co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0010243: response to organonitrogen compound	0.00E+00
3	GO:0015843: methylammonium transport	0.00E+00
4	GO:0007623: circadian rhythm	1.46E-08
5	GO:0042754: negative regulation of circadian rhythm	1.31E-07
6	GO:0071483: cellular response to blue light	2.38E-06
7	GO:0009909: regulation of flower development	3.32E-06
8	GO:0010236: plastoquinone biosynthetic process	4.04E-06
9	GO:0048574: long-day photoperiodism, flowering	2.16E-05
10	GO:0010100: negative regulation of photomorphogenesis	2.16E-05
11	GO:0009658: chloroplast organization	4.22E-05
12	GO:0046467: membrane lipid biosynthetic process	4.60E-05
13	GO:0009640: photomorphogenesis	5.14E-05
14	GO:0006898: receptor-mediated endocytosis	1.13E-04
15	GO:0043496: regulation of protein homodimerization activity	1.13E-04
16	GO:0043100: pyrimidine nucleobase salvage	1.13E-04
17	GO:0008299: isoprenoid biosynthetic process	1.23E-04
18	GO:0009624: response to nematode	1.35E-04
19	GO:0071230: cellular response to amino acid stimulus	1.95E-04
20	GO:0044375: regulation of peroxisome size	1.95E-04
21	GO:0016570: histone modification	1.95E-04
22	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.85E-04
23	GO:0015696: ammonium transport	2.85E-04
24	GO:2001141: regulation of RNA biosynthetic process	2.85E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	2.85E-04
26	GO:0006355: regulation of transcription, DNA-templated	2.95E-04
27	GO:0009416: response to light stimulus	3.33E-04
28	GO:0071805: potassium ion transmembrane transport	3.70E-04
29	GO:0010600: regulation of auxin biosynthetic process	3.84E-04
30	GO:0009902: chloroplast relocation	3.84E-04
31	GO:0072488: ammonium transmembrane transport	3.84E-04
32	GO:0009904: chloroplast accumulation movement	4.88E-04
33	GO:0009903: chloroplast avoidance movement	7.13E-04
34	GO:0010189: vitamin E biosynthetic process	7.13E-04
35	GO:0009648: photoperiodism	7.13E-04
36	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	8.33E-04
37	GO:0006368: transcription elongation from RNA polymerase II promoter	8.33E-04
38	GO:0030091: protein repair	9.57E-04
39	GO:0016559: peroxisome fission	9.57E-04
40	GO:0009932: cell tip growth	1.09E-03
41	GO:0034765: regulation of ion transmembrane transport	1.22E-03
42	GO:0006995: cellular response to nitrogen starvation	1.51E-03
43	GO:0009970: cellular response to sulfate starvation	1.51E-03
44	GO:0008285: negative regulation of cell proliferation	1.66E-03
45	GO:0006352: DNA-templated transcription, initiation	1.66E-03
46	GO:0000272: polysaccharide catabolic process	1.66E-03
47	GO:0016485: protein processing	1.66E-03
48	GO:0006816: calcium ion transport	1.66E-03
49	GO:0006351: transcription, DNA-templated	1.79E-03
50	GO:0009785: blue light signaling pathway	1.98E-03
51	GO:0010207: photosystem II assembly	2.14E-03
52	GO:0007015: actin filament organization	2.14E-03
53	GO:0007031: peroxisome organization	2.31E-03
54	GO:0045893: positive regulation of transcription, DNA-templated	2.60E-03
55	GO:0051017: actin filament bundle assembly	2.67E-03
56	GO:0006874: cellular calcium ion homeostasis	2.85E-03
57	GO:0010073: meristem maintenance	2.85E-03
58	GO:0010228: vegetative to reproductive phase transition of meristem	2.86E-03
59	GO:0009739: response to gibberellin	3.06E-03
60	GO:0010017: red or far-red light signaling pathway	3.23E-03
61	GO:0040007: growth	3.43E-03
62	GO:0010227: floral organ abscission	3.43E-03
63	GO:0042391: regulation of membrane potential	4.04E-03
64	GO:0010182: sugar mediated signaling pathway	4.25E-03
65	GO:0042752: regulation of circadian rhythm	4.47E-03
66	GO:0009851: auxin biosynthetic process	4.68E-03
67	GO:0009723: response to ethylene	4.86E-03
68	GO:0009630: gravitropism	5.13E-03
69	GO:0006464: cellular protein modification process	5.60E-03
70	GO:0009567: double fertilization forming a zygote and endosperm	5.60E-03
71	GO:0015979: photosynthesis	5.94E-03
72	GO:0045454: cell redox homeostasis	6.23E-03
73	GO:0016126: sterol biosynthetic process	6.32E-03
74	GO:0045892: negative regulation of transcription, DNA-templated	6.33E-03
75	GO:0009751: response to salicylic acid	7.57E-03
76	GO:0018298: protein-chromophore linkage	7.60E-03
77	GO:0008219: cell death	7.60E-03
78	GO:0009409: response to cold	7.81E-03
79	GO:0010218: response to far red light	8.14E-03
80	GO:0009753: response to jasmonic acid	8.24E-03
81	GO:0006865: amino acid transport	8.68E-03
82	GO:0045087: innate immune response	8.96E-03
83	GO:0009637: response to blue light	8.96E-03
84	GO:0034599: cellular response to oxidative stress	9.25E-03
85	GO:0042542: response to hydrogen peroxide	1.04E-02
86	GO:0010114: response to red light	1.07E-02
87	GO:0009585: red, far-red light phototransduction	1.32E-02
88	GO:0006813: potassium ion transport	1.32E-02
89	GO:0010224: response to UV-B	1.35E-02
90	GO:0009737: response to abscisic acid	1.39E-02
91	GO:0042744: hydrogen peroxide catabolic process	2.18E-02
92	GO:0016036: cellular response to phosphate starvation	2.38E-02
93	GO:0009651: response to salt stress	2.46E-02
94	GO:0045490: pectin catabolic process	2.50E-02
95	GO:0010468: regulation of gene expression	2.84E-02
96	GO:0009733: response to auxin	3.11E-02
97	GO:0006810: transport	4.06E-02
98	GO:0010200: response to chitin	4.08E-02
99	GO:0044550: secondary metabolite biosynthetic process	4.23E-02
100	GO:0046686: response to cadmium ion	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0050347: trans-octaprenyltranstransferase activity	1.31E-07
4	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.31E-07
5	GO:0000989: transcription factor activity, transcription factor binding	2.71E-05
6	GO:0042802: identical protein binding	2.88E-05
7	GO:0008066: glutamate receptor activity	4.60E-05
8	GO:0004328: formamidase activity	4.60E-05
9	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	4.60E-05
10	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	4.60E-05
11	GO:0019904: protein domain specific binding	4.81E-05
12	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.09E-05
13	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	1.13E-04
14	GO:0015173: aromatic amino acid transmembrane transporter activity	1.13E-04
15	GO:0003913: DNA photolyase activity	1.95E-04
16	GO:0004096: catalase activity	1.95E-04
17	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	1.95E-04
18	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.85E-04
19	GO:0015175: neutral amino acid transmembrane transporter activity	2.85E-04
20	GO:0004506: squalene monooxygenase activity	3.84E-04
21	GO:0001053: plastid sigma factor activity	3.84E-04
22	GO:0016987: sigma factor activity	3.84E-04
23	GO:0008519: ammonium transmembrane transporter activity	5.98E-04
24	GO:0004709: MAP kinase kinase kinase activity	5.98E-04
25	GO:0016161: beta-amylase activity	7.13E-04
26	GO:0005242: inward rectifier potassium channel activity	7.13E-04
27	GO:0005515: protein binding	7.74E-04
28	GO:0009881: photoreceptor activity	8.33E-04
29	GO:0003677: DNA binding	9.47E-04
30	GO:0030674: protein binding, bridging	9.57E-04
31	GO:0005262: calcium channel activity	1.98E-03
32	GO:0005217: intracellular ligand-gated ion channel activity	2.31E-03
33	GO:0004970: ionotropic glutamate receptor activity	2.31E-03
34	GO:0015079: potassium ion transmembrane transporter activity	2.85E-03
35	GO:0030570: pectate lyase activity	3.43E-03
36	GO:0005249: voltage-gated potassium channel activity	4.04E-03
37	GO:0030551: cyclic nucleotide binding	4.04E-03
38	GO:0004527: exonuclease activity	4.25E-03
39	GO:0010181: FMN binding	4.47E-03
40	GO:0016791: phosphatase activity	5.60E-03
41	GO:0008270: zinc ion binding	5.89E-03
42	GO:0004871: signal transducer activity	6.53E-03
43	GO:0004721: phosphoprotein phosphatase activity	7.08E-03
44	GO:0050897: cobalt ion binding	8.41E-03
45	GO:0030145: manganese ion binding	8.41E-03
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.53E-03
47	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.32E-02
48	GO:0015171: amino acid transmembrane transporter activity	1.42E-02
49	GO:0015035: protein disulfide oxidoreductase activity	1.73E-02
50	GO:0050660: flavin adenine dinucleotide binding	3.79E-02
51	GO:0004672: protein kinase activity	4.06E-02
52	GO:0043565: sequence-specific DNA binding	4.16E-02
53	GO:0020037: heme binding	4.36E-02
54	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.78E-02
55	GO:0004722: protein serine/threonine phosphatase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009526: plastid envelope	3.84E-04
2	GO:0016593: Cdc73/Paf1 complex	3.84E-04
3	GO:0005777: peroxisome	4.14E-04
4	GO:0031982: vesicle	9.57E-04
5	GO:0009514: glyoxysome	1.09E-03
6	GO:0005779: integral component of peroxisomal membrane	1.09E-03
7	GO:0005884: actin filament	1.66E-03
8	GO:0009532: plastid stroma	3.04E-03
9	GO:0005778: peroxisomal membrane	5.84E-03
10	GO:0010319: stromule	5.84E-03
11	GO:0005887: integral component of plasma membrane	1.04E-02
12	GO:0005834: heterotrimeric G-protein complex	1.56E-02
13	GO:0009507: chloroplast	2.76E-02
14	GO:0009536: plastid	3.40E-02
15	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.65E-02
16	GO:0031969: chloroplast membrane	3.98E-02