GO Enrichment Analysis of Co-expressed Genes with
AT2G19540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 2 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 3 | GO:0043137: DNA replication, removal of RNA primer | 0.00E+00 |
| 4 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 1.61E-14 |
| 7 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.18E-07 |
| 8 | GO:0010501: RNA secondary structure unwinding | 1.37E-06 |
| 9 | GO:0000460: maturation of 5.8S rRNA | 1.51E-05 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 1.51E-05 |
| 11 | GO:0006412: translation | 3.30E-05 |
| 12 | GO:0000470: maturation of LSU-rRNA | 3.71E-05 |
| 13 | GO:0009553: embryo sac development | 9.38E-05 |
| 14 | GO:0006396: RNA processing | 1.04E-04 |
| 15 | GO:0043985: histone H4-R3 methylation | 1.35E-04 |
| 16 | GO:0035266: meristem growth | 1.35E-04 |
| 17 | GO:0006177: GMP biosynthetic process | 1.35E-04 |
| 18 | GO:0010162: seed dormancy process | 2.00E-04 |
| 19 | GO:0080009: mRNA methylation | 3.11E-04 |
| 20 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 3.11E-04 |
| 21 | GO:0045041: protein import into mitochondrial intermembrane space | 3.11E-04 |
| 22 | GO:0034470: ncRNA processing | 3.11E-04 |
| 23 | GO:0048569: post-embryonic animal organ development | 3.11E-04 |
| 24 | GO:0000027: ribosomal large subunit assembly | 4.84E-04 |
| 25 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.84E-04 |
| 26 | GO:1902626: assembly of large subunit precursor of preribosome | 5.13E-04 |
| 27 | GO:0042256: mature ribosome assembly | 5.13E-04 |
| 28 | GO:0042254: ribosome biogenesis | 5.24E-04 |
| 29 | GO:0007005: mitochondrion organization | 6.38E-04 |
| 30 | GO:0009294: DNA mediated transformation | 6.94E-04 |
| 31 | GO:0009855: determination of bilateral symmetry | 7.34E-04 |
| 32 | GO:0051131: chaperone-mediated protein complex assembly | 7.34E-04 |
| 33 | GO:0007276: gamete generation | 7.34E-04 |
| 34 | GO:0006479: protein methylation | 9.73E-04 |
| 35 | GO:1900864: mitochondrial RNA modification | 9.73E-04 |
| 36 | GO:0010375: stomatal complex patterning | 1.23E-03 |
| 37 | GO:0016554: cytidine to uridine editing | 1.51E-03 |
| 38 | GO:0042026: protein refolding | 1.81E-03 |
| 39 | GO:0000054: ribosomal subunit export from nucleus | 1.81E-03 |
| 40 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.81E-03 |
| 41 | GO:0006458: 'de novo' protein folding | 1.81E-03 |
| 42 | GO:0016444: somatic cell DNA recombination | 1.81E-03 |
| 43 | GO:0009451: RNA modification | 1.81E-03 |
| 44 | GO:0009396: folic acid-containing compound biosynthetic process | 2.12E-03 |
| 45 | GO:0010374: stomatal complex development | 2.12E-03 |
| 46 | GO:0080186: developmental vegetative growth | 2.12E-03 |
| 47 | GO:0010311: lateral root formation | 2.24E-03 |
| 48 | GO:0006261: DNA-dependent DNA replication | 2.81E-03 |
| 49 | GO:0048507: meristem development | 3.17E-03 |
| 50 | GO:0006189: 'de novo' IMP biosynthetic process | 3.17E-03 |
| 51 | GO:0010449: root meristem growth | 3.55E-03 |
| 52 | GO:0035999: tetrahydrofolate interconversion | 3.55E-03 |
| 53 | GO:1900865: chloroplast RNA modification | 3.55E-03 |
| 54 | GO:0006259: DNA metabolic process | 3.95E-03 |
| 55 | GO:0006457: protein folding | 4.47E-03 |
| 56 | GO:0010582: floral meristem determinacy | 4.79E-03 |
| 57 | GO:2000012: regulation of auxin polar transport | 5.22E-03 |
| 58 | GO:0006541: glutamine metabolic process | 5.68E-03 |
| 59 | GO:0010030: positive regulation of seed germination | 6.14E-03 |
| 60 | GO:0016569: covalent chromatin modification | 6.23E-03 |
| 61 | GO:0006406: mRNA export from nucleus | 7.11E-03 |
| 62 | GO:0010073: meristem maintenance | 7.62E-03 |
| 63 | GO:0051302: regulation of cell division | 7.62E-03 |
| 64 | GO:0000398: mRNA splicing, via spliceosome | 7.64E-03 |
| 65 | GO:0006334: nucleosome assembly | 8.14E-03 |
| 66 | GO:0061077: chaperone-mediated protein folding | 8.14E-03 |
| 67 | GO:0006730: one-carbon metabolic process | 8.67E-03 |
| 68 | GO:0009693: ethylene biosynthetic process | 9.21E-03 |
| 69 | GO:0071215: cellular response to abscisic acid stimulus | 9.21E-03 |
| 70 | GO:0009411: response to UV | 9.21E-03 |
| 71 | GO:0009790: embryo development | 9.68E-03 |
| 72 | GO:0006284: base-excision repair | 9.77E-03 |
| 73 | GO:0009561: megagametogenesis | 9.77E-03 |
| 74 | GO:0008033: tRNA processing | 1.09E-02 |
| 75 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-02 |
| 76 | GO:0010305: leaf vascular tissue pattern formation | 1.15E-02 |
| 77 | GO:0010197: polar nucleus fusion | 1.15E-02 |
| 78 | GO:0009960: endosperm development | 1.15E-02 |
| 79 | GO:0080156: mitochondrial mRNA modification | 1.34E-02 |
| 80 | GO:0046686: response to cadmium ion | 1.72E-02 |
| 81 | GO:0006974: cellular response to DNA damage stimulus | 1.88E-02 |
| 82 | GO:0016049: cell growth | 2.02E-02 |
| 83 | GO:0008219: cell death | 2.09E-02 |
| 84 | GO:0048527: lateral root development | 2.32E-02 |
| 85 | GO:0000724: double-strand break repair via homologous recombination | 2.40E-02 |
| 86 | GO:0009853: photorespiration | 2.48E-02 |
| 87 | GO:0045892: negative regulation of transcription, DNA-templated | 2.68E-02 |
| 88 | GO:0008283: cell proliferation | 2.97E-02 |
| 89 | GO:0032259: methylation | 3.12E-02 |
| 90 | GO:0000154: rRNA modification | 3.23E-02 |
| 91 | GO:0006260: DNA replication | 3.40E-02 |
| 92 | GO:0006417: regulation of translation | 3.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 2 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 3 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 4 | GO:0048256: flap endonuclease activity | 0.00E+00 |
| 5 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 6 | GO:0034062: 5'-3' RNA polymerase activity | 0.00E+00 |
| 7 | GO:0003723: RNA binding | 2.09E-18 |
| 8 | GO:0004004: ATP-dependent RNA helicase activity | 2.25E-07 |
| 9 | GO:0008026: ATP-dependent helicase activity | 3.03E-07 |
| 10 | GO:0003735: structural constituent of ribosome | 4.14E-07 |
| 11 | GO:0043021: ribonucleoprotein complex binding | 9.18E-07 |
| 12 | GO:0000166: nucleotide binding | 1.44E-05 |
| 13 | GO:0004407: histone deacetylase activity | 1.91E-05 |
| 14 | GO:0004527: exonuclease activity | 5.85E-05 |
| 15 | GO:0030515: snoRNA binding | 7.02E-05 |
| 16 | GO:0042134: rRNA primary transcript binding | 1.35E-04 |
| 17 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.35E-04 |
| 18 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.35E-04 |
| 19 | GO:0044183: protein binding involved in protein folding | 2.34E-04 |
| 20 | GO:0050897: cobalt ion binding | 2.48E-04 |
| 21 | GO:0000175: 3'-5'-exoribonuclease activity | 3.08E-04 |
| 22 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 3.11E-04 |
| 23 | GO:0003938: IMP dehydrogenase activity | 3.11E-04 |
| 24 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 3.11E-04 |
| 25 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 3.11E-04 |
| 26 | GO:0017108: 5'-flap endonuclease activity | 5.13E-04 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.74E-04 |
| 28 | GO:0043023: ribosomal large subunit binding | 7.34E-04 |
| 29 | GO:0008409: 5'-3' exonuclease activity | 9.73E-04 |
| 30 | GO:0019843: rRNA binding | 1.18E-03 |
| 31 | GO:0003689: DNA clamp loader activity | 1.23E-03 |
| 32 | GO:0005524: ATP binding | 1.24E-03 |
| 33 | GO:0016462: pyrophosphatase activity | 1.51E-03 |
| 34 | GO:0043022: ribosome binding | 2.46E-03 |
| 35 | GO:0016887: ATPase activity | 2.46E-03 |
| 36 | GO:0003746: translation elongation factor activity | 2.70E-03 |
| 37 | GO:0008173: RNA methyltransferase activity | 2.81E-03 |
| 38 | GO:0008168: methyltransferase activity | 2.91E-03 |
| 39 | GO:0003678: DNA helicase activity | 3.17E-03 |
| 40 | GO:0001055: RNA polymerase II activity | 3.55E-03 |
| 41 | GO:0001054: RNA polymerase I activity | 4.36E-03 |
| 42 | GO:0003729: mRNA binding | 4.45E-03 |
| 43 | GO:0000049: tRNA binding | 4.79E-03 |
| 44 | GO:0001056: RNA polymerase III activity | 4.79E-03 |
| 45 | GO:0003725: double-stranded RNA binding | 5.22E-03 |
| 46 | GO:0009982: pseudouridine synthase activity | 5.22E-03 |
| 47 | GO:0051082: unfolded protein binding | 6.62E-03 |
| 48 | GO:0004519: endonuclease activity | 7.32E-03 |
| 49 | GO:0010181: FMN binding | 1.21E-02 |
| 50 | GO:0004518: nuclease activity | 1.40E-02 |
| 51 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.02E-02 |
| 52 | GO:0003697: single-stranded DNA binding | 2.48E-02 |
| 53 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.56E-02 |
| 54 | GO:0003676: nucleic acid binding | 2.57E-02 |
| 55 | GO:0042393: histone binding | 2.72E-02 |
| 56 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.72E-02 |
| 57 | GO:0016787: hydrolase activity | 2.75E-02 |
| 58 | GO:0003924: GTPase activity | 3.26E-02 |
| 59 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.31E-02 |
| 60 | GO:0003690: double-stranded DNA binding | 3.76E-02 |
| 61 | GO:0005515: protein binding | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 6.78E-31 |
| 4 | GO:0030687: preribosome, large subunit precursor | 1.11E-11 |
| 5 | GO:0032040: small-subunit processome | 7.98E-08 |
| 6 | GO:0070545: PeBoW complex | 9.18E-07 |
| 7 | GO:0005634: nucleus | 1.39E-06 |
| 8 | GO:0005840: ribosome | 2.18E-06 |
| 9 | GO:0005618: cell wall | 5.63E-05 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 7.87E-05 |
| 11 | GO:0005834: heterotrimeric G-protein complex | 7.92E-05 |
| 12 | GO:0005829: cytosol | 2.85E-04 |
| 13 | GO:0022627: cytosolic small ribosomal subunit | 4.00E-04 |
| 14 | GO:0015935: small ribosomal subunit | 5.84E-04 |
| 15 | GO:0022626: cytosolic ribosome | 5.99E-04 |
| 16 | GO:0005747: mitochondrial respiratory chain complex I | 7.37E-04 |
| 17 | GO:0005663: DNA replication factor C complex | 9.73E-04 |
| 18 | GO:0005654: nucleoplasm | 1.14E-03 |
| 19 | GO:0000178: exosome (RNase complex) | 1.23E-03 |
| 20 | GO:0031428: box C/D snoRNP complex | 1.51E-03 |
| 21 | GO:0005759: mitochondrial matrix | 1.56E-03 |
| 22 | GO:0016363: nuclear matrix | 1.81E-03 |
| 23 | GO:0005774: vacuolar membrane | 1.96E-03 |
| 24 | GO:0034399: nuclear periphery | 2.46E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 3.17E-03 |
| 26 | GO:0005736: DNA-directed RNA polymerase I complex | 3.17E-03 |
| 27 | GO:0005666: DNA-directed RNA polymerase III complex | 3.55E-03 |
| 28 | GO:0015030: Cajal body | 3.55E-03 |
| 29 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.95E-03 |
| 30 | GO:0005739: mitochondrion | 4.16E-03 |
| 31 | GO:0022625: cytosolic large ribosomal subunit | 4.28E-03 |
| 32 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.79E-03 |
| 33 | GO:0019013: viral nucleocapsid | 5.22E-03 |
| 34 | GO:0005681: spliceosomal complex | 5.50E-03 |
| 35 | GO:0000419: DNA-directed RNA polymerase V complex | 6.62E-03 |
| 36 | GO:0042651: thylakoid membrane | 7.62E-03 |
| 37 | GO:0009506: plasmodesma | 1.41E-02 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 1.73E-02 |
| 39 | GO:0015934: large ribosomal subunit | 2.32E-02 |
| 40 | GO:0016607: nuclear speck | 4.23E-02 |