Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G21330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015882: L-ascorbic acid transport0.00E+00
2GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
6GO:2000505: regulation of energy homeostasis0.00E+00
7GO:0017038: protein import0.00E+00
8GO:0009715: chalcone biosynthetic process0.00E+00
9GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
10GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0016118: carotenoid catabolic process0.00E+00
13GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
14GO:0015979: photosynthesis4.23E-21
15GO:0009768: photosynthesis, light harvesting in photosystem I1.40E-16
16GO:0018298: protein-chromophore linkage3.93E-15
17GO:0010196: nonphotochemical quenching5.27E-11
18GO:0010207: photosystem II assembly5.79E-11
19GO:0010114: response to red light5.46E-09
20GO:0009644: response to high light intensity7.33E-09
21GO:0006000: fructose metabolic process1.06E-08
22GO:0009645: response to low light intensity stimulus1.25E-08
23GO:0009769: photosynthesis, light harvesting in photosystem II1.25E-08
24GO:0010218: response to far red light5.13E-08
25GO:0009773: photosynthetic electron transport in photosystem I2.03E-07
26GO:0019253: reductive pentose-phosphate cycle5.20E-07
27GO:0042549: photosystem II stabilization6.72E-07
28GO:0015995: chlorophyll biosynthetic process1.00E-06
29GO:0009416: response to light stimulus1.03E-06
30GO:0030388: fructose 1,6-bisphosphate metabolic process1.93E-06
31GO:0035304: regulation of protein dephosphorylation1.93E-06
32GO:0009637: response to blue light2.50E-06
33GO:0009642: response to light intensity2.94E-06
34GO:0006002: fructose 6-phosphate metabolic process4.29E-06
35GO:0010206: photosystem II repair6.03E-06
36GO:0090391: granum assembly7.09E-06
37GO:0019684: photosynthesis, light reaction1.40E-05
38GO:0010027: thylakoid membrane organization1.89E-05
39GO:0006094: gluconeogenesis2.22E-05
40GO:0055114: oxidation-reduction process2.68E-05
41GO:0006021: inositol biosynthetic process3.00E-05
42GO:0016123: xanthophyll biosynthetic process4.82E-05
43GO:0009269: response to desiccation6.32E-05
44GO:0010189: vitamin E biosynthetic process9.88E-05
45GO:0042742: defense response to bacterium9.94E-05
46GO:0000481: maturation of 5S rRNA2.02E-04
47GO:0051775: response to redox state2.02E-04
48GO:0071277: cellular response to calcium ion2.02E-04
49GO:0065002: intracellular protein transmembrane transport2.02E-04
50GO:0043686: co-translational protein modification2.02E-04
51GO:0080093: regulation of photorespiration2.02E-04
52GO:0043609: regulation of carbon utilization2.02E-04
53GO:0031998: regulation of fatty acid beta-oxidation2.02E-04
54GO:0010028: xanthophyll cycle2.02E-04
55GO:0034337: RNA folding2.02E-04
56GO:0043953: protein transport by the Tat complex2.02E-04
57GO:0009658: chloroplast organization2.07E-04
58GO:0009409: response to cold2.34E-04
59GO:0090333: regulation of stomatal closure2.53E-04
60GO:0010205: photoinhibition3.01E-04
61GO:0009735: response to cytokinin3.37E-04
62GO:0043085: positive regulation of catalytic activity4.10E-04
63GO:0097054: L-glutamate biosynthetic process4.52E-04
64GO:0006729: tetrahydrobiopterin biosynthetic process4.52E-04
65GO:0016121: carotene catabolic process4.52E-04
66GO:0009629: response to gravity4.52E-04
67GO:0016124: xanthophyll catabolic process4.52E-04
68GO:0006432: phenylalanyl-tRNA aminoacylation4.52E-04
69GO:0005983: starch catabolic process4.70E-04
70GO:0006108: malate metabolic process5.33E-04
71GO:0006006: glucose metabolic process5.33E-04
72GO:0005986: sucrose biosynthetic process5.33E-04
73GO:0034599: cellular response to oxidative stress6.10E-04
74GO:0090351: seedling development6.71E-04
75GO:0071492: cellular response to UV-A7.36E-04
76GO:1902448: positive regulation of shade avoidance7.36E-04
77GO:0042823: pyridoxal phosphate biosynthetic process1.05E-03
78GO:0006020: inositol metabolic process1.05E-03
79GO:0071484: cellular response to light intensity1.05E-03
80GO:0006107: oxaloacetate metabolic process1.05E-03
81GO:0006537: glutamate biosynthetic process1.05E-03
82GO:0042989: sequestering of actin monomers1.05E-03
83GO:0016117: carotenoid biosynthetic process1.38E-03
84GO:0010109: regulation of photosynthesis1.40E-03
85GO:0019676: ammonia assimilation cycle1.40E-03
86GO:0015976: carbon utilization1.40E-03
87GO:0071486: cellular response to high light intensity1.40E-03
88GO:0019464: glycine decarboxylation via glycine cleavage system1.40E-03
89GO:0009765: photosynthesis, light harvesting1.40E-03
90GO:0006109: regulation of carbohydrate metabolic process1.40E-03
91GO:0045727: positive regulation of translation1.40E-03
92GO:0030104: water homeostasis1.40E-03
93GO:0015994: chlorophyll metabolic process1.40E-03
94GO:0006546: glycine catabolic process1.40E-03
95GO:0006734: NADH metabolic process1.40E-03
96GO:0006096: glycolytic process1.41E-03
97GO:0006662: glycerol ether metabolic process1.61E-03
98GO:0006814: sodium ion transport1.72E-03
99GO:0010236: plastoquinone biosynthetic process1.78E-03
100GO:0031365: N-terminal protein amino acid modification1.78E-03
101GO:0006097: glyoxylate cycle1.78E-03
102GO:0030041: actin filament polymerization1.78E-03
103GO:0016120: carotene biosynthetic process1.78E-03
104GO:0019252: starch biosynthetic process1.85E-03
105GO:0009635: response to herbicide2.19E-03
106GO:0046855: inositol phosphate dephosphorylation2.19E-03
107GO:0050665: hydrogen peroxide biosynthetic process2.19E-03
108GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.19E-03
109GO:0009854: oxidative photosynthetic carbon pathway2.63E-03
110GO:0071470: cellular response to osmotic stress2.63E-03
111GO:0051510: regulation of unidimensional cell growth3.09E-03
112GO:0009772: photosynthetic electron transport in photosystem II3.09E-03
113GO:1900057: positive regulation of leaf senescence3.09E-03
114GO:0031540: regulation of anthocyanin biosynthetic process3.59E-03
115GO:0006605: protein targeting3.59E-03
116GO:0009704: de-etiolation3.59E-03
117GO:0032508: DNA duplex unwinding3.59E-03
118GO:0005975: carbohydrate metabolic process3.78E-03
119GO:0009813: flavonoid biosynthetic process3.89E-03
120GO:0032544: plastid translation4.10E-03
121GO:0071482: cellular response to light stimulus4.10E-03
122GO:0006754: ATP biosynthetic process4.65E-03
123GO:0098656: anion transmembrane transport4.65E-03
124GO:0009821: alkaloid biosynthetic process4.65E-03
125GO:0009245: lipid A biosynthetic process4.65E-03
126GO:0006098: pentose-phosphate shunt4.65E-03
127GO:0009853: photorespiration4.69E-03
128GO:0006099: tricarboxylic acid cycle4.90E-03
129GO:0009688: abscisic acid biosynthetic process5.80E-03
130GO:0009641: shade avoidance5.80E-03
131GO:0009744: response to sucrose6.04E-03
132GO:0000272: polysaccharide catabolic process6.41E-03
133GO:0018119: peptidyl-cysteine S-nitrosylation6.41E-03
134GO:0009073: aromatic amino acid family biosynthetic process6.41E-03
135GO:0006790: sulfur compound metabolic process7.04E-03
136GO:0009767: photosynthetic electron transport chain7.70E-03
137GO:0080167: response to karrikin8.18E-03
138GO:0010223: secondary shoot formation8.37E-03
139GO:0010224: response to UV-B8.43E-03
140GO:0046854: phosphatidylinositol phosphorylation9.07E-03
141GO:0005985: sucrose metabolic process9.07E-03
142GO:0045454: cell redox homeostasis1.03E-02
143GO:0007010: cytoskeleton organization1.05E-02
144GO:0061077: chaperone-mediated protein folding1.21E-02
145GO:0019748: secondary metabolic process1.29E-02
146GO:0046686: response to cadmium ion1.29E-02
147GO:0009408: response to heat1.34E-02
148GO:0071215: cellular response to abscisic acid stimulus1.37E-02
149GO:0009561: megagametogenesis1.45E-02
150GO:0009845: seed germination1.58E-02
151GO:0042631: cellular response to water deprivation1.62E-02
152GO:0042335: cuticle development1.62E-02
153GO:0010182: sugar mediated signaling pathway1.71E-02
154GO:0015986: ATP synthesis coupled proton transport1.80E-02
155GO:0009646: response to absence of light1.80E-02
156GO:0008654: phospholipid biosynthetic process1.89E-02
157GO:0009791: post-embryonic development1.89E-02
158GO:0071554: cell wall organization or biogenesis1.99E-02
159GO:0007623: circadian rhythm2.01E-02
160GO:0010090: trichome morphogenesis2.18E-02
161GO:0009567: double fertilization forming a zygote and endosperm2.28E-02
162GO:0051607: defense response to virus2.48E-02
163GO:0009793: embryo development ending in seed dormancy2.52E-02
164GO:0009627: systemic acquired resistance2.80E-02
165GO:0009611: response to wounding2.84E-02
166GO:0048573: photoperiodism, flowering2.90E-02
167GO:0016311: dephosphorylation3.01E-02
168GO:0045893: positive regulation of transcription, DNA-templated3.29E-02
169GO:0006499: N-terminal protein myristoylation3.35E-02
170GO:0006811: ion transport3.35E-02
171GO:0007568: aging3.46E-02
172GO:0048527: lateral root development3.46E-02
173GO:0010119: regulation of stomatal movement3.46E-02
174GO:0016051: carbohydrate biosynthetic process3.69E-02
175GO:0042542: response to hydrogen peroxide4.30E-02
176GO:0009640: photomorphogenesis4.42E-02
177GO:0009926: auxin polar transport4.42E-02
RankGO TermAdjusted P value
1GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
4GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
9GO:0016210: naringenin-chalcone synthase activity0.00E+00
10GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
11GO:0045550: geranylgeranyl reductase activity0.00E+00
12GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
13GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
14GO:0010242: oxygen evolving activity0.00E+00
15GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
16GO:0016166: phytoene dehydrogenase activity0.00E+00
17GO:0015229: L-ascorbic acid transporter activity0.00E+00
18GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
19GO:0004760: serine-pyruvate transaminase activity0.00E+00
20GO:0031409: pigment binding4.37E-17
21GO:0016168: chlorophyll binding1.21E-15
22GO:0008266: poly(U) RNA binding5.20E-07
23GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.93E-06
24GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.93E-06
25GO:0031072: heat shock protein binding2.22E-05
26GO:0046872: metal ion binding2.60E-05
27GO:0016615: malate dehydrogenase activity7.11E-05
28GO:2001070: starch binding7.11E-05
29GO:0030060: L-malate dehydrogenase activity9.88E-05
30GO:0042586: peptide deformylase activity2.02E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.02E-04
32GO:0008746: NAD(P)+ transhydrogenase activity2.02E-04
33GO:0016041: glutamate synthase (ferredoxin) activity2.02E-04
34GO:0045486: naringenin 3-dioxygenase activity2.02E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.02E-04
36GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.02E-04
37GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.02E-04
38GO:0050308: sugar-phosphatase activity2.02E-04
39GO:0019203: carbohydrate phosphatase activity2.02E-04
40GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.02E-04
41GO:0071949: FAD binding2.53E-04
42GO:0008047: enzyme activator activity3.54E-04
43GO:0010291: carotene beta-ring hydroxylase activity4.52E-04
44GO:0047746: chlorophyllase activity4.52E-04
45GO:0010297: heteropolysaccharide binding4.52E-04
46GO:0009977: proton motive force dependent protein transmembrane transporter activity4.52E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity4.52E-04
48GO:0008934: inositol monophosphate 1-phosphatase activity4.52E-04
49GO:0052833: inositol monophosphate 4-phosphatase activity4.52E-04
50GO:0004826: phenylalanine-tRNA ligase activity4.52E-04
51GO:0004512: inositol-3-phosphate synthase activity4.52E-04
52GO:0005315: inorganic phosphate transmembrane transporter activity5.33E-04
53GO:0003746: translation elongation factor activity5.77E-04
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.36E-04
55GO:0015462: ATPase-coupled protein transmembrane transporter activity7.36E-04
56GO:0004324: ferredoxin-NADP+ reductase activity7.36E-04
57GO:0004373: glycogen (starch) synthase activity7.36E-04
58GO:0003913: DNA photolyase activity7.36E-04
59GO:0016491: oxidoreductase activity8.24E-04
60GO:0005198: structural molecule activity9.17E-04
61GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.05E-03
62GO:0016851: magnesium chelatase activity1.05E-03
63GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.05E-03
64GO:0008508: bile acid:sodium symporter activity1.05E-03
65GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.05E-03
66GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.05E-03
67GO:0004375: glycine dehydrogenase (decarboxylating) activity1.05E-03
68GO:0004792: thiosulfate sulfurtransferase activity1.05E-03
69GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.05E-03
70GO:0008514: organic anion transmembrane transporter activity1.28E-03
71GO:0047134: protein-disulfide reductase activity1.38E-03
72GO:0008891: glycolate oxidase activity1.40E-03
73GO:0008453: alanine-glyoxylate transaminase activity1.40E-03
74GO:0009011: starch synthase activity1.40E-03
75GO:0004791: thioredoxin-disulfide reductase activity1.72E-03
76GO:0003785: actin monomer binding1.78E-03
77GO:0051538: 3 iron, 4 sulfur cluster binding1.78E-03
78GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.78E-03
79GO:0003959: NADPH dehydrogenase activity1.78E-03
80GO:0051082: unfolded protein binding1.79E-03
81GO:0042578: phosphoric ester hydrolase activity2.19E-03
82GO:0004332: fructose-bisphosphate aldolase activity2.19E-03
83GO:0031177: phosphopantetheine binding2.19E-03
84GO:0000293: ferric-chelate reductase activity2.19E-03
85GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.25E-03
86GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.63E-03
87GO:0004017: adenylate kinase activity2.63E-03
88GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.63E-03
89GO:0000035: acyl binding2.63E-03
90GO:0009881: photoreceptor activity3.09E-03
91GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process3.59E-03
92GO:0008135: translation factor activity, RNA binding4.10E-03
93GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.65E-03
94GO:0005509: calcium ion binding5.18E-03
95GO:0016844: strictosidine synthase activity5.21E-03
96GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.21E-03
97GO:0050661: NADP binding5.34E-03
98GO:0030234: enzyme regulator activity5.80E-03
99GO:0000049: tRNA binding7.04E-03
100GO:0051287: NAD binding7.31E-03
101GO:0004089: carbonate dehydratase activity7.70E-03
102GO:0004565: beta-galactosidase activity7.70E-03
103GO:0003712: transcription cofactor activity9.07E-03
104GO:0031418: L-ascorbic acid binding1.05E-02
105GO:0003954: NADH dehydrogenase activity1.05E-02
106GO:0004857: enzyme inhibitor activity1.05E-02
107GO:0005528: FK506 binding1.05E-02
108GO:0015035: protein disulfide oxidoreductase activity1.20E-02
109GO:0022891: substrate-specific transmembrane transporter activity1.37E-02
110GO:0003756: protein disulfide isomerase activity1.45E-02
111GO:0019843: rRNA binding1.46E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.50E-02
113GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.71E-02
114GO:0050662: coenzyme binding1.80E-02
115GO:0010181: FMN binding1.80E-02
116GO:0005515: protein binding2.07E-02
117GO:0016413: O-acetyltransferase activity2.48E-02
118GO:0042802: identical protein binding2.56E-02
119GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.01E-02
120GO:0003993: acid phosphatase activity3.81E-02
121GO:0004185: serine-type carboxypeptidase activity4.42E-02
122GO:0015293: symporter activity4.80E-02
123GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.93E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009783: photosystem II antenna complex0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast2.76E-60
6GO:0009535: chloroplast thylakoid membrane8.51E-54
7GO:0009534: chloroplast thylakoid1.55E-52
8GO:0009941: chloroplast envelope4.79E-42
9GO:0009579: thylakoid1.20E-33
10GO:0009570: chloroplast stroma6.56E-30
11GO:0010287: plastoglobule2.27E-20
12GO:0009522: photosystem I5.20E-15
13GO:0030076: light-harvesting complex6.97E-13
14GO:0048046: apoplast1.21E-12
15GO:0009543: chloroplast thylakoid lumen5.94E-12
16GO:0031977: thylakoid lumen9.74E-11
17GO:0009517: PSII associated light-harvesting complex II3.15E-10
18GO:0009523: photosystem II3.54E-09
19GO:0030095: chloroplast photosystem II6.29E-09
20GO:0009654: photosystem II oxygen evolving complex2.26E-08
21GO:0019898: extrinsic component of membrane1.89E-07
22GO:0016020: membrane3.44E-05
23GO:0031969: chloroplast membrane4.32E-05
24GO:0042651: thylakoid membrane5.45E-05
25GO:0009538: photosystem I reaction center1.67E-04
26GO:0031361: integral component of thylakoid membrane2.02E-04
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.53E-04
28GO:0010319: stromule2.57E-04
29GO:0009706: chloroplast inner membrane2.59E-04
30GO:0043036: starch grain4.52E-04
31GO:0000427: plastid-encoded plastid RNA polymerase complex4.52E-04
32GO:0031304: intrinsic component of mitochondrial inner membrane4.52E-04
33GO:0009569: chloroplast starch grain4.52E-04
34GO:0033281: TAT protein transport complex7.36E-04
35GO:0010007: magnesium chelatase complex7.36E-04
36GO:0009509: chromoplast7.36E-04
37GO:0005960: glycine cleavage complex1.05E-03
38GO:0009544: chloroplast ATP synthase complex1.40E-03
39GO:0055035: plastid thylakoid membrane1.78E-03
40GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.19E-03
41GO:0005777: peroxisome2.20E-03
42GO:0009533: chloroplast stromal thylakoid3.09E-03
43GO:0005759: mitochondrial matrix3.17E-03
44GO:0008180: COP9 signalosome4.65E-03
45GO:0032040: small-subunit processome7.04E-03
46GO:0005938: cell cortex7.70E-03
47GO:0005578: proteinaceous extracellular matrix7.70E-03
48GO:0009508: plastid chromosome7.70E-03
49GO:0016021: integral component of membrane1.36E-02
50GO:0015629: actin cytoskeleton1.37E-02
51GO:0005623: cell1.50E-02
52GO:0009295: nucleoid2.38E-02
53GO:0019005: SCF ubiquitin ligase complex3.12E-02
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Gene type



Gene DE type