co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007530: sex determination	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0044843: cell cycle G1/S phase transition	0.00E+00
4	GO:0006412: translation	1.14E-125
5	GO:0042254: ribosome biogenesis	1.50E-37
6	GO:0000027: ribosomal large subunit assembly	2.65E-11
7	GO:0000028: ribosomal small subunit assembly	8.76E-10
8	GO:0009735: response to cytokinin	1.73E-06
9	GO:0006626: protein targeting to mitochondrion	1.98E-06
10	GO:0006458: 'de novo' protein folding	4.29E-06
11	GO:0009955: adaxial/abaxial pattern specification	4.29E-06
12	GO:0045041: protein import into mitochondrial intermembrane space	5.06E-06
13	GO:1902626: assembly of large subunit precursor of preribosome	1.79E-05
14	GO:0061077: chaperone-mediated protein folding	1.83E-04
15	GO:0042026: protein refolding	2.18E-04
16	GO:0000413: protein peptidyl-prolyl isomerization	3.28E-04
17	GO:1990258: histone glutamine methylation	3.34E-04
18	GO:0006407: rRNA export from nucleus	3.34E-04
19	GO:0015801: aromatic amino acid transport	3.34E-04
20	GO:0048453: sepal formation	3.34E-04
21	GO:0031060: regulation of histone methylation	3.34E-04
22	GO:0030490: maturation of SSU-rRNA	3.34E-04
23	GO:0000494: box C/D snoRNA 3'-end processing	3.34E-04
24	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.34E-04
25	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.34E-04
26	GO:0000387: spliceosomal snRNP assembly	6.19E-04
27	GO:0051788: response to misfolded protein	7.29E-04
28	GO:0015786: UDP-glucose transport	7.29E-04
29	GO:0045905: positive regulation of translational termination	7.29E-04
30	GO:0009156: ribonucleoside monophosphate biosynthetic process	7.29E-04
31	GO:0045901: positive regulation of translational elongation	7.29E-04
32	GO:0048569: post-embryonic animal organ development	7.29E-04
33	GO:0006452: translational frameshifting	7.29E-04
34	GO:0010198: synergid death	7.29E-04
35	GO:0009967: positive regulation of signal transduction	7.29E-04
36	GO:0006820: anion transport	9.49E-04
37	GO:0000398: mRNA splicing, via spliceosome	1.01E-03
38	GO:0006954: inflammatory response	1.18E-03
39	GO:0002181: cytoplasmic translation	1.18E-03
40	GO:0015783: GDP-fucose transport	1.18E-03
41	GO:0010476: gibberellin mediated signaling pathway	1.18E-03
42	GO:0042256: mature ribosome assembly	1.18E-03
43	GO:0090506: axillary shoot meristem initiation	1.18E-03
44	GO:0010338: leaf formation	1.18E-03
45	GO:0030150: protein import into mitochondrial matrix	1.66E-03
46	GO:0006413: translational initiation	1.67E-03
47	GO:0006165: nucleoside diphosphate phosphorylation	1.70E-03
48	GO:0006228: UTP biosynthetic process	1.70E-03
49	GO:0006164: purine nucleotide biosynthetic process	1.70E-03
50	GO:0009647: skotomorphogenesis	1.70E-03
51	GO:0009558: embryo sac cellularization	1.70E-03
52	GO:0070301: cellular response to hydrogen peroxide	1.70E-03
53	GO:0051085: chaperone mediated protein folding requiring cofactor	1.70E-03
54	GO:0006241: CTP biosynthetic process	1.70E-03
55	GO:0072334: UDP-galactose transmembrane transport	1.70E-03
56	GO:0008283: cell proliferation	1.98E-03
57	GO:2000032: regulation of secondary shoot formation	2.28E-03
58	GO:0009165: nucleotide biosynthetic process	2.28E-03
59	GO:0042274: ribosomal small subunit biogenesis	2.28E-03
60	GO:0006183: GTP biosynthetic process	2.28E-03
61	GO:0006621: protein retention in ER lumen	2.28E-03
62	GO:0006364: rRNA processing	2.89E-03
63	GO:0031167: rRNA methylation	2.91E-03
64	GO:0008033: tRNA processing	3.06E-03
65	GO:0016070: RNA metabolic process	3.60E-03
66	GO:0000470: maturation of LSU-rRNA	3.60E-03
67	GO:0043248: proteasome assembly	3.60E-03
68	GO:0010358: leaf shaping	3.60E-03
69	GO:0009612: response to mechanical stimulus	4.33E-03
70	GO:0009554: megasporogenesis	4.33E-03
71	GO:1901001: negative regulation of response to salt stress	4.33E-03
72	GO:0009651: response to salt stress	4.95E-03
73	GO:0048528: post-embryonic root development	5.11E-03
74	GO:0050821: protein stabilization	5.94E-03
75	GO:0031540: regulation of anthocyanin biosynthetic process	5.94E-03
76	GO:0001510: RNA methylation	6.81E-03
77	GO:0001558: regulation of cell growth	6.81E-03
78	GO:0010204: defense response signaling pathway, resistance gene-independent	6.81E-03
79	GO:0006189: 'de novo' IMP biosynthetic process	7.73E-03
80	GO:0098656: anion transmembrane transport	7.73E-03
81	GO:0009245: lipid A biosynthetic process	7.73E-03
82	GO:0010449: root meristem growth	8.68E-03
83	GO:0006457: protein folding	9.91E-03
84	GO:0015770: sucrose transport	1.07E-02
85	GO:0048229: gametophyte development	1.07E-02
86	GO:0010015: root morphogenesis	1.07E-02
87	GO:0006913: nucleocytoplasmic transport	1.07E-02
88	GO:0008380: RNA splicing	1.14E-02
89	GO:0010102: lateral root morphogenesis	1.29E-02
90	GO:0010628: positive regulation of gene expression	1.29E-02
91	GO:0009644: response to high light intensity	1.37E-02
92	GO:0009793: embryo development ending in seed dormancy	1.39E-02
93	GO:0009933: meristem structural organization	1.41E-02
94	GO:0006446: regulation of translational initiation	1.41E-02
95	GO:0048467: gynoecium development	1.41E-02
96	GO:0048440: carpel development	1.41E-02
97	GO:0009965: leaf morphogenesis	1.42E-02
98	GO:0051603: proteolysis involved in cellular protein catabolic process	1.77E-02
99	GO:0006289: nucleotide-excision repair	1.77E-02
100	GO:0009116: nucleoside metabolic process	1.77E-02
101	GO:0051302: regulation of cell division	1.90E-02
102	GO:0003333: amino acid transmembrane transport	2.03E-02
103	GO:0051260: protein homooligomerization	2.03E-02
104	GO:0010431: seed maturation	2.03E-02
105	GO:0007005: mitochondrion organization	2.17E-02
106	GO:0071215: cellular response to abscisic acid stimulus	2.31E-02
107	GO:0010082: regulation of root meristem growth	2.31E-02
108	GO:0040007: growth	2.31E-02
109	GO:0009553: embryo sac development	2.36E-02
110	GO:0010089: xylem development	2.45E-02
111	GO:0048443: stamen development	2.45E-02
112	GO:0010305: leaf vascular tissue pattern formation	2.89E-02
113	GO:0010197: polar nucleus fusion	2.89E-02
114	GO:0015031: protein transport	3.19E-02
115	GO:0048825: cotyledon development	3.20E-02
116	GO:0009749: response to glucose	3.20E-02
117	GO:0009556: microsporogenesis	3.20E-02
118	GO:0010183: pollen tube guidance	3.20E-02
119	GO:0006635: fatty acid beta-oxidation	3.36E-02
120	GO:0080156: mitochondrial mRNA modification	3.36E-02
121	GO:0030163: protein catabolic process	3.69E-02
122	GO:0010252: auxin homeostasis	3.85E-02
123	GO:0006414: translational elongation	3.87E-02
124	GO:0046686: response to cadmium ion	4.45E-02
125	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0005212: structural constituent of eye lens	0.00E+00
3	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
4	GO:0003735: structural constituent of ribosome	2.56E-146
5	GO:0003729: mRNA binding	1.97E-32
6	GO:0019843: rRNA binding	3.36E-13
7	GO:0044183: protein binding involved in protein folding	1.05E-06
8	GO:0003746: translation elongation factor activity	1.57E-05
9	GO:0003723: RNA binding	2.96E-05
10	GO:0008097: 5S rRNA binding	3.96E-05
11	GO:0051082: unfolded protein binding	1.23E-04
12	GO:1990259: histone-glutamine methyltransferase activity	3.34E-04
13	GO:0035614: snRNA stem-loop binding	3.34E-04
14	GO:0043022: ribosome binding	3.55E-04
15	GO:0015288: porin activity	3.55E-04
16	GO:0008308: voltage-gated anion channel activity	4.36E-04
17	GO:0005078: MAP-kinase scaffold activity	7.29E-04
18	GO:0030619: U1 snRNA binding	7.29E-04
19	GO:0015173: aromatic amino acid transmembrane transporter activity	7.29E-04
20	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.06E-03
21	GO:0032947: protein complex scaffold	1.18E-03
22	GO:0008649: rRNA methyltransferase activity	1.18E-03
23	GO:0005457: GDP-fucose transmembrane transporter activity	1.18E-03
24	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.18E-03
25	GO:0005460: UDP-glucose transmembrane transporter activity	1.70E-03
26	GO:0004550: nucleoside diphosphate kinase activity	1.70E-03
27	GO:0004749: ribose phosphate diphosphokinase activity	1.70E-03
28	GO:0004298: threonine-type endopeptidase activity	2.02E-03
29	GO:0070628: proteasome binding	2.28E-03
30	GO:0016004: phospholipase activator activity	2.28E-03
31	GO:0046923: ER retention sequence binding	2.28E-03
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.41E-03
33	GO:0005275: amine transmembrane transporter activity	2.91E-03
34	GO:0005459: UDP-galactose transmembrane transporter activity	2.91E-03
35	GO:0031593: polyubiquitin binding	3.60E-03
36	GO:0031177: phosphopantetheine binding	3.60E-03
37	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.60E-03
38	GO:0000035: acyl binding	4.33E-03
39	GO:0008233: peptidase activity	4.90E-03
40	GO:0030515: snoRNA binding	5.11E-03
41	GO:0008235: metalloexopeptidase activity	5.11E-03
42	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.94E-03
43	GO:0001055: RNA polymerase II activity	8.68E-03
44	GO:0008515: sucrose transmembrane transporter activity	1.07E-02
45	GO:0001054: RNA polymerase I activity	1.07E-02
46	GO:0003743: translation initiation factor activity	1.11E-02
47	GO:0001056: RNA polymerase III activity	1.18E-02
48	GO:0015266: protein channel activity	1.29E-02
49	GO:0031072: heat shock protein binding	1.29E-02
50	GO:0051119: sugar transmembrane transporter activity	1.53E-02
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.71E-02
52	GO:0043130: ubiquitin binding	1.77E-02
53	GO:0051087: chaperone binding	1.90E-02
54	GO:0008514: organic anion transmembrane transporter activity	2.45E-02
55	GO:0010181: FMN binding	3.05E-02
56	GO:0004872: receptor activity	3.20E-02
57	GO:0003684: damaged DNA binding	3.85E-02
58	GO:0008237: metallopeptidase activity	4.02E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005840: ribosome	1.89E-97
4	GO:0022625: cytosolic large ribosomal subunit	5.57E-91
5	GO:0022626: cytosolic ribosome	1.56E-88
6	GO:0022627: cytosolic small ribosomal subunit	5.34E-60
7	GO:0005737: cytoplasm	2.26E-30
8	GO:0005829: cytosol	9.46E-30
9	GO:0005730: nucleolus	1.36E-27
10	GO:0009506: plasmodesma	1.03E-21
11	GO:0015934: large ribosomal subunit	3.07E-20
12	GO:0005774: vacuolar membrane	1.61E-17
13	GO:0016020: membrane	5.01E-10
14	GO:0005773: vacuole	5.33E-10
15	GO:0015935: small ribosomal subunit	4.05E-09
16	GO:0005618: cell wall	1.21E-08
17	GO:0005732: small nucleolar ribonucleoprotein complex	1.09E-06
18	GO:0005681: spliceosomal complex	7.07E-06
19	GO:0005886: plasma membrane	8.60E-06
20	GO:0000502: proteasome complex	5.75E-05
21	GO:0019013: viral nucleocapsid	6.97E-05
22	GO:0009507: chloroplast	8.08E-05
23	GO:0030686: 90S preribosome	3.34E-04
24	GO:0046930: pore complex	4.36E-04
25	GO:0005685: U1 snRNP	5.24E-04
26	GO:0035145: exon-exon junction complex	7.29E-04
27	GO:0005665: DNA-directed RNA polymerase II, core complex	9.49E-04
28	GO:0034719: SMN-Sm protein complex	1.18E-03
29	GO:0005853: eukaryotic translation elongation factor 1 complex	1.18E-03
30	GO:0000419: DNA-directed RNA polymerase V complex	1.50E-03
31	GO:0005758: mitochondrial intermembrane space	1.66E-03
32	GO:0005741: mitochondrial outer membrane	2.02E-03
33	GO:0005839: proteasome core complex	2.02E-03
34	GO:0005682: U5 snRNP	2.28E-03
35	GO:0005687: U4 snRNP	2.91E-03
36	GO:0097526: spliceosomal tri-snRNP complex	2.91E-03
37	GO:0031428: box C/D snoRNP complex	3.60E-03
38	GO:0005689: U12-type spliceosomal complex	4.33E-03
39	GO:0016272: prefoldin complex	4.33E-03
40	GO:0071004: U2-type prespliceosome	5.94E-03
41	GO:0005688: U6 snRNP	5.94E-03
42	GO:0005742: mitochondrial outer membrane translocase complex	6.81E-03
43	GO:0046540: U4/U6 x U5 tri-snRNP complex	6.81E-03
44	GO:0005736: DNA-directed RNA polymerase I complex	7.73E-03
45	GO:0005759: mitochondrial matrix	8.07E-03
46	GO:0005743: mitochondrial inner membrane	8.14E-03
47	GO:0005666: DNA-directed RNA polymerase III complex	8.68E-03
48	GO:0071011: precatalytic spliceosome	8.68E-03
49	GO:0015030: Cajal body	8.68E-03
50	GO:0005686: U2 snRNP	9.69E-03
51	GO:0000418: DNA-directed RNA polymerase IV complex	9.69E-03
52	GO:0008541: proteasome regulatory particle, lid subcomplex	1.07E-02
53	GO:0071013: catalytic step 2 spliceosome	1.07E-02
54	GO:0048471: perinuclear region of cytoplasm	1.07E-02
55	GO:0005852: eukaryotic translation initiation factor 3 complex	1.07E-02
56	GO:0032040: small-subunit processome	1.18E-02
57	GO:0005769: early endosome	1.65E-02
58	GO:0005622: intracellular	1.71E-02
59	GO:0070469: respiratory chain	1.90E-02
60	GO:0005747: mitochondrial respiratory chain complex I	2.09E-02
61	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.45E-02
62	GO:0030529: intracellular ribonucleoprotein complex	4.37E-02