co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071038: nuclear polyadenylation-dependent tRNA catabolic process	0.00E+00
2	GO:0071034: CUT catabolic process	0.00E+00
3	GO:0000467: exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0071049: nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	0.00E+00
5	GO:0071731: response to nitric oxide	0.00E+00
6	GO:0039694: viral RNA genome replication	0.00E+00
7	GO:0090069: regulation of ribosome biogenesis	0.00E+00
8	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
9	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
10	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
11	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
12	GO:0070476: rRNA (guanine-N7)-methylation	0.00E+00
13	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
14	GO:0043928: exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	0.00E+00
15	GO:0071035: nuclear polyadenylation-dependent rRNA catabolic process	0.00E+00
16	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
17	GO:0006364: rRNA processing	6.02E-20
18	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.30E-12
19	GO:0042254: ribosome biogenesis	3.70E-07
20	GO:0009553: embryo sac development	6.73E-06
21	GO:0000460: maturation of 5.8S rRNA	1.63E-05
22	GO:0009451: RNA modification	2.90E-05
23	GO:0010501: RNA secondary structure unwinding	5.71E-05
24	GO:0000028: ribosomal small subunit assembly	9.72E-05
25	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.42E-04
26	GO:0030490: maturation of SSU-rRNA	1.42E-04
27	GO:0010930: negative regulation of auxin mediated signaling pathway	1.42E-04
28	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.42E-04
29	GO:1902182: shoot apical meristem development	1.42E-04
30	GO:2000232: regulation of rRNA processing	1.42E-04
31	GO:0043985: histone H4-R3 methylation	1.42E-04
32	GO:0000469: cleavage involved in rRNA processing	1.42E-04
33	GO:0080009: mRNA methylation	3.25E-04
34	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	3.25E-04
35	GO:0060149: negative regulation of posttranscriptional gene silencing	3.25E-04
36	GO:0034470: ncRNA processing	3.25E-04
37	GO:0034475: U4 snRNA 3'-end processing	3.25E-04
38	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	5.33E-04
39	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	5.33E-04
40	GO:0045604: regulation of epidermal cell differentiation	5.33E-04
41	GO:0006421: asparaginyl-tRNA aminoacylation	5.33E-04
42	GO:0042780: tRNA 3'-end processing	5.33E-04
43	GO:0007276: gamete generation	7.63E-04
44	GO:0009561: megagametogenesis	7.98E-04
45	GO:0051301: cell division	8.38E-04
46	GO:0009793: embryo development ending in seed dormancy	9.33E-04
47	GO:0006479: protein methylation	1.01E-03
48	GO:0046345: abscisic acid catabolic process	1.01E-03
49	GO:0042273: ribosomal large subunit biogenesis	1.01E-03
50	GO:0048825: cotyledon development	1.14E-03
51	GO:0000380: alternative mRNA splicing, via spliceosome	1.28E-03
52	GO:0006405: RNA export from nucleus	1.28E-03
53	GO:0009790: embryo development	1.54E-03
54	GO:0000470: maturation of LSU-rRNA	1.57E-03
55	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.57E-03
56	GO:0000741: karyogamy	1.57E-03
57	GO:0048444: floral organ morphogenesis	1.88E-03
58	GO:0010077: maintenance of inflorescence meristem identity	1.88E-03
59	GO:0045995: regulation of embryonic development	2.21E-03
60	GO:0006400: tRNA modification	2.21E-03
61	GO:0019827: stem cell population maintenance	2.56E-03
62	GO:0042255: ribosome assembly	2.56E-03
63	GO:0001522: pseudouridine synthesis	2.56E-03
64	GO:0009880: embryonic pattern specification	2.93E-03
65	GO:0001708: cell fate specification	3.31E-03
66	GO:2000024: regulation of leaf development	3.31E-03
67	GO:0000387: spliceosomal snRNP assembly	3.71E-03
68	GO:0006349: regulation of gene expression by genetic imprinting	3.71E-03
69	GO:0010162: seed dormancy process	4.12E-03
70	GO:0006913: nucleocytoplasmic transport	4.55E-03
71	GO:0010582: floral meristem determinacy	4.99E-03
72	GO:2000012: regulation of auxin polar transport	5.45E-03
73	GO:0006417: regulation of translation	5.48E-03
74	GO:0010030: positive regulation of seed germination	6.41E-03
75	GO:0016569: covalent chromatin modification	6.62E-03
76	GO:0032259: methylation	6.73E-03
77	GO:0009944: polarity specification of adaxial/abaxial axis	7.42E-03
78	GO:0051302: regulation of cell division	7.95E-03
79	GO:0007005: mitochondrion organization	9.05E-03
80	GO:0009693: ethylene biosynthetic process	9.62E-03
81	GO:0009294: DNA mediated transformation	9.62E-03
82	GO:0070417: cellular response to cold	1.08E-02
83	GO:0051028: mRNA transport	1.08E-02
84	GO:0006606: protein import into nucleus	1.14E-02
85	GO:0010197: polar nucleus fusion	1.20E-02
86	GO:0006342: chromatin silencing	1.20E-02
87	GO:0009960: endosperm development	1.20E-02
88	GO:0010305: leaf vascular tissue pattern formation	1.20E-02
89	GO:0006412: translation	1.56E-02
90	GO:0016049: cell growth	2.11E-02
91	GO:0008219: cell death	2.19E-02
92	GO:0048366: leaf development	2.23E-02
93	GO:0048527: lateral root development	2.42E-02
94	GO:0045892: negative regulation of transcription, DNA-templated	2.85E-02
95	GO:0009926: auxin polar transport	3.10E-02
96	GO:0006260: DNA replication	3.55E-02
97	GO:0009909: regulation of flower development	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
4	GO:0016435: rRNA (guanine) methyltransferase activity	0.00E+00
5	GO:0003723: RNA binding	2.40E-20
6	GO:0000166: nucleotide binding	4.72E-14
7	GO:0008026: ATP-dependent helicase activity	1.24E-08
8	GO:0043021: ribonucleoprotein complex binding	9.95E-07
9	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.94E-06
10	GO:0070181: small ribosomal subunit rRNA binding	3.72E-06
11	GO:0001054: RNA polymerase I activity	6.06E-06
12	GO:0004004: ATP-dependent RNA helicase activity	9.58E-06
13	GO:0004519: endonuclease activity	4.02E-05
14	GO:0030515: snoRNA binding	7.52E-05
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.42E-04
16	GO:0003676: nucleic acid binding	3.20E-04
17	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	3.25E-04
18	GO:0004407: histone deacetylase activity	5.13E-04
19	GO:0008168: methyltransferase activity	5.28E-04
20	GO:0042781: 3'-tRNA processing endoribonuclease activity	5.33E-04
21	GO:0004816: asparagine-tRNA ligase activity	5.33E-04
22	GO:0048027: mRNA 5'-UTR binding	7.63E-04
23	GO:0004527: exonuclease activity	9.96E-04
24	GO:0003729: mRNA binding	1.34E-03
25	GO:0043022: ribosome binding	2.56E-03
26	GO:0017056: structural constituent of nuclear pore	2.56E-03
27	GO:0005487: nucleocytoplasmic transporter activity	3.71E-03
28	GO:0005543: phospholipid binding	4.55E-03
29	GO:0004521: endoribonuclease activity	4.99E-03
30	GO:0001056: RNA polymerase III activity	4.99E-03
31	GO:0003887: DNA-directed DNA polymerase activity	6.91E-03
32	GO:0043130: ubiquitin binding	7.42E-03
33	GO:0003713: transcription coactivator activity	1.20E-02
34	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.11E-02
35	GO:0003746: translation elongation factor activity	2.59E-02
36	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.67E-02
37	GO:0003735: structural constituent of ribosome	2.70E-02
38	GO:0042393: histone binding	2.84E-02
39	GO:0016787: hydrolase activity	3.01E-02
40	GO:0004650: polygalacturonase activity	4.62E-02
41	GO:0005524: ATP binding	4.69E-02
42	GO:0051082: unfolded protein binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0030688: preribosome, small subunit precursor	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0019034: viral replication complex	0.00E+00
6	GO:0070545: PeBoW complex	0.00E+00
7	GO:0030692: Noc4p-Nop14p complex	0.00E+00
8	GO:0005730: nucleolus	4.06E-35
9	GO:0005634: nucleus	5.03E-11
10	GO:0032040: small-subunit processome	7.35E-10
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	9.82E-10
12	GO:0030687: preribosome, large subunit precursor	7.93E-07
13	GO:0005736: DNA-directed RNA polymerase I complex	2.55E-06
14	GO:0005654: nucleoplasm	1.19E-05
15	GO:0005834: heterotrimeric G-protein complex	8.85E-05
16	GO:0034399: nuclear periphery	9.72E-05
17	GO:0005763: mitochondrial small ribosomal subunit	1.50E-04
18	GO:0044613: nuclear pore central transport channel	3.25E-04
19	GO:0000177: cytoplasmic exosome (RNase complex)	3.25E-04
20	GO:0000176: nuclear exosome (RNase complex)	5.33E-04
21	GO:0005666: DNA-directed RNA polymerase III complex	3.71E-03
22	GO:0043234: protein complex	6.91E-03
23	GO:0042651: thylakoid membrane	7.95E-03
24	GO:0015935: small ribosomal subunit	8.49E-03
25	GO:0005759: mitochondrial matrix	1.11E-02
26	GO:0019898: extrinsic component of membrane	1.33E-02
27	GO:0022627: cytosolic small ribosomal subunit	1.62E-02
28	GO:0005829: cytosol	1.70E-02
29	GO:0030529: intracellular ribonucleoprotein complex	1.81E-02
30	GO:0015934: large ribosomal subunit	2.42E-02
31	GO:0005622: intracellular	3.04E-02
32	GO:0005635: nuclear envelope	4.02E-02
33	GO:0005747: mitochondrial respiratory chain complex I	4.42E-02
34	GO:0016607: nuclear speck	4.42E-02