GO Enrichment Analysis of Co-expressed Genes with
AT2G20725
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:1901965: endoplasmic reticulum to chloroplast transport | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.35E-05 |
| 5 | GO:0006605: protein targeting | 8.68E-05 |
| 6 | GO:0048564: photosystem I assembly | 8.68E-05 |
| 7 | GO:0033388: putrescine biosynthetic process from arginine | 1.31E-04 |
| 8 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.31E-04 |
| 9 | GO:1990052: ER to chloroplast lipid transport | 1.31E-04 |
| 10 | GO:0071806: protein transmembrane transport | 1.31E-04 |
| 11 | GO:1904964: positive regulation of phytol biosynthetic process | 1.31E-04 |
| 12 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.31E-04 |
| 13 | GO:1902458: positive regulation of stomatal opening | 1.31E-04 |
| 14 | GO:0009767: photosynthetic electron transport chain | 2.95E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.03E-04 |
| 16 | GO:0006435: threonyl-tRNA aminoacylation | 3.03E-04 |
| 17 | GO:0006741: NADP biosynthetic process | 3.03E-04 |
| 18 | GO:0080005: photosystem stoichiometry adjustment | 3.03E-04 |
| 19 | GO:0048314: embryo sac morphogenesis | 3.03E-04 |
| 20 | GO:0000256: allantoin catabolic process | 3.03E-04 |
| 21 | GO:0009446: putrescine biosynthetic process | 3.03E-04 |
| 22 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.03E-04 |
| 23 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.03E-04 |
| 24 | GO:0019853: L-ascorbic acid biosynthetic process | 3.75E-04 |
| 25 | GO:0010136: ureide catabolic process | 4.99E-04 |
| 26 | GO:0051604: protein maturation | 4.99E-04 |
| 27 | GO:0005977: glycogen metabolic process | 4.99E-04 |
| 28 | GO:0019674: NAD metabolic process | 4.99E-04 |
| 29 | GO:0006364: rRNA processing | 5.46E-04 |
| 30 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.14E-04 |
| 31 | GO:0006145: purine nucleobase catabolic process | 7.14E-04 |
| 32 | GO:0051016: barbed-end actin filament capping | 7.14E-04 |
| 33 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.14E-04 |
| 34 | GO:2001141: regulation of RNA biosynthetic process | 7.14E-04 |
| 35 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.14E-04 |
| 36 | GO:0019363: pyridine nucleotide biosynthetic process | 7.14E-04 |
| 37 | GO:0009306: protein secretion | 7.24E-04 |
| 38 | GO:0009793: embryo development ending in seed dormancy | 7.44E-04 |
| 39 | GO:0006021: inositol biosynthetic process | 9.47E-04 |
| 40 | GO:0010021: amylopectin biosynthetic process | 9.47E-04 |
| 41 | GO:0009765: photosynthesis, light harvesting | 9.47E-04 |
| 42 | GO:0016120: carotene biosynthetic process | 1.20E-03 |
| 43 | GO:0016558: protein import into peroxisome matrix | 1.20E-03 |
| 44 | GO:0016123: xanthophyll biosynthetic process | 1.20E-03 |
| 45 | GO:0046855: inositol phosphate dephosphorylation | 1.47E-03 |
| 46 | GO:0010190: cytochrome b6f complex assembly | 1.47E-03 |
| 47 | GO:0009643: photosynthetic acclimation | 1.47E-03 |
| 48 | GO:0042549: photosystem II stabilization | 1.47E-03 |
| 49 | GO:0010027: thylakoid membrane organization | 1.58E-03 |
| 50 | GO:0017148: negative regulation of translation | 1.76E-03 |
| 51 | GO:0010189: vitamin E biosynthetic process | 1.76E-03 |
| 52 | GO:1900056: negative regulation of leaf senescence | 2.06E-03 |
| 53 | GO:0007568: aging | 2.37E-03 |
| 54 | GO:0009642: response to light intensity | 2.39E-03 |
| 55 | GO:0030091: protein repair | 2.39E-03 |
| 56 | GO:2000070: regulation of response to water deprivation | 2.39E-03 |
| 57 | GO:0032544: plastid translation | 2.73E-03 |
| 58 | GO:0071482: cellular response to light stimulus | 2.73E-03 |
| 59 | GO:0009658: chloroplast organization | 2.90E-03 |
| 60 | GO:0000373: Group II intron splicing | 3.08E-03 |
| 61 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.46E-03 |
| 62 | GO:0006352: DNA-templated transcription, initiation | 4.24E-03 |
| 63 | GO:0006790: sulfur compound metabolic process | 4.65E-03 |
| 64 | GO:0006807: nitrogen compound metabolic process | 5.08E-03 |
| 65 | GO:0009725: response to hormone | 5.08E-03 |
| 66 | GO:0010207: photosystem II assembly | 5.52E-03 |
| 67 | GO:0090351: seedling development | 5.97E-03 |
| 68 | GO:0046854: phosphatidylinositol phosphorylation | 5.97E-03 |
| 69 | GO:0009553: embryo sac development | 6.16E-03 |
| 70 | GO:0006863: purine nucleobase transport | 6.43E-03 |
| 71 | GO:0009863: salicylic acid mediated signaling pathway | 6.91E-03 |
| 72 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 73 | GO:0007017: microtubule-based process | 7.40E-03 |
| 74 | GO:0051321: meiotic cell cycle | 7.91E-03 |
| 75 | GO:0048511: rhythmic process | 7.91E-03 |
| 76 | GO:0055114: oxidation-reduction process | 8.24E-03 |
| 77 | GO:0006012: galactose metabolic process | 8.95E-03 |
| 78 | GO:0016117: carotenoid biosynthetic process | 1.00E-02 |
| 79 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 80 | GO:0048868: pollen tube development | 1.12E-02 |
| 81 | GO:0009451: RNA modification | 1.12E-02 |
| 82 | GO:0042752: regulation of circadian rhythm | 1.18E-02 |
| 83 | GO:0019252: starch biosynthetic process | 1.24E-02 |
| 84 | GO:0008654: phospholipid biosynthetic process | 1.24E-02 |
| 85 | GO:0009416: response to light stimulus | 1.29E-02 |
| 86 | GO:0010193: response to ozone | 1.30E-02 |
| 87 | GO:0006635: fatty acid beta-oxidation | 1.30E-02 |
| 88 | GO:0016032: viral process | 1.36E-02 |
| 89 | GO:0006810: transport | 1.48E-02 |
| 90 | GO:0006464: cellular protein modification process | 1.49E-02 |
| 91 | GO:0042254: ribosome biogenesis | 1.74E-02 |
| 92 | GO:0006457: protein folding | 1.79E-02 |
| 93 | GO:0042128: nitrate assimilation | 1.82E-02 |
| 94 | GO:0009817: defense response to fungus, incompatible interaction | 2.03E-02 |
| 95 | GO:0048481: plant ovule development | 2.03E-02 |
| 96 | GO:0018298: protein-chromophore linkage | 2.03E-02 |
| 97 | GO:0080167: response to karrikin | 2.12E-02 |
| 98 | GO:0009910: negative regulation of flower development | 2.25E-02 |
| 99 | GO:0000724: double-strand break repair via homologous recombination | 2.33E-02 |
| 100 | GO:0009637: response to blue light | 2.41E-02 |
| 101 | GO:0009853: photorespiration | 2.41E-02 |
| 102 | GO:0010114: response to red light | 2.88E-02 |
| 103 | GO:0009744: response to sucrose | 2.88E-02 |
| 104 | GO:0009644: response to high light intensity | 3.05E-02 |
| 105 | GO:0031347: regulation of defense response | 3.30E-02 |
| 106 | GO:0010224: response to UV-B | 3.65E-02 |
| 107 | GO:0009409: response to cold | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 4 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 5 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 8 | GO:0004830: tryptophan-tRNA ligase activity | 1.31E-04 |
| 9 | GO:0042736: NADH kinase activity | 1.31E-04 |
| 10 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.31E-04 |
| 11 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.31E-04 |
| 12 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.03E-04 |
| 13 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.03E-04 |
| 14 | GO:0004829: threonine-tRNA ligase activity | 3.03E-04 |
| 15 | GO:0019156: isoamylase activity | 3.03E-04 |
| 16 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.03E-04 |
| 17 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.03E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.99E-04 |
| 19 | GO:0004751: ribose-5-phosphate isomerase activity | 4.99E-04 |
| 20 | GO:0043023: ribosomal large subunit binding | 7.14E-04 |
| 21 | GO:0043495: protein anchor | 9.47E-04 |
| 22 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 9.47E-04 |
| 23 | GO:0001053: plastid sigma factor activity | 9.47E-04 |
| 24 | GO:0005319: lipid transporter activity | 9.47E-04 |
| 25 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.47E-04 |
| 26 | GO:0016987: sigma factor activity | 9.47E-04 |
| 27 | GO:0048038: quinone binding | 1.11E-03 |
| 28 | GO:0042578: phosphoric ester hydrolase activity | 1.47E-03 |
| 29 | GO:0004556: alpha-amylase activity | 1.47E-03 |
| 30 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.47E-03 |
| 31 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.76E-03 |
| 32 | GO:0008195: phosphatidate phosphatase activity | 1.76E-03 |
| 33 | GO:0019899: enzyme binding | 2.06E-03 |
| 34 | GO:0004033: aldo-keto reductase (NADP) activity | 2.39E-03 |
| 35 | GO:0003951: NAD+ kinase activity | 2.73E-03 |
| 36 | GO:0016491: oxidoreductase activity | 3.34E-03 |
| 37 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.59E-03 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.87E-03 |
| 39 | GO:0009055: electron carrier activity | 6.82E-03 |
| 40 | GO:0005528: FK506 binding | 6.91E-03 |
| 41 | GO:0005345: purine nucleobase transmembrane transporter activity | 7.40E-03 |
| 42 | GO:0043424: protein histidine kinase binding | 7.40E-03 |
| 43 | GO:0004176: ATP-dependent peptidase activity | 7.91E-03 |
| 44 | GO:0019843: rRNA binding | 7.95E-03 |
| 45 | GO:0022891: substrate-specific transmembrane transporter activity | 8.95E-03 |
| 46 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 47 | GO:0004872: receptor activity | 1.24E-02 |
| 48 | GO:0042802: identical protein binding | 1.40E-02 |
| 49 | GO:0008483: transaminase activity | 1.55E-02 |
| 50 | GO:0016168: chlorophyll binding | 1.75E-02 |
| 51 | GO:0008236: serine-type peptidase activity | 1.96E-02 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.03E-02 |
| 53 | GO:0008233: peptidase activity | 2.08E-02 |
| 54 | GO:0050897: cobalt ion binding | 2.25E-02 |
| 55 | GO:0005515: protein binding | 2.41E-02 |
| 56 | GO:0003993: acid phosphatase activity | 2.48E-02 |
| 57 | GO:0004364: glutathione transferase activity | 2.80E-02 |
| 58 | GO:0005506: iron ion binding | 3.08E-02 |
| 59 | GO:0003924: GTPase activity | 3.12E-02 |
| 60 | GO:0004519: endonuclease activity | 3.40E-02 |
| 61 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.56E-02 |
| 62 | GO:0003777: microtubule motor activity | 3.83E-02 |
| 63 | GO:0031625: ubiquitin protein ligase binding | 3.83E-02 |
| 64 | GO:0003779: actin binding | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.94E-30 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.30E-14 |
| 4 | GO:0009534: chloroplast thylakoid | 2.22E-06 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 9.88E-06 |
| 6 | GO:0009941: chloroplast envelope | 1.80E-05 |
| 7 | GO:0009570: chloroplast stroma | 6.89E-05 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.34E-04 |
| 9 | GO:0080085: signal recognition particle, chloroplast targeting | 3.03E-04 |
| 10 | GO:0008290: F-actin capping protein complex | 3.03E-04 |
| 11 | GO:0031977: thylakoid lumen | 3.34E-04 |
| 12 | GO:0030095: chloroplast photosystem II | 3.34E-04 |
| 13 | GO:0033281: TAT protein transport complex | 4.99E-04 |
| 14 | GO:0009528: plastid inner membrane | 4.99E-04 |
| 15 | GO:0009526: plastid envelope | 9.47E-04 |
| 16 | GO:0030286: dynein complex | 9.47E-04 |
| 17 | GO:0009523: photosystem II | 1.04E-03 |
| 18 | GO:0055035: plastid thylakoid membrane | 1.20E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 2.06E-03 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.73E-03 |
| 21 | GO:0042644: chloroplast nucleoid | 3.08E-03 |
| 22 | GO:0009579: thylakoid | 3.72E-03 |
| 23 | GO:0031969: chloroplast membrane | 3.81E-03 |
| 24 | GO:0009508: plastid chromosome | 5.08E-03 |
| 25 | GO:0005747: mitochondrial respiratory chain complex I | 5.45E-03 |
| 26 | GO:0005875: microtubule associated complex | 6.43E-03 |
| 27 | GO:0042651: thylakoid membrane | 7.40E-03 |
| 28 | GO:0045271: respiratory chain complex I | 7.40E-03 |
| 29 | GO:0009654: photosystem II oxygen evolving complex | 7.40E-03 |
| 30 | GO:0005623: cell | 8.17E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 1.24E-02 |
| 32 | GO:0009295: nucleoid | 1.55E-02 |
| 33 | GO:0005778: peroxisomal membrane | 1.55E-02 |
| 34 | GO:0031966: mitochondrial membrane | 3.39E-02 |
| 35 | GO:0016021: integral component of membrane | 4.11E-02 |