Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G18876

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071000: response to magnetism0.00E+00
2GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
3GO:0032928: regulation of superoxide anion generation0.00E+00
4GO:1904215: regulation of protein import into chloroplast stroma0.00E+00
5GO:0032780: negative regulation of ATPase activity0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0046294: formaldehyde catabolic process0.00E+00
8GO:0010117: photoprotection2.41E-06
9GO:0019343: cysteine biosynthetic process via cystathionine3.37E-05
10GO:0072387: flavin adenine dinucleotide metabolic process3.37E-05
11GO:0071266: 'de novo' L-methionine biosynthetic process3.37E-05
12GO:0019346: transsulfuration3.37E-05
13GO:2000377: regulation of reactive oxygen species metabolic process7.06E-05
14GO:0010617: circadian regulation of calcium ion oscillation8.48E-05
15GO:0099402: plant organ development8.48E-05
16GO:0019441: tryptophan catabolic process to kynurenine8.48E-05
17GO:0006996: organelle organization8.48E-05
18GO:0016122: xanthophyll metabolic process8.48E-05
19GO:0010343: singlet oxygen-mediated programmed cell death8.48E-05
20GO:1901529: positive regulation of anion channel activity8.48E-05
21GO:0010351: lithium ion transport1.47E-04
22GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.47E-04
23GO:1902448: positive regulation of shade avoidance1.47E-04
24GO:0006013: mannose metabolic process1.47E-04
25GO:1901672: positive regulation of systemic acquired resistance1.47E-04
26GO:1901332: negative regulation of lateral root development2.18E-04
27GO:0009399: nitrogen fixation2.18E-04
28GO:1902347: response to strigolactone2.95E-04
29GO:0034613: cellular protein localization2.95E-04
30GO:0006542: glutamine biosynthetic process2.95E-04
31GO:0051567: histone H3-K9 methylation2.95E-04
32GO:0006749: glutathione metabolic process2.95E-04
33GO:0098719: sodium ion import across plasma membrane3.77E-04
34GO:0046283: anthocyanin-containing compound metabolic process3.77E-04
35GO:0007094: mitotic spindle assembly checkpoint3.77E-04
36GO:0018344: protein geranylgeranylation3.77E-04
37GO:0060918: auxin transport4.63E-04
38GO:0016458: gene silencing4.63E-04
39GO:0010304: PSII associated light-harvesting complex II catabolic process4.63E-04
40GO:0016070: RNA metabolic process4.63E-04
41GO:0031053: primary miRNA processing4.63E-04
42GO:1901371: regulation of leaf morphogenesis4.63E-04
43GO:0010310: regulation of hydrogen peroxide metabolic process5.53E-04
44GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.53E-04
45GO:0051510: regulation of unidimensional cell growth6.47E-04
46GO:0045292: mRNA cis splicing, via spliceosome7.44E-04
47GO:0005978: glycogen biosynthetic process7.44E-04
48GO:0009880: embryonic pattern specification8.45E-04
49GO:0051453: regulation of intracellular pH1.06E-03
50GO:1900426: positive regulation of defense response to bacterium1.06E-03
51GO:0009638: phototropism1.06E-03
52GO:0009688: abscisic acid biosynthetic process1.17E-03
53GO:0045037: protein import into chloroplast stroma1.40E-03
54GO:0010075: regulation of meristem growth1.52E-03
55GO:0009785: blue light signaling pathway1.52E-03
56GO:0000162: tryptophan biosynthetic process1.91E-03
57GO:0006487: protein N-linked glycosylation2.05E-03
58GO:0006306: DNA methylation2.33E-03
59GO:0010051: xylem and phloem pattern formation3.09E-03
60GO:0010118: stomatal movement3.09E-03
61GO:0006814: sodium ion transport3.42E-03
62GO:0042752: regulation of circadian rhythm3.42E-03
63GO:0009646: response to absence of light3.42E-03
64GO:0019252: starch biosynthetic process3.59E-03
65GO:0071805: potassium ion transmembrane transport4.46E-03
66GO:0006974: cellular response to DNA damage stimulus5.21E-03
67GO:0042128: nitrate assimilation5.21E-03
68GO:0048364: root development5.41E-03
69GO:0018298: protein-chromophore linkage5.79E-03
70GO:0009407: toxin catabolic process6.20E-03
71GO:0010218: response to far red light6.20E-03
72GO:0009637: response to blue light6.82E-03
73GO:0010114: response to red light8.14E-03
74GO:0009640: photomorphogenesis8.14E-03
75GO:0009644: response to high light intensity8.60E-03
76GO:0009636: response to toxic substance8.82E-03
77GO:0010224: response to UV-B1.03E-02
78GO:0000398: mRNA splicing, via spliceosome1.42E-02
79GO:0009058: biosynthetic process1.56E-02
80GO:0007623: circadian rhythm1.89E-02
81GO:0010150: leaf senescence1.89E-02
82GO:0010468: regulation of gene expression2.15E-02
83GO:0009658: chloroplast organization2.58E-02
84GO:0046686: response to cadmium ion2.91E-02
85GO:0080167: response to karrikin3.01E-02
86GO:0046777: protein autophosphorylation3.16E-02
87GO:0045892: negative regulation of transcription, DNA-templated3.46E-02
88GO:0032259: methylation3.85E-02
89GO:0016042: lipid catabolic process3.89E-02
90GO:0006629: lipid metabolic process3.97E-02
91GO:0009408: response to heat3.97E-02
92GO:0006281: DNA repair3.97E-02
RankGO TermAdjusted P value
1GO:0018738: S-formylglutathione hydrolase activity0.00E+00
2GO:0008170: N-methyltransferase activity0.00E+00
3GO:0042030: ATPase inhibitor activity0.00E+00
4GO:0009008: DNA-methyltransferase activity0.00E+00
5GO:0071949: FAD binding1.67E-05
6GO:0019707: protein-cysteine S-acyltransferase activity3.37E-05
7GO:0004123: cystathionine gamma-lyase activity3.37E-05
8GO:0004048: anthranilate phosphoribosyltransferase activity3.37E-05
9GO:0004121: cystathionine beta-lyase activity3.37E-05
10GO:0004061: arylformamidase activity8.48E-05
11GO:0003962: cystathionine gamma-synthase activity1.47E-04
12GO:0004848: ureidoglycolate hydrolase activity1.47E-04
13GO:0004663: Rab geranylgeranyltransferase activity1.47E-04
14GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.18E-04
15GO:0000339: RNA cap binding2.18E-04
16GO:0009882: blue light photoreceptor activity2.18E-04
17GO:0008878: glucose-1-phosphate adenylyltransferase activity2.95E-04
18GO:0004356: glutamate-ammonia ligase activity3.77E-04
19GO:0015081: sodium ion transmembrane transporter activity4.63E-04
20GO:0004559: alpha-mannosidase activity5.53E-04
21GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.53E-04
22GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.49E-04
23GO:0001055: RNA polymerase II activity1.06E-03
24GO:0001054: RNA polymerase I activity1.28E-03
25GO:0015386: potassium:proton antiporter activity1.28E-03
26GO:0001056: RNA polymerase III activity1.40E-03
27GO:0005528: FK506 binding2.05E-03
28GO:0004176: ATP-dependent peptidase activity2.33E-03
29GO:0015385: sodium:proton antiporter activity4.10E-03
30GO:0008237: metallopeptidase activity4.46E-03
31GO:0004806: triglyceride lipase activity5.40E-03
32GO:0004693: cyclin-dependent protein serine/threonine kinase activity6.20E-03
33GO:0004222: metalloendopeptidase activity6.20E-03
34GO:0004364: glutathione transferase activity7.91E-03
35GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.06E-03
36GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.00E-02
37GO:0016874: ligase activity1.23E-02
38GO:0030170: pyridoxal phosphate binding1.62E-02
39GO:0003676: nucleic acid binding1.93E-02
40GO:0003824: catalytic activity2.05E-02
41GO:0042802: identical protein binding2.24E-02
42GO:0008168: methyltransferase activity2.51E-02
43GO:0016788: hydrolase activity, acting on ester bonds2.62E-02
44GO:0004672: protein kinase activity2.75E-02
45GO:0052689: carboxylic ester hydrolase activity3.23E-02
46GO:0042803: protein homodimerization activity3.54E-02
47GO:0016787: hydrolase activity4.00E-02
48GO:0003677: DNA binding4.43E-02
RankGO TermAdjusted P value
1GO:0005845: mRNA cap binding complex3.37E-05
2GO:0005846: nuclear cap binding complex8.48E-05
3GO:0016605: PML body1.47E-04
4GO:0005968: Rab-protein geranylgeranyltransferase complex2.18E-04
5GO:0009517: PSII associated light-harvesting complex II2.95E-04
6GO:0016604: nuclear body1.06E-03
7GO:0000419: DNA-directed RNA polymerase V complex1.91E-03
8GO:0032580: Golgi cisterna membrane4.28E-03
9GO:0009941: chloroplast envelope5.51E-03
10GO:0009707: chloroplast outer membrane5.79E-03
11GO:0010008: endosome membrane1.15E-02
12GO:0005654: nucleoplasm1.48E-02
13GO:0009543: chloroplast thylakoid lumen1.51E-02
14GO:0005768: endosome1.68E-02
15GO:0005615: extracellular space2.05E-02
16GO:0005773: vacuole2.66E-02
17GO:0031969: chloroplast membrane3.01E-02
18GO:0009507: chloroplast3.37E-02
19GO:0009570: chloroplast stroma3.46E-02
20GO:0005743: mitochondrial inner membrane3.77E-02
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Gene type



Gene DE type