	1.20E-02
87	GO:0051536: iron-sulfur cluster binding	1.29E-02
88	GO:0004857: enzyme inhibitor activity	1.29E-02
89	GO:0016787: hydrolase activity	1.29E-02
90	GO:0015079: potassium ion transmembrane transporter activity	1.38E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	1.67E-02
92	GO:0047134: protein-disulfide reductase activity	1.88E-02
93	GO:0004812: aminoacyl-tRNA ligase activity	1.88E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-02
95	GO:0005355: glucose transmembrane transporter activity	2.21E-02
96	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.67E-02
97	GO:0003684: damaged DNA binding	2.79E-02
98	GO:0008237: metallopeptidase activity	2.91E-02
99	GO:0005200: structural constituent of cytoskeleton	2.91E-02
100	GO:0030247: polysaccharide binding	3.55E-02
101	GO:0008168: methyltransferase activity	3.98E-02
102	GO:0004601: peroxidase activity	4.13E-02
103	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	1.19E-92
5	GO:0009570: chloroplast stroma	1.07E-65
6	GO:0009941: chloroplast envelope	8.79E-61
7	GO:0009534: chloroplast thylakoid	1.00E-44
8	GO:0009535: chloroplast thylakoid membrane	1.90E-44
9	GO:0009579: thylakoid	8.51E-40
10	GO:0009543: chloroplast thylakoid lumen	1.38E-17
11	GO:0005840: ribosome	3.43E-15
12	GO:0031977: thylakoid lumen	7.52E-12
13	GO:0010287: plastoglobule	1.87E-11
14	GO:0010319: stromule	2.57E-08
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.17E-07
16	GO:0009533: chloroplast stromal thylakoid	3.16E-06
17	GO:0010007: magnesium chelatase complex	1.02E-05
18	GO:0016020: membrane	1.23E-05
19	GO:0005960: glycine cleavage complex	2.31E-05
20	GO:0009295: nucleoid	2.62E-05
21	GO:0009508: plastid chromosome	3.48E-05
22	GO:0030095: chloroplast photosystem II	4.25E-05
23	GO:0009706: chloroplast inner membrane	4.67E-05
24	GO:0048046: apoplast	5.94E-05
25	GO:0009501: amyloplast	2.25E-04
26	GO:0009538: photosystem I reaction center	2.25E-04
27	GO:0009523: photosystem II	2.42E-04
28	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.46E-04
29	GO:0031969: chloroplast membrane	5.26E-04
30	GO:0030093: chloroplast photosystem I	5.44E-04
31	GO:0000311: plastid large ribosomal subunit	6.18E-04
32	GO:0015934: large ribosomal subunit	7.31E-04
33	GO:0009654: photosystem II oxygen evolving complex	1.19E-03
34	GO:0009517: PSII associated light-harvesting complex II	1.68E-03
35	GO:0009512: cytochrome b6f complex	2.15E-03
36	GO:0019898: extrinsic component of membrane	2.44E-03
37	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.65E-03
38	GO:0009840: chloroplastic endopeptidase Clp complex	3.18E-03
39	GO:0005763: mitochondrial small ribosomal subunit	5.65E-03
40	GO:0042644: chloroplast nucleoid	5.65E-03
41	GO:0045298: tubulin complex	5.65E-03
42	GO:0000312: plastid small ribosomal subunit	1.02E-02
43	GO:0030076: light-harvesting complex	1.11E-02
44	GO:0022625: cytosolic large ribosomal subunit	1.25E-02
45	GO:0042651: thylakoid membrane	1.38E-02
46	GO:0009536: plastid	1.39E-02
47	GO:0015935: small ribosomal subunit	1.47E-02
48	GO:0009532: plastid stroma	1.47E-02
49	GO:0009522: photosystem I	2.21E-02
50	GO:0005759: mitochondrial matrix	2.43E-02
51	GO:0030529: intracellular ribonucleoprotein complex	3.16E-02
52	GO:0022626: cytosolic ribosome	3.72E-02